Wall clock time and date at job start Tue Mar 31 2020 21:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46831 * 2 1 4 4 S 1.80998 * 109.47099 * 240.00289 * 2 1 3 5 5 C 1.76197 * 100.00096 * 64.99455 * 4 2 1 6 6 N 1.31549 * 126.45631 * 0.18786 * 5 4 2 7 7 N 1.28414 * 110.49993 * 180.28114 * 6 5 4 8 8 N 1.28903 * 110.34767 * 359.72552 * 7 6 5 9 9 N 1.35395 * 126.45340 * 180.02562 * 5 4 2 10 10 C 1.46500 * 127.38375 * 0.02562 * 9 5 4 11 11 C 1.53005 * 117.49948 * 239.70820 * 10 9 5 12 12 C 1.53005 * 60.03330 * 252.50248 * 11 10 9 13 13 C 1.50700 * 109.47268 * 119.99834 * 2 1 3 14 14 O 1.20829 * 119.99501 * 100.00190 * 13 2 1 15 15 O 1.34226 * 120.00208 * 280.00206 * 13 2 1 16 16 C 1.45196 * 116.99963 * 175.19186 * 15 13 2 17 17 C 1.50701 * 112.85075 * 54.50181 * 16 15 13 18 18 H 1.08002 * 120.00209 * 244.95207 * 17 16 15 19 19 C 1.37880 * 119.99842 * 64.95512 * 17 16 15 20 20 N 1.31511 * 120.00094 * 354.95842 * 19 17 16 21 21 Si 1.86800 * 119.99764 * 174.95472 * 19 17 16 22 22 H 1.48508 * 109.47023 * 60.00612 * 21 19 17 23 23 H 1.48508 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47489 * 300.00320 * 21 19 17 25 25 C 1.53782 * 113.61196 * 283.19625 * 16 15 13 26 26 C 1.53787 * 87.07938 * 220.02028 * 25 16 15 27 27 C 1.53782 * 113.61199 * 185.69923 * 16 15 13 28 28 H 1.09006 * 109.47227 * 299.99385 * 1 2 3 29 29 H 1.08997 * 109.47555 * 59.99718 * 1 2 3 30 30 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.08996 * 115.55399 * 25.37595 * 10 9 5 32 32 H 1.08998 * 117.49618 * 359.97438 * 11 10 9 33 33 H 1.08995 * 117.50088 * 144.99818 * 11 10 9 34 34 H 1.08988 * 117.50376 * 107.50226 * 12 11 10 35 35 H 1.09001 * 117.49404 * 252.52840 * 12 11 10 36 36 H 0.96999 * 119.99898 * 184.99494 * 20 19 17 37 37 H 1.08993 * 113.61382 * 334.56788 * 25 16 15 38 38 H 1.09003 * 113.61257 * 105.47611 * 25 16 15 39 39 H 1.09004 * 113.60891 * 270.88332 * 26 25 16 40 40 H 1.08995 * 113.68824 * 139.99234 * 26 25 16 41 41 H 1.09001 * 113.61725 * 254.52208 * 27 16 15 42 42 H 1.08998 * 113.61499 * 25.34780 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 -1.4779 5 6 1.5438 0.2423 -2.7257 6 7 0.8646 1.3525 -2.5340 7 7 0.5858 1.9088 -3.6573 8 7 1.0614 1.2128 -4.6324 9 7 1.7070 0.1015 -4.0624 10 6 2.4018 -0.9804 -4.7645 11 6 3.5944 -0.6001 -5.6444 12 6 2.2751 -1.0296 -6.2893 13 6 2.0323 -0.7104 1.2305 14 8 2.4051 -1.8573 1.1560 15 8 2.0657 -0.0690 2.4091 16 6 2.4592 -0.8455 3.5712 17 6 3.7878 -1.5340 3.3925 18 1 3.8386 -2.6127 3.3725 19 6 4.9384 -0.7869 3.2546 20 7 4.8661 0.5241 3.1795 21 14 6.5999 -1.6369 3.1748 22 1 6.6290 -2.5585 2.0106 23 1 7.6703 -0.6183 3.0259 24 1 6.8212 -2.4095 4.4235 25 6 1.3497 -1.7708 4.0982 26 6 1.8035 -1.3783 5.5142 27 6 2.3379 -0.0752 4.8966 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.4516 -1.9303 -4.2325 32 1 3.8618 0.4550 -5.7010 33 1 4.4288 -1.2999 -5.6911 34 1 1.6749 -0.2572 -6.7699 35 1 2.2414 -2.0122 -6.7599 36 1 5.6666 1.0450 3.0100 37 1 0.3439 -1.4305 3.8520 38 1 1.5109 -2.8231 3.8640 39 1 2.5846 -2.0232 5.9167 40 1 0.9798 -1.2253 6.2114 41 1 3.2967 0.2413 5.3071 42 1 1.6032 0.7295 4.8683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:12 Heat of formation + Delta-G solvation = 91.762075 kcal Electronic energy + Delta-G solvation = -27206.002240 eV Core-core repulsion = 23317.709995 eV Total energy + Delta-G solvation = -3888.292245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.91717 -39.49202 -38.01631 -37.32174 -34.34376 -33.28725 -33.22793 -32.34792 -31.89585 -26.32894 -25.52394 -24.80974 -24.62746 -23.51028 -22.95742 -22.86739 -21.83297 -20.16290 -18.64834 -18.44106 -17.21441 -17.08904 -16.57868 -15.69683 -15.58473 -15.39615 -14.99248 -14.73145 -14.56445 -13.96179 -13.92772 -13.43787 -13.30903 -12.92454 -12.54232 -12.40567 -12.28435 -12.07358 -11.93822 -11.86161 -11.65313 -11.29654 -11.20097 -11.06579 -10.98511 -10.93460 -10.86339 -10.51451 -10.39217 -10.34173 -10.13689 -10.03777 -9.88449 -9.46451 -8.91672 -8.64479 -8.58893 -7.99670 -6.17581 -4.27464 0.64656 0.76094 1.76649 1.85082 2.15347 3.11980 3.24221 3.25783 3.29252 3.33151 3.73067 3.83600 4.19122 4.30866 4.30967 4.51413 4.97646 5.00089 5.09755 5.11035 5.20956 5.25026 5.27884 5.46609 5.52821 5.57726 5.68740 5.78158 5.83355 5.87984 5.97918 6.04841 6.23642 6.31867 6.44123 6.57330 6.80527 7.03993 7.24687 7.45794 7.66420 7.80497 8.24134 8.34321 8.73719 8.99487 9.40201 10.86846 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.003503 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.085908 B = 7991.731388 C = 9058.916213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.132 0.868 4 S 0.107 5.893 5 C 0.212 3.788 6 N -0.333 5.333 7 N -0.034 5.034 8 N -0.092 5.092 9 N -0.339 5.339 10 C 0.059 3.941 11 C -0.165 4.165 12 C -0.155 4.155 13 C 0.487 3.513 14 O -0.488 6.488 15 O -0.337 6.337 16 C 0.238 3.762 17 C -0.506 4.506 18 H 0.069 0.931 19 C 0.075 3.925 20 N -0.864 5.864 21 Si 0.893 3.107 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.161 4.161 26 C -0.130 4.130 27 C -0.106 4.106 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.265 0.735 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -3.103 -12.471 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.223 4.223 3 H 0.150 0.850 4 S 0.333 5.667 5 C -0.171 4.171 6 N -0.190 5.190 7 N -0.029 5.029 8 N -0.078 5.078 9 N -0.136 5.136 10 C -0.045 4.045 11 C -0.203 4.203 12 C -0.193 4.193 13 C 0.326 3.674 14 O -0.376 6.376 15 O -0.253 6.253 16 C 0.204 3.796 17 C -0.544 4.544 18 H 0.087 0.913 19 C -0.131 4.131 20 N -0.500 5.500 21 Si 0.720 3.280 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.199 4.199 26 C -0.168 4.168 27 C -0.144 4.144 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.175 0.825 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.076 -3.089 -12.923 14.224 hybrid contribution 0.861 0.026 0.038 0.862 sum -4.214 -3.062 -12.885 13.898 Atomic orbital electron populations 1.22018 0.89647 1.03560 1.04898 1.23460 1.01942 1.04938 0.91989 0.84961 1.86412 1.65980 1.22460 0.91798 1.28213 0.99420 0.99675 0.89819 1.74978 1.18900 1.06159 1.18979 1.77828 1.12835 1.19191 0.93060 1.82379 1.12501 0.94287 1.18681 1.50902 1.39747 1.19424 1.03543 1.22232 1.00599 0.89026 0.92664 1.23537 0.92271 1.04144 1.00374 1.23417 1.00035 1.04904 0.90951 1.21573 0.76013 0.85126 0.84717 1.90619 1.42929 1.18073 1.85963 1.86471 1.77153 1.45813 1.15839 1.21349 0.91977 0.87612 0.78639 1.20895 0.88958 0.93285 1.51230 0.91299 1.25051 0.99348 0.94771 0.93920 1.70003 1.29566 1.04679 1.45772 0.86632 0.82952 0.79411 0.79046 1.19896 1.21120 1.19828 1.23569 0.98491 1.00777 0.97074 1.22512 0.99803 0.99160 0.95310 1.22897 1.00749 0.95284 0.95431 0.89918 0.89851 0.91336 0.82461 0.87571 0.86266 0.86793 0.86479 0.92539 0.91944 0.91923 0.90167 0.92845 0.90444 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.99 37.16 0.33 -1.75 16 2 C -0.09 -1.61 2.80 -27.88 -0.08 -1.68 16 3 H 0.13 2.33 8.14 -51.91 -0.42 1.91 16 4 S 0.11 1.66 20.65 -107.50 -2.22 -0.56 16 5 C 0.21 3.19 7.83 -89.17 -0.70 2.49 16 6 N -0.33 -5.51 9.71 30.50 0.30 -5.21 16 7 N -0.03 -0.56 13.38 60.35 0.81 0.25 16 8 N -0.09 -1.36 13.45 60.35 0.81 -0.55 16 9 N -0.34 -4.50 4.01 -54.76 -0.22 -4.72 16 10 C 0.06 0.54 6.74 -67.88 -0.46 0.09 16 11 C -0.16 -1.20 10.45 -26.73 -0.28 -1.48 16 12 C -0.16 -1.05 10.23 -26.69 -0.27 -1.32 16 13 C 0.49 10.62 6.78 36.01 0.24 10.86 16 14 O -0.49 -11.65 14.36 -18.75 -0.27 -11.92 16 15 O -0.34 -8.04 9.93 -39.25 -0.39 -8.43 16 16 C 0.24 5.69 0.50 -90.96 -0.05 5.64 16 17 C -0.51 -13.37 6.29 -34.44 -0.22 -13.58 16 18 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.08 1.99 5.24 -17.82 -0.09 1.90 16 20 N -0.86 -23.56 12.54 55.43 0.70 -22.87 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.16 -3.33 7.28 -25.92 -0.19 -3.52 16 26 C -0.13 -2.49 7.81 -25.91 -0.20 -2.69 16 27 C -0.11 -2.32 7.19 -25.92 -0.19 -2.50 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.19 5.91 -51.93 -0.31 0.88 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.16 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.89 7.91 -51.94 -0.41 0.48 16 35 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.84 7.63 -51.93 -0.40 1.44 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -30.82 372.20 -7.77 -38.59 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.73 Total: 1.62 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.14 Total: -7.56 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 2.39 Total: -33.09 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.66 Total: -20.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.22 Total: -0.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.82 -7.77 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.349 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds