Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09003 * 109.74338 * 2 1 4 4 C 1.53817 * 109.75774 * 239.37765 * 2 1 3 5 5 N 1.46962 * 108.57789 * 289.94841 * 4 2 1 6 6 C 1.34777 * 120.59445 * 124.67413 * 5 4 2 7 7 O 1.21586 * 120.00022 * 2.00157 * 6 5 4 8 8 C 1.47534 * 119.99979 * 182.00915 * 6 5 4 9 9 C 1.39727 * 120.18533 * 326.25912 * 8 6 5 10 10 C 1.37780 * 119.93289 * 179.72011 * 9 8 6 11 11 C 1.38547 * 120.30518 * 0.53797 * 10 9 8 12 12 C 1.38148 * 120.37886 * 359.75895 * 11 10 9 13 13 Cl 1.73599 * 119.96875 * 179.97438 * 12 11 10 14 14 C 1.38818 * 120.06158 * 359.95940 * 12 11 10 15 15 O 1.35671 * 120.15435 * 179.97438 * 14 12 11 16 16 C 1.46964 * 118.81145 * 304.64760 * 5 4 2 17 17 C 1.53364 * 108.63663 * 55.22715 * 16 5 4 18 18 H 1.09001 * 109.61184 * 70.32405 * 17 16 5 19 19 C 1.53007 * 109.61136 * 190.83345 * 17 16 5 20 20 N 1.46961 * 108.63732 * 310.57594 * 17 16 5 21 21 C 1.36935 * 120.60017 * 235.20375 * 20 17 16 22 22 H 1.07999 * 119.99865 * 39.10688 * 21 20 17 23 23 C 1.38810 * 120.00363 * 219.11710 * 21 20 17 24 24 N 1.31620 * 120.00190 * 1.14461 * 23 21 20 25 25 Si 1.86799 * 120.00114 * 181.15101 * 23 21 20 26 26 H 1.48499 * 109.47045 * 179.97438 * 25 23 21 27 27 H 1.48505 * 109.46865 * 299.99518 * 25 23 21 28 28 H 1.48499 * 109.47187 * 59.99273 * 25 23 21 29 29 H 1.08994 * 109.46811 * 299.56987 * 1 2 3 30 30 H 1.09000 * 109.46672 * 59.57067 * 1 2 3 31 31 H 1.08994 * 109.46692 * 179.56880 * 1 2 3 32 32 H 1.09001 * 109.73631 * 170.15489 * 4 2 1 33 33 H 1.09000 * 109.67368 * 49.69619 * 4 2 1 34 34 H 1.08003 * 120.03853 * 0.02562 * 9 8 6 35 35 H 1.07991 * 119.85050 * 180.25423 * 10 9 8 36 36 H 1.08001 * 119.81308 * 179.74031 * 11 10 9 37 37 H 0.96695 * 114.00531 * 270.02321 * 15 14 12 38 38 H 1.09004 * 109.60831 * 295.48507 * 16 5 4 39 39 H 1.08996 * 109.75392 * 175.05879 * 16 5 4 40 40 H 1.08999 * 109.47019 * 179.14944 * 19 17 16 41 41 H 1.09004 * 109.46635 * 299.14708 * 19 17 16 42 42 H 1.08995 * 109.47285 * 59.14388 * 19 17 16 43 43 H 0.96992 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0501 -0.7374 -1.2457 5 7 1.7611 -2.1705 -1.0962 6 6 1.0611 -2.8312 -2.0396 7 8 0.6940 -2.2503 -3.0426 8 6 0.7403 -4.2594 -1.8552 9 6 1.6361 -5.1005 -1.1899 10 6 1.3286 -6.4322 -1.0155 11 6 0.1390 -6.9451 -1.5067 12 6 -0.7531 -6.1264 -2.1718 13 17 -2.2403 -6.7805 -2.7835 14 6 -0.4616 -4.7811 -2.3511 15 8 -1.3362 -3.9755 -3.0044 16 6 2.2495 -2.8705 0.1002 17 6 1.7344 -2.1344 1.3432 18 1 0.6586 -2.2829 1.4367 19 6 2.4408 -2.6734 2.5888 20 7 2.0233 -0.7012 1.1937 21 6 2.7345 -0.0299 2.1521 22 1 3.5741 -0.5075 2.6352 23 6 2.3763 1.2645 2.5030 24 7 1.3392 1.8384 1.9308 25 14 3.3661 2.1919 3.7873 26 1 2.7832 3.5441 3.9801 27 1 3.3292 1.4486 5.0725 28 1 4.7731 2.3205 3.3301 29 1 -0.3633 0.5071 0.8938 30 1 -0.3633 0.5205 -0.8861 31 1 -0.3632 -1.0276 -0.0077 32 1 3.1259 -0.5888 -1.3391 33 1 1.5493 -0.3540 -2.1348 34 1 2.5663 -4.7062 -0.8085 35 1 2.0200 -7.0801 -0.4976 36 1 -0.0921 -7.9911 -1.3692 37 1 -1.1916 -3.9305 -3.9594 38 1 3.3395 -2.8738 0.1026 39 1 1.8806 -3.8961 0.1033 40 1 2.0841 -2.1384 3.4689 41 1 2.2250 -3.7363 2.6974 42 1 3.5164 -2.5296 2.4873 43 1 1.0891 2.7429 2.1757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880456917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -3.747037 kcal Electronic energy + Delta-G solvation = -28419.018511 eV Core-core repulsion = 24492.248222 eV Total energy + Delta-G solvation = -3926.770288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73762 -38.94710 -37.30968 -36.81208 -36.59798 -34.11703 -32.81354 -31.78978 -30.66555 -30.00386 -27.94966 -26.38199 -25.84026 -24.10607 -23.19313 -22.80218 -20.98165 -20.07217 -18.92978 -18.20249 -17.43287 -16.47587 -16.19058 -15.97840 -15.33874 -15.13978 -15.06428 -14.86059 -14.33804 -13.97112 -13.58935 -13.42857 -13.24658 -13.16361 -12.67911 -12.40809 -12.32023 -11.97566 -11.82376 -11.67570 -11.33989 -11.26069 -11.10734 -10.94930 -10.84270 -10.68057 -10.65683 -10.57760 -10.18388 -10.04729 -9.81247 -9.73936 -9.37237 -9.03837 -8.78256 -8.47639 -8.18693 -6.49967 -5.83744 -3.41612 0.61038 0.82979 1.86909 2.83573 3.26797 3.33632 3.39429 3.40203 3.59080 3.95706 4.40685 4.47689 4.60442 4.85547 4.91321 5.15645 5.26198 5.34762 5.40295 5.58693 5.63235 5.76443 5.82263 5.86995 5.99675 6.05178 6.15422 6.22810 6.26825 6.30045 6.36068 6.49951 6.65266 6.79902 6.90930 6.95644 7.04885 7.09379 7.52711 7.61866 7.68942 7.78243 7.89530 8.47295 8.49181 9.18427 9.74802 10.37945 11.22143 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.003348 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.675750 B = 8360.876186 C = 8899.689299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.182 3.818 3 H 0.106 0.894 4 C 0.092 3.908 5 N -0.582 5.582 6 C 0.557 3.443 7 O -0.543 6.543 8 C -0.139 4.139 9 C -0.081 4.081 10 C -0.127 4.127 11 C -0.079 4.079 12 C -0.075 4.075 13 Cl -0.057 7.057 14 C 0.173 3.827 15 O -0.472 6.472 16 C 0.061 3.939 17 C 0.154 3.846 18 H 0.031 0.969 19 C -0.133 4.133 20 N -0.580 5.580 21 C -0.259 4.259 22 H 0.065 0.935 23 C 0.016 3.984 24 N -0.895 5.895 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -17.339 -6.857 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 H 0.123 0.877 4 C -0.031 4.031 5 N -0.312 5.312 6 C 0.345 3.655 7 O -0.422 6.422 8 C -0.143 4.143 9 C -0.100 4.100 10 C -0.145 4.145 11 C -0.098 4.098 12 C -0.102 4.102 13 Cl -0.028 7.028 14 C 0.125 3.875 15 O -0.284 6.284 16 C -0.063 4.063 17 C 0.047 3.953 18 H 0.049 0.951 19 C -0.191 4.191 20 N -0.303 5.303 21 C -0.389 4.389 22 H 0.083 0.917 23 C -0.184 4.184 24 N -0.538 5.538 25 Si 0.731 3.269 26 H -0.217 1.217 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.739 -16.758 -6.847 18.118 hybrid contribution 0.411 0.428 0.304 0.667 sum -0.328 -16.331 -6.543 17.596 Atomic orbital electron populations 1.21975 0.98006 0.98501 1.01166 1.20823 0.92381 0.96668 0.82580 0.87658 1.22661 0.99980 0.78745 1.01739 1.47852 1.52521 1.10949 1.19872 1.17851 0.78672 0.85443 0.83571 1.90722 1.53949 1.68653 1.28920 1.20430 0.94975 0.95462 1.03427 1.21881 1.00124 0.93203 0.94758 1.21084 0.96993 0.95227 1.01182 1.21129 0.92931 0.99980 0.95781 1.21294 0.91148 0.92767 1.05029 1.98371 1.32584 1.85503 1.86331 1.18087 0.87813 0.86773 0.94839 1.84726 1.52322 1.66174 1.25132 1.23329 0.99144 0.97138 0.86656 1.20802 0.96449 0.86797 0.91298 0.95140 1.21739 1.00706 0.98012 0.98660 1.44052 1.62993 1.03069 1.20231 1.18987 1.07712 0.97069 1.15119 0.91745 1.25393 0.96107 0.99083 0.97848 1.69888 1.26485 1.14072 1.43337 0.86417 0.79488 0.78974 0.82048 1.21662 1.20880 1.20963 0.90497 0.95377 0.96077 0.92168 0.90102 0.82639 0.84139 0.84305 0.74142 0.91287 0.88681 0.91488 0.94238 0.92634 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.93 37.16 0.33 -2.85 16 2 C 0.18 4.16 2.34 -67.25 -0.16 4.00 16 3 H 0.11 2.70 6.30 -51.93 -0.33 2.37 16 4 C 0.09 1.83 5.99 -3.37 -0.02 1.81 16 5 N -0.58 -10.49 2.59 -173.45 -0.45 -10.94 16 6 C 0.56 9.98 7.31 -12.47 -0.09 9.89 16 7 O -0.54 -11.04 15.28 -13.02 -0.20 -11.24 16 8 C -0.14 -2.02 5.53 -104.85 -0.58 -2.60 16 9 C -0.08 -0.91 7.43 -39.19 -0.29 -1.20 16 10 C -0.13 -1.11 10.02 -39.64 -0.40 -1.51 16 11 C -0.08 -0.73 9.81 -39.50 -0.39 -1.12 16 12 C -0.08 -0.87 6.33 -39.40 -0.25 -1.12 16 13 Cl -0.06 -0.62 28.50 -51.86 -1.48 -2.10 16 14 C 0.17 2.40 6.68 -38.67 -0.26 2.15 16 15 O -0.47 -6.90 11.55 -37.02 -0.43 -7.33 16 16 C 0.06 0.98 4.45 -3.60 -0.02 0.96 16 17 C 0.15 2.97 3.23 -67.49 -0.22 2.76 16 18 H 0.03 0.66 7.38 -51.93 -0.38 0.27 16 19 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 20 N -0.58 -13.35 2.65 -156.76 -0.42 -13.77 16 21 C -0.26 -6.48 8.29 -15.06 -0.12 -6.60 16 22 H 0.06 1.57 6.52 -52.49 -0.34 1.23 16 23 C 0.02 0.41 5.21 -17.43 -0.09 0.32 16 24 N -0.90 -24.23 9.78 55.49 0.54 -23.69 16 25 Si 0.90 20.58 29.55 -169.99 -5.02 15.56 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.08 1.97 6.94 -51.93 -0.36 1.61 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.47 7.00 -51.93 -0.36 0.11 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.64 6.98 -51.93 -0.36 1.28 16 34 H 0.16 1.57 5.40 -52.48 -0.28 1.28 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.40 4.46 9.06 45.56 0.41 4.88 16 38 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.10 1.27 3.48 -53.63 -0.19 1.08 16 40 H 0.07 1.27 7.71 -51.93 -0.40 0.87 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.93 7.36 -51.93 -0.38 0.54 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -30.11 351.92 -9.05 -39.15 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.65 Total: 6.13 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.25 Total: 2.92 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.32 Total: -48.40 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.63 Total: -18.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.11 -9.05 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.406 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds