Wall clock time and date at job start Tue Mar 31 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58323 * 2 1 4 4 C 1.53239 * 109.58002 * 120.27274 * 2 1 3 5 5 N 1.46376 * 109.48887 * 62.13700 * 4 2 1 6 6 C 1.34767 * 119.64995 * 245.08780 * 5 4 2 7 7 O 1.21369 * 120.00294 * 5.09050 * 6 5 4 8 8 C 1.49314 * 120.00229 * 185.09754 * 6 5 4 9 9 O 1.21406 * 119.99460 * 353.65999 * 8 6 5 10 10 N 1.34770 * 120.00102 * 173.93703 * 8 6 5 11 11 C 1.40292 * 120.00165 * 179.72268 * 10 8 6 12 12 C 1.40723 * 126.09545 * 359.68943 * 11 10 8 13 13 N 1.30882 * 108.37505 * 179.81243 * 12 11 10 14 14 N 1.40062 * 108.43522 * 0.44305 * 13 12 11 15 15 C 1.37292 * 126.05779 * 179.71377 * 14 13 12 16 16 H 1.08007 * 120.00286 * 180.02562 * 15 14 13 17 17 C 1.39007 * 120.00216 * 359.97438 * 15 14 13 18 18 N 1.31290 * 119.99474 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00255 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47221 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47127 * 120.00228 * 19 17 15 22 22 H 1.48501 * 109.46951 * 239.99890 * 19 17 15 23 23 C 1.35791 * 126.10313 * 179.97438 * 11 10 8 24 24 C 1.46378 * 120.70341 * 65.36702 * 5 4 2 25 25 C 1.53757 * 109.20391 * 294.63370 * 24 5 4 26 26 H 1.09000 * 109.81351 * 297.92872 * 25 24 5 27 27 C 1.53001 * 109.51461 * 177.55602 * 25 24 5 28 28 S 1.81736 * 109.58518 * 239.58461 * 2 1 3 29 29 H 1.08995 * 109.47867 * 299.72824 * 1 2 3 30 30 H 1.09007 * 109.46544 * 59.72979 * 1 2 3 31 31 H 1.08997 * 109.47099 * 179.72174 * 1 2 3 32 32 H 1.09003 * 109.46942 * 302.13397 * 4 2 1 33 33 H 1.08998 * 109.46963 * 182.14827 * 4 2 1 34 34 H 0.96997 * 120.00482 * 359.72083 * 10 8 6 35 35 H 1.07993 * 125.81609 * 359.97438 * 12 11 10 36 36 H 0.96998 * 119.99659 * 179.97438 * 18 17 15 37 37 H 1.07993 * 126.25091 * 0.02562 * 23 11 10 38 38 H 1.09003 * 109.47276 * 54.63613 * 24 5 4 39 39 H 1.08996 * 109.47159 * 174.63454 * 24 5 4 40 40 H 1.08998 * 109.47240 * 300.79104 * 27 25 24 41 41 H 1.09003 * 109.46724 * 60.77990 * 27 25 24 42 42 H 1.08997 * 109.47749 * 180.78576 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2469 5 7 1.5996 -2.1223 1.2159 6 6 0.7409 -2.5696 2.1534 7 8 0.2680 -1.7971 2.9613 8 6 0.3714 -4.0156 2.1984 9 8 0.7517 -4.7667 1.3237 10 7 -0.3890 -4.4857 3.2069 11 6 -0.7410 -5.8432 3.2460 12 6 -0.3782 -6.8213 2.3016 13 7 -0.8877 -7.9668 2.6775 14 7 -1.6015 -7.7655 3.8657 15 6 -2.2848 -8.7254 4.5704 16 1 -2.8046 -8.4605 5.4793 17 6 -2.3085 -10.0381 4.1136 18 7 -1.6770 -10.3600 3.0084 19 14 -3.2376 -11.3442 5.0728 20 1 -3.8588 -10.7289 6.2730 21 1 -4.2972 -11.9300 4.2129 22 1 -2.2959 -12.4122 5.4946 23 6 -1.4972 -6.4465 4.1990 24 6 2.0830 -3.0378 0.1811 25 6 1.5688 -2.5684 -1.1898 26 1 0.4792 -2.5959 -1.2048 27 6 2.1200 -3.4852 -2.2837 28 16 2.1392 -0.8668 -1.4766 29 1 -0.3635 0.5096 0.8923 30 1 -0.3633 0.5181 -0.8876 31 1 -0.3633 -1.0276 -0.0050 32 1 1.6503 -0.2411 2.1394 33 1 3.1328 -0.6936 1.2647 34 1 -0.6928 -3.8857 3.9058 35 1 0.2211 -6.6557 1.4186 36 1 -1.6933 -11.2760 2.6898 37 1 -1.9363 -5.9694 5.0626 38 1 3.1731 -3.0427 0.1807 39 1 1.7153 -4.0434 0.3850 40 1 3.2095 -3.4603 -2.2638 41 1 1.7768 -4.5051 -2.1099 42 1 1.7663 -3.1437 -3.2565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746422358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:46 Heat of formation + Delta-G solvation = 42.229385 kcal Electronic energy + Delta-G solvation = -27218.484280 eV Core-core repulsion = 23328.044137 eV Total energy + Delta-G solvation = -3890.440144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01983 -39.73151 -38.29021 -37.14615 -34.64432 -34.06365 -33.30698 -32.37090 -30.42064 -28.30707 -27.57629 -26.60545 -25.29027 -23.83457 -22.23494 -21.60424 -21.10159 -19.92542 -19.65399 -17.89880 -17.58378 -17.04200 -16.42577 -15.78858 -15.63314 -15.30426 -15.21554 -15.15552 -14.95780 -14.35369 -14.12856 -13.86046 -13.65744 -13.26416 -13.15291 -13.07244 -12.98450 -12.45180 -12.13954 -11.92886 -11.91438 -11.80238 -11.52950 -11.45605 -11.36589 -11.15040 -10.92619 -10.77769 -10.57588 -10.47009 -9.94540 -9.33410 -9.08168 -8.99326 -8.69744 -8.22659 -7.81746 -6.90469 -6.68311 -4.36179 1.44603 1.51927 2.30714 2.38240 2.86192 2.99537 3.05492 3.16325 3.54376 3.58920 3.77390 4.25195 4.32689 4.41776 4.53474 4.70229 4.78024 4.85302 4.90720 4.91422 5.08513 5.25473 5.36520 5.45317 5.51961 5.56535 5.61466 5.76041 5.93685 5.94838 6.00738 6.10091 6.19490 6.24262 6.62202 6.79776 6.96174 6.97462 7.08957 7.56810 7.73150 7.94393 8.07865 8.34999 8.58575 9.21603 9.49920 10.27310 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.002531 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.937387 B =11058.200203 C =11832.022502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.118 0.882 4 C 0.109 3.891 5 N -0.584 5.584 6 C 0.516 3.484 7 O -0.524 6.524 8 C 0.486 3.514 9 O -0.509 6.509 10 N -0.572 5.572 11 C -0.076 4.076 12 C -0.023 4.023 13 N -0.260 5.260 14 N -0.136 5.136 15 C -0.321 4.321 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.765 5.765 19 Si 0.937 3.063 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.076 4.076 24 C 0.034 3.966 25 C -0.056 4.056 26 H 0.090 0.910 27 C -0.130 4.130 28 S -0.272 6.272 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.411 0.589 35 H 0.179 0.821 36 H 0.276 0.724 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.189 0.811 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 15.347 -4.598 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 H 0.136 0.864 4 C -0.016 4.016 5 N -0.317 5.317 6 C 0.299 3.701 7 O -0.400 6.400 8 C 0.268 3.732 9 O -0.389 6.389 10 N -0.212 5.212 11 C -0.182 4.182 12 C -0.199 4.199 13 N -0.091 5.091 14 N 0.098 4.902 15 C -0.453 4.453 16 H 0.137 0.863 17 C -0.172 4.172 18 N -0.391 5.391 19 Si 0.760 3.240 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.227 4.227 24 C -0.088 4.088 25 C -0.186 4.186 26 H 0.108 0.892 27 C -0.189 4.189 28 S -0.044 6.044 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.094 0.906 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.226 14.221 -6.059 16.665 hybrid contribution -1.057 0.521 1.842 2.187 sum 5.169 14.742 -4.217 16.182 Atomic orbital electron populations 1.21978 0.92639 1.02824 1.02685 1.23550 0.99623 1.01736 0.94732 0.86415 1.21796 1.00003 0.81421 0.98358 1.47717 1.44460 1.11022 1.28492 1.20200 0.79416 0.89119 0.81386 1.90727 1.52150 1.57362 1.39789 1.19638 0.81974 0.87941 0.83654 1.89997 1.54229 1.57470 1.37241 1.42146 1.46296 1.08752 1.24033 1.17252 1.14818 0.82901 1.03202 1.24147 1.04968 0.89646 1.01101 1.78285 1.13239 1.19355 0.98187 1.44594 1.27670 1.03929 1.14028 1.20002 1.30276 0.87529 1.07507 0.86311 1.25681 0.96625 0.98689 0.96157 1.70211 1.32012 1.19647 1.17257 0.85728 0.79074 0.79727 0.79450 1.18590 1.19810 1.19801 1.21311 1.11373 0.86731 1.03329 1.24061 1.00520 1.00235 0.84003 1.23667 1.03197 0.92647 0.99040 0.89205 1.21543 1.01664 0.99053 0.96645 1.86812 1.75936 1.09498 1.32185 0.91424 0.91510 0.92488 0.87729 0.89697 0.75376 0.80471 0.91311 0.83303 0.90617 0.79650 0.91592 0.90068 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.99 37.16 0.33 -1.11 16 2 C -0.07 -0.64 3.46 -26.61 -0.09 -0.73 16 3 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.11 1.11 5.64 -3.99 -0.02 1.08 16 5 N -0.58 -7.20 2.13 -173.83 -0.37 -7.57 16 6 C 0.52 7.52 7.62 -11.65 -0.09 7.43 16 7 O -0.52 -8.19 15.81 5.48 0.09 -8.10 16 8 C 0.49 8.10 7.77 -11.65 -0.09 8.01 16 9 O -0.51 -9.03 10.09 5.45 0.05 -8.98 16 10 N -0.57 -10.04 5.45 -10.45 -0.06 -10.10 16 11 C -0.08 -1.65 6.90 -83.92 -0.58 -2.23 16 12 C -0.02 -0.55 10.85 -17.02 -0.18 -0.74 16 13 N -0.26 -7.13 10.39 30.81 0.32 -6.81 16 14 N -0.14 -3.55 3.73 -11.40 -0.04 -3.60 16 15 C -0.32 -8.11 10.25 -14.82 -0.15 -8.26 16 16 H 0.12 2.68 7.83 -52.48 -0.41 2.27 16 17 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 18 N -0.77 -20.43 11.81 55.50 0.66 -19.77 16 19 Si 0.94 18.15 29.55 -169.99 -5.02 13.12 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 C -0.08 -1.70 11.50 -16.38 -0.19 -1.89 16 24 C 0.03 0.41 5.41 -3.71 -0.02 0.39 16 25 C -0.06 -0.62 2.93 -26.34 -0.08 -0.70 16 26 H 0.09 1.10 7.33 -51.93 -0.38 0.72 16 27 C -0.13 -1.26 9.22 37.16 0.34 -0.92 16 28 S -0.27 -2.95 21.09 -107.50 -2.27 -5.22 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 6.45 -51.93 -0.33 0.35 16 32 H 0.10 1.09 6.91 -51.93 -0.36 0.73 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.41 6.24 8.31 -40.82 -0.34 5.90 16 35 H 0.18 4.08 5.92 -52.49 -0.31 3.77 16 36 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.19 2.61 3.49 -58.01 -0.20 2.41 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -29.63 355.12 -7.48 -37.11 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.28 Total: 13.18 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.91 Total: 1.39 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.51 Total: -47.85 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.14 Total: -17.08 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.12 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.27 Total: -5.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.63 -7.48 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.339 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds