Wall clock time and date at job start Tue Mar 31 2020 20:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 108.73542 * 2 1 4 4 C 1.45826 * 108.84577 * 118.42902 * 2 1 3 5 5 C 1.53475 * 113.24870 * 185.87062 * 4 2 1 6 6 N 1.44683 * 109.73149 * 278.98474 * 5 4 2 7 7 C 1.34773 * 119.72324 * 278.68478 * 6 5 4 8 8 O 1.21367 * 119.99639 * 185.22184 * 7 6 5 9 9 C 1.49307 * 120.00481 * 4.94751 * 7 6 5 10 10 O 1.21413 * 119.99427 * 355.36641 * 9 7 6 11 11 N 1.34776 * 120.00291 * 175.36222 * 9 7 6 12 12 C 1.40299 * 119.99857 * 180.02562 * 11 9 7 13 13 C 1.40722 * 126.09979 * 359.69112 * 12 11 9 14 14 N 1.30882 * 108.37542 * 179.81558 * 13 12 11 15 15 N 1.40058 * 108.43128 * 0.44110 * 14 13 12 16 16 C 1.37301 * 126.05516 * 179.69419 * 15 14 13 17 17 H 1.07993 * 120.00112 * 180.02562 * 16 15 14 18 18 C 1.39007 * 119.99697 * 0.02870 * 16 15 14 19 19 N 1.31287 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47186 * 120.00118 * 20 18 16 23 23 H 1.48501 * 109.46974 * 239.99971 * 20 18 16 24 24 C 1.35782 * 126.09681 * 180.02562 * 12 11 9 25 25 C 1.46396 * 120.54679 * 98.40975 * 6 5 4 26 26 C 1.53820 * 114.94913 * 317.73354 * 25 6 5 27 27 S 1.79942 * 111.14256 * 316.95402 * 26 25 6 28 28 H 1.09000 * 109.47268 * 178.44149 * 1 2 3 29 29 H 1.08998 * 109.47330 * 298.44235 * 1 2 3 30 30 H 1.09007 * 109.46796 * 58.44307 * 1 2 3 31 31 H 1.08999 * 108.71985 * 306.93127 * 4 2 1 32 32 H 1.09008 * 108.71813 * 64.95944 * 4 2 1 33 33 H 1.09000 * 109.19521 * 158.99110 * 5 4 2 34 34 H 1.08997 * 109.46911 * 39.14545 * 5 4 2 35 35 H 0.96996 * 119.99654 * 0.02562 * 11 9 7 36 36 H 1.07997 * 125.81412 * 0.02562 * 13 12 11 37 37 H 0.96994 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.08001 * 126.25501 * 359.97438 * 24 12 11 39 39 H 1.08999 * 108.38512 * 79.15559 * 25 6 5 40 40 H 1.08998 * 108.38430 * 196.31638 * 25 6 5 41 41 H 1.08999 * 109.14535 * 77.38605 * 26 25 6 42 42 H 1.09010 * 109.14387 * 196.52878 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8801 1.0322 0.0000 4 6 2.0010 -0.6570 1.2137 5 6 3.5242 -0.5874 1.3880 6 7 4.1552 -1.6124 0.5851 7 6 4.2198 -2.8771 1.0464 8 8 4.8300 -3.7202 0.4220 9 6 3.5461 -3.2396 2.3286 10 8 3.0120 -2.3790 2.9980 11 7 3.5309 -4.5221 2.7427 12 6 2.8974 -4.8627 3.9473 13 6 2.2467 -3.9732 4.8223 14 7 1.7771 -4.6587 5.8335 15 7 2.1160 -6.0053 5.6512 16 6 1.8074 -7.0386 6.5011 17 1 2.1194 -8.0448 6.2634 18 6 1.0932 -6.7894 7.6673 19 7 0.7135 -5.5663 7.9559 20 14 0.6739 -8.1950 8.8240 21 1 1.2124 -9.4653 8.2750 22 1 1.2775 -7.9368 10.1561 23 1 -0.8011 -8.3002 8.9609 24 6 2.8082 -6.1085 4.4799 25 6 4.7185 -1.2884 -0.7266 26 6 3.8548 -0.3539 -1.5908 27 16 2.1187 -0.8213 -1.5163 28 1 -0.3634 -1.0273 -0.0279 29 1 -0.3634 0.4894 0.9036 30 1 -0.3633 0.5379 -0.8758 31 1 1.5270 -0.1843 2.0739 32 1 1.7005 -1.7044 1.1836 33 1 3.7723 -0.7441 2.4378 34 1 3.8816 0.3927 1.0724 35 1 3.9579 -5.2095 2.2080 36 1 2.1483 -2.9070 4.6816 37 1 0.2155 -5.3924 8.7699 38 1 3.2110 -7.0156 4.0539 39 1 5.6902 -0.8177 -0.5768 40 1 4.8724 -2.2183 -1.2740 41 1 3.9653 0.6692 -1.2314 42 1 4.1952 -0.4072 -2.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756276753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:09 Heat of formation + Delta-G solvation = 31.500288 kcal Electronic energy + Delta-G solvation = -27301.521279 eV Core-core repulsion = 23410.615887 eV Total energy + Delta-G solvation = -3890.905392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86508 -39.62755 -38.01181 -37.34695 -34.99204 -34.28932 -33.18950 -31.57789 -30.33201 -29.08931 -28.06818 -25.73645 -24.53388 -24.35300 -22.56840 -21.66812 -20.92787 -19.58109 -19.32798 -17.81980 -17.37870 -16.89027 -16.73033 -15.89594 -15.69766 -15.49853 -15.19861 -14.96572 -14.57475 -14.36061 -13.97877 -13.83863 -13.72091 -13.37293 -13.25740 -13.01260 -12.89863 -12.42659 -12.01660 -11.75927 -11.73034 -11.72490 -11.44446 -11.32730 -11.22454 -11.08008 -11.05443 -10.81212 -10.53849 -10.25973 -9.87870 -9.24903 -8.97256 -8.88116 -8.81371 -8.14355 -7.86179 -6.78873 -6.62067 -4.29050 1.45040 1.63442 2.29284 2.53863 2.91307 3.03149 3.08834 3.30078 3.66876 3.69445 3.85207 4.32954 4.35735 4.45301 4.55750 4.61908 4.69965 4.95144 4.96815 4.96943 5.11602 5.20035 5.23048 5.42254 5.47766 5.53105 5.62313 5.71838 5.93887 5.96757 6.17318 6.21789 6.34532 6.40098 6.74462 6.87543 6.92272 7.09437 7.15229 7.69646 7.81843 8.08778 8.17059 8.47556 8.68253 9.29741 9.58497 10.33767 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002662 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.809409 B =10515.923926 C =11227.653943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.576 5.576 7 C 0.518 3.482 8 O -0.526 6.526 9 C 0.485 3.515 10 O -0.515 6.515 11 N -0.582 5.582 12 C -0.068 4.068 13 C -0.026 4.026 14 N -0.261 5.261 15 N -0.139 5.139 16 C -0.321 4.321 17 H 0.118 0.882 18 C 0.046 3.954 19 N -0.767 5.767 20 Si 0.936 3.064 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.077 4.077 25 C 0.110 3.890 26 C -0.103 4.103 27 S -0.248 6.248 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.178 0.822 37 H 0.275 0.725 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 10.748 -14.846 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 H 0.100 0.900 4 C -0.170 4.170 5 C -0.022 4.022 6 N -0.309 5.309 7 C 0.302 3.698 8 O -0.402 6.402 9 C 0.267 3.733 10 O -0.393 6.393 11 N -0.225 5.225 12 C -0.174 4.174 13 C -0.201 4.201 14 N -0.092 5.092 15 N 0.095 4.905 16 C -0.454 4.454 17 H 0.136 0.864 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.759 3.241 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.229 4.229 25 C -0.015 4.015 26 C -0.252 4.252 27 S -0.020 6.020 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.195 0.805 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.870 10.473 -14.152 17.838 hybrid contribution 1.222 -0.188 0.113 1.242 sum 4.092 10.285 -14.039 17.878 Atomic orbital electron populations 1.21689 0.91689 1.03293 1.02668 1.22005 0.99954 1.00720 0.94665 0.90015 1.20971 0.96238 1.03292 0.96488 1.21832 0.92156 0.89850 0.98394 1.47144 1.57486 1.08481 1.17819 1.20286 0.80862 0.82247 0.86415 1.90715 1.41796 1.48612 1.59103 1.19536 0.83581 0.83644 0.86583 1.90590 1.45242 1.47363 1.56151 1.42161 1.51509 1.07820 1.20965 1.17243 1.14416 0.93900 0.91837 1.24131 1.02482 1.00146 0.93387 1.78258 1.23686 0.86252 1.20958 1.44563 1.28751 1.05957 1.11266 1.19971 1.36684 0.87260 1.01447 0.86415 1.25661 0.95659 0.97843 0.97945 1.70214 1.27379 1.19077 1.22718 0.85745 0.78781 0.80025 0.79513 1.18622 1.19870 1.19860 1.21314 1.10991 0.96962 0.93613 1.21602 0.95146 1.01036 0.83713 1.23714 0.95304 1.02057 1.04151 1.86807 1.08558 1.72468 1.34212 0.91636 0.90809 0.91802 0.89352 0.90106 0.86384 0.91481 0.75665 0.80531 0.91431 0.83405 0.91058 0.88646 0.89608 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.06 37.16 0.34 -0.92 16 2 C -0.05 -0.44 2.63 -30.13 -0.08 -0.52 16 3 H 0.08 0.67 8.11 -51.92 -0.42 0.25 16 4 C -0.13 -1.49 3.51 -29.88 -0.10 -1.60 16 5 C 0.10 1.12 4.88 -4.77 -0.02 1.10 16 6 N -0.58 -7.11 2.42 -174.96 -0.42 -7.53 16 7 C 0.52 7.99 7.49 -11.65 -0.09 7.90 16 8 O -0.53 -8.89 15.86 5.48 0.09 -8.80 16 9 C 0.49 8.49 7.26 -11.65 -0.08 8.40 16 10 O -0.52 -9.41 8.93 5.44 0.05 -9.36 16 11 N -0.58 -10.81 5.45 -10.45 -0.06 -10.87 16 12 C -0.07 -1.54 6.90 -83.92 -0.58 -2.11 16 13 C -0.03 -0.64 10.85 -17.02 -0.18 -0.83 16 14 N -0.26 -7.32 10.39 30.81 0.32 -7.00 16 15 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 16 C -0.32 -8.33 10.25 -14.82 -0.15 -8.48 16 17 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 18 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 19 N -0.77 -20.90 11.81 55.50 0.66 -20.25 16 20 Si 0.94 18.56 29.55 -169.99 -5.02 13.54 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 25 C 0.11 1.08 5.97 -3.67 -0.02 1.06 16 26 C -0.10 -0.83 5.90 37.58 0.22 -0.60 16 27 S -0.25 -2.69 20.95 -107.50 -2.25 -4.94 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 32 H 0.08 1.18 6.75 -51.92 -0.35 0.83 16 33 H 0.12 1.53 5.79 -51.93 -0.30 1.23 16 34 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 35 H 0.41 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.18 4.21 5.92 -52.49 -0.31 3.90 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.07 7.02 -51.93 -0.36 0.71 16 41 H 0.09 0.56 7.91 -51.80 -0.41 0.16 16 42 H 0.12 0.75 8.14 -51.79 -0.42 0.32 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -31.37 352.22 -7.80 -39.17 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.38 Total: 12.02 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.04 Total: 2.48 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.45 Total: -49.41 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.14 Total: -18.16 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.25 Total: -4.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.37 -7.80 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756276753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.666 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds