Wall clock time and date at job start Tue Mar 31 2020 20:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52564 * 1 3 3 H 1.11153 * 106.86669 * 2 1 4 4 C 1.50667 * 111.27965 * 116.54305 * 2 1 3 5 5 O 1.22728 * 117.70188 * 245.60255 * 4 2 1 6 6 N 1.32658 * 124.97232 * 65.55929 * 4 2 1 7 7 C 1.46612 * 124.09412 * 2.50527 * 6 4 2 8 8 C 1.52999 * 108.79625 * 61.79109 * 7 6 4 9 9 C 1.51657 * 110.66383 * 277.52104 * 8 7 6 10 10 N 1.44635 * 114.77111 * 71.82724 * 9 8 7 11 11 C 1.46892 * 111.66981 * 161.19629 * 10 9 8 12 12 C 1.50708 * 109.47187 * 192.29091 * 11 10 9 13 13 C 1.38115 * 120.02315 * 253.54234 * 12 11 10 14 14 C 1.38386 * 120.05070 * 179.97438 * 13 12 11 15 15 Cl 1.73604 * 119.94060 * 179.97438 * 14 13 12 16 16 C 1.38426 * 120.11386 * 0.02562 * 14 13 12 17 17 C 1.38069 * 120.05838 * 359.97438 * 16 14 13 18 18 C 1.38854 * 120.03191 * 73.26438 * 12 11 10 19 19 O 1.35768 * 120.05346 * 0.02562 * 18 12 11 20 20 C 1.34825 * 117.00065 * 185.03121 * 19 18 12 21 21 H 1.08005 * 119.99809 * 354.93917 * 20 19 18 22 22 C 1.38652 * 119.99919 * 174.94785 * 20 19 18 23 23 N 1.31564 * 119.99625 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00130 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46779 * 90.00360 * 24 22 20 26 26 H 1.48499 * 109.47063 * 210.00385 * 24 22 20 27 27 H 1.48496 * 109.46938 * 330.00292 * 24 22 20 28 28 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47439 * 300.00305 * 1 2 3 30 30 H 1.08999 * 109.46836 * 59.99992 * 1 2 3 31 31 H 0.98371 * 117.89157 * 182.42634 * 6 4 2 32 32 H 1.08695 * 111.01489 * 300.25844 * 7 6 4 33 33 H 1.09618 * 109.24680 * 180.61079 * 7 6 4 34 34 H 1.09044 * 109.22410 * 157.31926 * 8 7 6 35 35 H 1.08982 * 109.31898 * 37.91356 * 8 7 6 36 36 H 1.08664 * 108.99467 * 306.69905 * 9 8 7 37 37 H 1.10018 * 107.24671 * 191.62359 * 9 8 7 38 38 H 1.09001 * 109.46968 * 312.28456 * 11 10 9 39 39 H 1.09001 * 109.47359 * 72.28818 * 11 10 9 40 40 H 1.07994 * 119.97635 * 359.97438 * 13 12 11 41 41 H 1.08008 * 119.97334 * 179.97438 * 16 14 13 42 42 H 1.07995 * 120.02817 * 180.02562 * 17 16 14 43 43 H 0.96996 * 119.99983 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5256 0.0000 0.0000 3 1 1.8481 1.0637 0.0000 4 6 2.0724 -0.6274 1.2560 5 8 2.6977 0.0931 2.0281 6 7 1.9293 -1.9023 1.5936 7 6 1.2569 -2.9029 0.7593 8 6 2.0181 -3.0357 -0.5612 9 6 1.6038 -1.9447 -1.5298 10 7 2.0802 -0.6215 -1.1920 11 6 2.0382 0.2820 -2.3495 12 6 2.8130 1.5361 -2.0362 13 6 2.1433 2.7181 -1.7870 14 6 2.8542 3.8699 -1.4988 15 17 2.0095 5.3541 -1.1867 16 6 4.2376 3.8408 -1.4599 17 6 4.9118 2.6617 -1.7083 18 6 4.2005 1.5030 -1.9921 19 8 4.8609 0.3412 -2.2317 20 6 6.1994 0.3536 -2.0709 21 1 6.7076 1.2794 -1.8446 22 6 6.9237 -0.8220 -2.1964 23 7 8.2299 -0.8097 -2.0401 24 14 6.0448 -2.4232 -2.5874 25 1 5.9735 -2.6019 -4.0599 26 1 6.7918 -3.5574 -1.9867 27 1 4.6704 -2.3832 -2.0265 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.2987 -2.1938 2.4575 32 1 0.2234 -2.6233 0.5719 33 1 1.2680 -3.8700 1.2752 34 1 1.8019 -4.0084 -1.0040 35 1 3.0882 -2.9592 -0.3698 36 1 0.5220 -1.9541 -1.6315 37 1 2.0150 -2.2100 -2.5152 38 1 2.4822 -0.2131 -3.2131 39 1 1.0028 0.5405 -2.5713 40 1 1.0641 2.7435 -1.8172 41 1 4.7902 4.7412 -1.2351 42 1 5.9911 2.6395 -1.6774 43 1 8.7366 -1.6322 -2.1275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788275161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:18 Heat of formation + Delta-G solvation = -57.224897 kcal Electronic energy + Delta-G solvation = -28713.353787 eV Core-core repulsion = 24784.264525 eV Total energy + Delta-G solvation = -3929.089262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57693 -40.80617 -38.73156 -38.26919 -37.06174 -36.30712 -34.43659 -33.15833 -32.89747 -30.95811 -30.26217 -27.55278 -27.05235 -26.13844 -25.03854 -23.31130 -22.29169 -21.65949 -20.28994 -19.83268 -18.99856 -18.24853 -17.94017 -17.05312 -16.88619 -16.62221 -16.09114 -15.84159 -15.63541 -15.47885 -15.28675 -14.97352 -14.70855 -14.46686 -14.34926 -14.10971 -13.90869 -13.88193 -13.63627 -13.33945 -13.11026 -12.90049 -12.81806 -12.64899 -12.50761 -12.30210 -12.02445 -11.89362 -11.79028 -11.73954 -11.56667 -11.25581 -10.91843 -10.84468 -10.07932 -9.84413 -8.97867 -8.93708 -8.48209 -6.19021 0.33921 0.46064 1.31857 1.32928 1.38538 1.54395 1.59271 2.32566 2.37836 2.59627 2.91848 3.04097 3.22060 3.55523 3.78284 3.92310 3.94055 4.03155 4.05096 4.22137 4.25435 4.38075 4.44602 4.53900 4.55021 4.62608 4.73071 4.75521 4.80322 4.87478 4.92037 5.02175 5.06212 5.16743 5.25796 5.29803 5.43872 5.48774 5.72230 5.73712 5.82074 6.08613 6.16576 6.36720 6.50752 6.86333 7.22982 7.58415 8.62825 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008263 B = 0.006591 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.611958 B = 4246.961422 C = 6558.994934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.083 0.917 4 C 0.521 3.479 5 O -0.624 6.624 6 N -0.705 5.705 7 C 0.106 3.894 8 C -0.147 4.147 9 C 0.069 3.931 10 N -0.577 5.577 11 C 0.139 3.861 12 C -0.146 4.146 13 C -0.052 4.052 14 C -0.108 4.108 15 Cl -0.074 7.074 16 C -0.063 4.063 17 C -0.236 4.236 18 C 0.156 3.844 19 O -0.206 6.206 20 C -0.394 4.394 21 H 0.074 0.926 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.231 1.231 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 -4.187 0.504 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 H 0.101 0.899 4 C 0.308 3.692 5 O -0.507 6.507 6 N -0.354 5.354 7 C -0.017 4.017 8 C -0.185 4.185 9 C -0.057 4.057 10 N -0.303 5.303 11 C 0.014 3.986 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.135 4.135 15 Cl -0.046 7.046 16 C -0.082 4.082 17 C -0.255 4.255 18 C 0.104 3.896 19 O -0.111 6.111 20 C -0.471 4.471 21 H 0.091 0.909 22 C -0.189 4.189 23 N -0.567 5.567 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.154 1.154 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.237 0.763 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.132 0.868 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.218 -4.076 0.714 21.618 hybrid contribution 0.784 0.031 0.275 0.831 sum -20.435 -4.045 0.989 20.854 Atomic orbital electron populations 1.22229 0.92411 1.04171 1.04010 1.21273 0.95442 0.98474 0.86204 0.89856 1.21039 0.77962 0.82495 0.87709 1.91113 1.43943 1.61976 1.53681 1.45896 1.57652 1.08315 1.23583 1.22021 0.96447 0.92139 0.91050 1.21990 1.00272 0.99914 0.96362 1.21249 0.99247 0.86057 0.99148 1.57499 1.64904 1.03704 1.04187 1.20568 0.98176 0.88611 0.91260 1.19111 0.89536 0.96674 1.09465 1.20802 1.00513 0.89152 0.96623 1.20521 0.91893 0.88442 1.12658 1.98302 1.77626 1.33868 1.94782 1.20852 0.92833 0.97529 0.96999 1.21232 1.00529 0.93444 1.10305 1.19389 0.92208 0.85576 0.92405 1.83567 1.20263 1.30095 1.77202 1.20675 0.79304 0.97453 1.49619 0.90852 1.25321 0.95528 1.02238 0.95784 1.69759 1.06913 1.30441 1.49574 0.85272 0.80648 0.76524 0.78826 1.19315 1.20868 1.15400 0.89904 0.91487 0.89532 0.76284 0.88463 0.86424 0.86735 0.94022 0.91546 0.91641 0.90348 0.90364 0.82156 0.84516 0.86765 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.72 71.84 0.63 -2.41 16 2 C 0.10 2.79 2.10 44.29 0.09 2.88 16 3 H 0.08 2.91 5.52 -1.22 -0.01 2.90 16 4 C 0.52 17.59 6.86 87.97 0.60 18.20 16 5 O -0.62 -28.26 17.73 -7.75 -0.14 -28.39 16 6 N -0.71 -17.21 5.16 -463.77 -2.39 -19.60 16 7 C 0.11 1.56 6.39 86.36 0.55 2.11 16 8 C -0.15 -2.87 5.82 30.15 0.18 -2.70 16 9 C 0.07 1.49 4.63 86.29 0.40 1.89 16 10 N -0.58 -16.81 4.01 -889.08 -3.57 -20.37 16 11 C 0.14 3.95 4.74 85.56 0.41 4.36 16 12 C -0.15 -5.15 4.13 -19.74 -0.08 -5.23 16 13 C -0.05 -1.57 8.40 22.28 0.19 -1.39 16 14 C -0.11 -3.54 6.32 22.35 0.14 -3.39 16 15 Cl -0.07 -2.03 28.95 -2.72 -0.08 -2.11 16 16 C -0.06 -2.35 9.82 22.27 0.22 -2.13 16 17 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 18 C 0.16 7.06 6.62 22.57 0.15 7.21 16 19 O -0.21 -10.63 7.95 -22.88 -0.18 -10.81 16 20 C -0.39 -23.05 9.95 67.92 0.68 -22.38 16 21 H 0.07 4.60 5.43 -2.91 -0.02 4.58 16 22 C 0.01 0.54 5.49 84.83 0.47 1.01 16 23 N -0.93 -56.20 13.96 21.61 0.30 -55.90 16 24 Si 0.97 44.19 28.62 68.60 1.96 46.15 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.23 -10.04 6.96 99.48 0.69 -9.34 16 28 H 0.08 1.10 4.81 -2.39 -0.01 1.09 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.26 7.32 -2.39 -0.02 1.24 16 31 H 0.40 9.19 8.88 -91.67 -0.81 8.37 16 32 H 0.10 0.99 5.86 -2.55 -0.01 0.98 16 33 H 0.12 0.98 8.19 -2.06 -0.02 0.96 16 34 H 0.11 1.47 8.15 -2.36 -0.02 1.45 16 35 H 0.04 1.21 7.95 -2.40 -0.02 1.19 16 36 H 0.07 0.95 6.83 -2.56 -0.02 0.93 16 37 H 0.07 1.49 7.70 -1.84 -0.01 1.48 16 38 H 0.08 2.37 7.65 -2.39 -0.02 2.35 16 39 H 0.08 1.57 7.10 -2.39 -0.02 1.55 16 40 H 0.16 3.62 7.99 -2.91 -0.02 3.60 16 41 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.11 5.67 5.64 -2.91 -0.02 5.66 16 43 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -77.56 356.25 0.98 -76.59 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.25 Total: 26.80 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.82 Total: -12.36 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -5.66 Total: -95.87 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.32 Total: -39.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.96 Total: 46.15 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -77.56 0.98 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788275161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.361 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds