Wall clock time and date at job start Tue Mar 31 2020 20:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 108.73542 * 2 1 4 4 C 1.45826 * 108.84577 * 118.42902 * 2 1 3 5 5 C 1.53475 * 113.24870 * 185.87062 * 4 2 1 6 6 N 1.44683 * 109.73149 * 278.98474 * 5 4 2 7 7 C 1.34773 * 119.72324 * 278.68478 * 6 5 4 8 8 O 1.21367 * 119.99639 * 185.22184 * 7 6 5 9 9 C 1.49307 * 120.00481 * 4.94751 * 7 6 5 10 10 O 1.21413 * 119.99427 * 355.36641 * 9 7 6 11 11 N 1.34776 * 120.00291 * 175.36222 * 9 7 6 12 12 C 1.40299 * 119.99857 * 180.02562 * 11 9 7 13 13 C 1.40722 * 126.09979 * 359.69112 * 12 11 9 14 14 N 1.30882 * 108.37542 * 179.81558 * 13 12 11 15 15 N 1.40058 * 108.43128 * 0.44110 * 14 13 12 16 16 C 1.37301 * 126.05516 * 179.69419 * 15 14 13 17 17 H 1.07993 * 120.00112 * 180.02562 * 16 15 14 18 18 C 1.39007 * 119.99697 * 0.02870 * 16 15 14 19 19 N 1.31287 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47186 * 120.00118 * 20 18 16 23 23 H 1.48501 * 109.46974 * 239.99971 * 20 18 16 24 24 C 1.35782 * 126.09681 * 180.02562 * 12 11 9 25 25 C 1.46396 * 120.54679 * 98.40975 * 6 5 4 26 26 C 1.53820 * 114.94913 * 317.73354 * 25 6 5 27 27 S 1.79942 * 111.14256 * 316.95402 * 26 25 6 28 28 H 1.09000 * 109.47268 * 178.44149 * 1 2 3 29 29 H 1.08998 * 109.47330 * 298.44235 * 1 2 3 30 30 H 1.09007 * 109.46796 * 58.44307 * 1 2 3 31 31 H 1.08999 * 108.71985 * 306.93127 * 4 2 1 32 32 H 1.09008 * 108.71813 * 64.95944 * 4 2 1 33 33 H 1.09000 * 109.19521 * 158.99110 * 5 4 2 34 34 H 1.08997 * 109.46911 * 39.14545 * 5 4 2 35 35 H 0.96996 * 119.99654 * 0.02562 * 11 9 7 36 36 H 1.07997 * 125.81412 * 0.02562 * 13 12 11 37 37 H 0.96994 * 119.99957 * 180.02562 * 19 18 16 38 38 H 1.08001 * 126.25501 * 359.97438 * 24 12 11 39 39 H 1.08999 * 108.38512 * 79.15559 * 25 6 5 40 40 H 1.08998 * 108.38430 * 196.31638 * 25 6 5 41 41 H 1.08999 * 109.14535 * 77.38605 * 26 25 6 42 42 H 1.09010 * 109.14387 * 196.52878 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8801 1.0322 0.0000 4 6 2.0010 -0.6570 1.2137 5 6 3.5242 -0.5874 1.3880 6 7 4.1552 -1.6124 0.5851 7 6 4.2198 -2.8771 1.0464 8 8 4.8300 -3.7202 0.4220 9 6 3.5461 -3.2396 2.3286 10 8 3.0120 -2.3790 2.9980 11 7 3.5309 -4.5221 2.7427 12 6 2.8974 -4.8627 3.9473 13 6 2.2467 -3.9732 4.8223 14 7 1.7771 -4.6587 5.8335 15 7 2.1160 -6.0053 5.6512 16 6 1.8074 -7.0386 6.5011 17 1 2.1194 -8.0448 6.2634 18 6 1.0932 -6.7894 7.6673 19 7 0.7135 -5.5663 7.9559 20 14 0.6739 -8.1950 8.8240 21 1 1.2124 -9.4653 8.2750 22 1 1.2775 -7.9368 10.1561 23 1 -0.8011 -8.3002 8.9609 24 6 2.8082 -6.1085 4.4799 25 6 4.7185 -1.2884 -0.7266 26 6 3.8548 -0.3539 -1.5908 27 16 2.1187 -0.8213 -1.5163 28 1 -0.3634 -1.0273 -0.0279 29 1 -0.3634 0.4894 0.9036 30 1 -0.3633 0.5379 -0.8758 31 1 1.5270 -0.1843 2.0739 32 1 1.7005 -1.7044 1.1836 33 1 3.7723 -0.7441 2.4378 34 1 3.8816 0.3927 1.0724 35 1 3.9579 -5.2095 2.2080 36 1 2.1483 -2.9070 4.6816 37 1 0.2155 -5.3924 8.7699 38 1 3.2110 -7.0156 4.0539 39 1 5.6902 -0.8177 -0.5768 40 1 4.8724 -2.2183 -1.2740 41 1 3.9653 0.6692 -1.2314 42 1 4.1952 -0.4072 -2.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756276753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:08 Heat of formation + Delta-G solvation = 11.386156 kcal Electronic energy + Delta-G solvation = -27302.393493 eV Core-core repulsion = 23410.615887 eV Total energy + Delta-G solvation = -3891.777606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22296 -41.34877 -39.45915 -38.42341 -36.09183 -35.73803 -34.94822 -32.43274 -32.25136 -30.04769 -29.80152 -27.32786 -26.03673 -25.21553 -23.60799 -22.99186 -22.51635 -21.32383 -20.62109 -19.41162 -18.77396 -18.04605 -17.65125 -17.45016 -16.94740 -16.81458 -16.76250 -16.03625 -15.85060 -15.53750 -15.42866 -15.09174 -14.89366 -14.77276 -14.62662 -14.11509 -14.08475 -13.52826 -13.44886 -13.22942 -12.95837 -12.89827 -12.81633 -12.56464 -12.48802 -12.25946 -12.07796 -12.03231 -11.93627 -11.76519 -11.05741 -10.85590 -10.67509 -10.27159 -10.12463 -9.87085 -8.70529 -8.59532 -8.48499 -6.25422 0.29216 0.69708 1.24775 1.29598 1.41744 1.59552 1.63411 1.72165 2.04984 2.11234 2.47045 2.55439 2.85916 3.07979 3.42244 3.60333 3.67864 3.86784 4.00770 4.16194 4.31566 4.40445 4.44034 4.53342 4.55123 4.58632 4.69495 4.74145 4.82071 4.89696 4.97406 4.98691 4.99678 5.16145 5.20333 5.27550 5.39558 5.43856 5.89446 5.94461 6.23191 6.42545 6.67643 6.76135 7.09173 7.41995 7.64789 8.50829 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002662 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.809409 B =10515.923926 C =11227.653943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 H 0.109 0.891 4 C -0.122 4.122 5 C 0.099 3.901 6 N -0.564 5.564 7 C 0.521 3.479 8 O -0.543 6.543 9 C 0.486 3.514 10 O -0.522 6.522 11 N -0.586 5.586 12 C -0.053 4.053 13 C -0.043 4.043 14 N -0.307 5.307 15 N -0.164 5.164 16 C -0.353 4.353 17 H 0.139 0.861 18 C -0.004 4.004 19 N -0.820 5.820 20 Si 1.018 2.982 21 H -0.243 1.243 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.078 4.078 25 C 0.105 3.895 26 C -0.086 4.086 27 S -0.301 6.301 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.420 0.580 36 H 0.180 0.820 37 H 0.277 0.723 38 H 0.184 0.816 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 11.374 -16.298 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 H 0.127 0.873 4 C -0.162 4.162 5 C -0.023 4.023 6 N -0.296 5.296 7 C 0.304 3.696 8 O -0.421 6.421 9 C 0.268 3.732 10 O -0.399 6.399 11 N -0.231 5.231 12 C -0.160 4.160 13 C -0.219 4.219 14 N -0.139 5.139 15 N 0.068 4.932 16 C -0.484 4.484 17 H 0.157 0.843 18 C -0.216 4.216 19 N -0.448 5.448 20 Si 0.837 3.163 21 H -0.166 1.166 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.229 4.229 25 C -0.019 4.019 26 C -0.235 4.235 27 S -0.074 6.074 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.257 0.743 36 H 0.197 0.803 37 H 0.087 0.913 38 H 0.201 0.799 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.114 11.134 -15.656 19.646 hybrid contribution 0.911 -0.224 0.385 1.014 sum 5.025 10.910 -15.270 19.428 Atomic orbital electron populations 1.21682 0.91677 1.02168 1.03649 1.21960 0.99979 1.01513 0.92927 0.87331 1.20880 0.96555 1.01153 0.97598 1.21884 0.91870 0.91152 0.97431 1.47230 1.56250 1.07351 1.18750 1.19787 0.81002 0.83389 0.85470 1.90713 1.42801 1.49354 1.59249 1.20113 0.82791 0.83068 0.87217 1.90593 1.45070 1.47602 1.56661 1.42119 1.52063 1.08820 1.20081 1.17274 1.13014 0.93201 0.92473 1.24270 1.03273 1.00528 0.93827 1.78149 1.25388 0.87621 1.22707 1.44820 1.30118 1.05673 1.12636 1.20654 1.37565 0.88055 1.02156 0.84338 1.26841 0.94790 1.00609 0.99360 1.70373 1.28910 1.21807 1.23665 0.84545 0.78289 0.76833 0.76615 1.16595 1.19676 1.19711 1.21979 1.09766 0.98502 0.92622 1.21864 0.96667 1.01207 0.82148 1.23775 0.92080 1.02567 1.05098 1.87083 1.11846 1.73488 1.34956 0.93831 0.89894 0.90708 0.89335 0.93837 0.88287 0.87603 0.74326 0.80312 0.91275 0.79913 0.88192 0.90106 0.87058 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.06 71.98 0.65 -1.71 16 2 C -0.04 -0.63 2.63 28.39 0.07 -0.56 16 3 H 0.11 1.38 8.11 -2.39 -0.02 1.36 16 4 C -0.12 -2.68 3.51 28.56 0.10 -2.58 16 5 C 0.10 2.00 4.88 86.88 0.42 2.43 16 6 N -0.56 -12.81 2.42 -825.80 -1.99 -14.80 16 7 C 0.52 15.62 7.49 87.23 0.65 16.27 16 8 O -0.54 -17.84 15.86 -3.30 -0.05 -17.90 16 9 C 0.49 17.02 7.26 87.22 0.63 17.66 16 10 O -0.52 -19.32 8.93 -3.44 -0.03 -19.35 16 11 N -0.59 -21.75 5.45 -305.32 -1.66 -23.41 16 12 C -0.05 -2.44 6.90 37.82 0.26 -2.18 16 13 C -0.04 -2.25 10.85 85.44 0.93 -1.32 16 14 N -0.31 -17.94 10.39 -56.43 -0.59 -18.53 16 15 N -0.16 -9.02 3.73 -189.98 -0.71 -9.73 16 16 C -0.35 -18.54 10.25 84.02 0.86 -17.68 16 17 H 0.14 6.37 7.83 -2.91 -0.02 6.34 16 18 C 0.00 -0.20 5.50 84.96 0.47 0.27 16 19 N -0.82 -46.28 11.81 21.66 0.26 -46.03 16 20 Si 1.02 38.14 29.55 68.60 2.03 40.17 16 21 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 22 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 24 C -0.08 -3.63 11.50 83.41 0.96 -2.67 16 25 C 0.10 1.73 5.97 86.68 0.52 2.24 16 26 C -0.09 -1.06 5.90 72.26 0.43 -0.63 16 27 S -0.30 -5.99 20.95 -56.49 -1.18 -7.17 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.93 8.00 -2.39 -0.02 1.92 16 32 H 0.04 1.29 6.75 -2.38 -0.02 1.27 16 33 H 0.10 2.45 5.79 -2.39 -0.01 2.44 16 34 H 0.11 1.38 7.51 -2.39 -0.02 1.36 16 35 H 0.42 13.53 8.30 -92.71 -0.77 12.77 16 36 H 0.18 8.90 5.92 -2.91 -0.02 8.89 16 37 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.18 6.93 8.06 -2.91 -0.02 6.91 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.63 7.02 -2.39 -0.02 1.62 16 41 H 0.11 0.87 7.91 -2.47 -0.02 0.85 16 42 H 0.14 1.19 8.14 -2.47 -0.02 1.17 16 Total: -1.00 -71.71 352.22 3.32 -68.40 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.30 Total: 38.81 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.96 Total: 9.54 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.70 Total: -112.50 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.08 Total: -37.25 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.18 Total: -7.17 kcal Total: -71.71 3.32 -68.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756276753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.786 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds