Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09003 * 109.74338 * 2 1 4 4 C 1.53817 * 109.75774 * 239.37765 * 2 1 3 5 5 N 1.46962 * 108.57789 * 289.94841 * 4 2 1 6 6 C 1.34777 * 120.59445 * 124.67413 * 5 4 2 7 7 O 1.21586 * 120.00022 * 2.00157 * 6 5 4 8 8 C 1.47534 * 119.99979 * 182.00915 * 6 5 4 9 9 C 1.39727 * 120.18533 * 326.25912 * 8 6 5 10 10 C 1.37780 * 119.93289 * 179.72011 * 9 8 6 11 11 C 1.38547 * 120.30518 * 0.53797 * 10 9 8 12 12 C 1.38148 * 120.37886 * 359.75895 * 11 10 9 13 13 Cl 1.73599 * 119.96875 * 179.97438 * 12 11 10 14 14 C 1.38818 * 120.06158 * 359.95940 * 12 11 10 15 15 O 1.35671 * 120.15435 * 179.97438 * 14 12 11 16 16 C 1.46964 * 118.81145 * 304.64760 * 5 4 2 17 17 C 1.53364 * 108.63663 * 55.22715 * 16 5 4 18 18 H 1.09001 * 109.61184 * 70.32405 * 17 16 5 19 19 C 1.53007 * 109.61136 * 190.83345 * 17 16 5 20 20 N 1.46961 * 108.63732 * 310.57594 * 17 16 5 21 21 C 1.36935 * 120.60017 * 235.20375 * 20 17 16 22 22 H 1.07999 * 119.99865 * 39.10688 * 21 20 17 23 23 C 1.38810 * 120.00363 * 219.11710 * 21 20 17 24 24 N 1.31620 * 120.00190 * 1.14461 * 23 21 20 25 25 Si 1.86799 * 120.00114 * 181.15101 * 23 21 20 26 26 H 1.48499 * 109.47045 * 179.97438 * 25 23 21 27 27 H 1.48505 * 109.46865 * 299.99518 * 25 23 21 28 28 H 1.48499 * 109.47187 * 59.99273 * 25 23 21 29 29 H 1.08994 * 109.46811 * 299.56987 * 1 2 3 30 30 H 1.09000 * 109.46672 * 59.57067 * 1 2 3 31 31 H 1.08994 * 109.46692 * 179.56880 * 1 2 3 32 32 H 1.09001 * 109.73631 * 170.15489 * 4 2 1 33 33 H 1.09000 * 109.67368 * 49.69619 * 4 2 1 34 34 H 1.08003 * 120.03853 * 0.02562 * 9 8 6 35 35 H 1.07991 * 119.85050 * 180.25423 * 10 9 8 36 36 H 1.08001 * 119.81308 * 179.74031 * 11 10 9 37 37 H 0.96695 * 114.00531 * 270.02321 * 15 14 12 38 38 H 1.09004 * 109.60831 * 295.48507 * 16 5 4 39 39 H 1.08996 * 109.75392 * 175.05879 * 16 5 4 40 40 H 1.08999 * 109.47019 * 179.14944 * 19 17 16 41 41 H 1.09004 * 109.46635 * 299.14708 * 19 17 16 42 42 H 1.08995 * 109.47285 * 59.14388 * 19 17 16 43 43 H 0.96992 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0501 -0.7374 -1.2457 5 7 1.7611 -2.1705 -1.0962 6 6 1.0611 -2.8312 -2.0396 7 8 0.6940 -2.2503 -3.0426 8 6 0.7403 -4.2594 -1.8552 9 6 1.6361 -5.1005 -1.1899 10 6 1.3286 -6.4322 -1.0155 11 6 0.1390 -6.9451 -1.5067 12 6 -0.7531 -6.1264 -2.1718 13 17 -2.2403 -6.7805 -2.7835 14 6 -0.4616 -4.7811 -2.3511 15 8 -1.3362 -3.9755 -3.0044 16 6 2.2495 -2.8705 0.1002 17 6 1.7344 -2.1344 1.3432 18 1 0.6586 -2.2829 1.4367 19 6 2.4408 -2.6734 2.5888 20 7 2.0233 -0.7012 1.1937 21 6 2.7345 -0.0299 2.1521 22 1 3.5741 -0.5075 2.6352 23 6 2.3763 1.2645 2.5030 24 7 1.3392 1.8384 1.9308 25 14 3.3661 2.1919 3.7873 26 1 2.7832 3.5441 3.9801 27 1 3.3292 1.4486 5.0725 28 1 4.7731 2.3205 3.3301 29 1 -0.3633 0.5071 0.8938 30 1 -0.3633 0.5205 -0.8861 31 1 -0.3632 -1.0276 -0.0077 32 1 3.1259 -0.5888 -1.3391 33 1 1.5493 -0.3540 -2.1348 34 1 2.5663 -4.7062 -0.8085 35 1 2.0200 -7.0801 -0.4976 36 1 -0.0921 -7.9911 -1.3692 37 1 -1.1916 -3.9305 -3.9594 38 1 3.3395 -2.8738 0.1026 39 1 1.8806 -3.8961 0.1033 40 1 2.0841 -2.1384 3.4689 41 1 2.2250 -3.7363 2.6974 42 1 3.5164 -2.5296 2.4873 43 1 1.0891 2.7429 2.1757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -21.750913 kcal Electronic energy + Delta-G solvation = -28419.799217 eV Core-core repulsion = 24492.248222 eV Total energy + Delta-G solvation = -3927.550995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89532 -40.18166 -38.75416 -37.86395 -37.46925 -35.69862 -34.36611 -33.42033 -31.92165 -30.89648 -29.73951 -27.82767 -27.33206 -25.75498 -24.40864 -23.80692 -22.49471 -21.43608 -20.49395 -19.29432 -18.69312 -17.88949 -17.48804 -17.06883 -16.78630 -16.62382 -16.24852 -16.14429 -15.76793 -15.38153 -15.20360 -14.85518 -14.65540 -14.29771 -13.97184 -13.65639 -13.51480 -13.44998 -13.18908 -12.89966 -12.83608 -12.76996 -12.59147 -12.34228 -12.28878 -12.21976 -12.05497 -11.95134 -11.83231 -11.70258 -11.57745 -11.39618 -10.76550 -10.42821 -10.00357 -9.72341 -9.62688 -8.35774 -7.77981 -5.38220 -0.30503 -0.01659 1.01785 1.51494 1.52074 1.57926 1.69330 2.01347 2.49476 2.56865 3.04855 3.35452 3.38290 3.55975 3.85814 3.98992 4.11988 4.21117 4.22510 4.31408 4.44480 4.50129 4.55804 4.62209 4.70092 4.72412 4.79220 4.88811 4.96244 4.97920 5.07376 5.10723 5.18004 5.20976 5.32936 5.44610 5.58362 5.60763 5.72853 5.76801 5.84126 6.47531 6.53860 6.60120 7.11098 7.25133 7.88963 8.48078 9.25064 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.003348 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.675750 B = 8360.876186 C = 8899.689299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.185 3.815 3 H 0.072 0.928 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.553 3.447 7 O -0.578 6.578 8 C -0.166 4.166 9 C -0.082 4.082 10 C -0.106 4.106 11 C -0.066 4.066 12 C -0.083 4.083 13 Cl -0.055 7.055 14 C 0.150 3.850 15 O -0.494 6.494 16 C 0.069 3.931 17 C 0.146 3.854 18 H 0.006 0.994 19 C -0.124 4.124 20 N -0.594 5.594 21 C -0.255 4.255 22 H 0.074 0.926 23 C -0.038 4.038 24 N -0.925 5.925 25 Si 0.960 3.040 26 H -0.303 1.303 27 H -0.277 1.277 28 H -0.278 1.278 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.407 0.593 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -21.296 -6.050 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.090 0.910 4 C -0.020 4.020 5 N -0.317 5.317 6 C 0.343 3.657 7 O -0.460 6.460 8 C -0.170 4.170 9 C -0.100 4.100 10 C -0.124 4.124 11 C -0.085 4.085 12 C -0.110 4.110 13 Cl -0.026 7.026 14 C 0.103 3.897 15 O -0.307 6.307 16 C -0.053 4.053 17 C 0.040 3.960 18 H 0.024 0.976 19 C -0.182 4.182 20 N -0.318 5.318 21 C -0.385 4.385 22 H 0.092 0.908 23 C -0.235 4.235 24 N -0.569 5.569 25 Si 0.789 3.211 26 H -0.229 1.229 27 H -0.203 1.203 28 H -0.203 1.203 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.190 0.810 37 H 0.267 0.733 38 H 0.104 0.896 39 H 0.148 0.852 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.979 -20.765 -6.031 21.645 hybrid contribution -0.168 1.531 0.014 1.540 sum 0.811 -19.234 -6.017 20.170 Atomic orbital electron populations 1.21763 0.98764 0.97591 0.99634 1.20596 0.91624 0.95688 0.84312 0.90964 1.22269 0.99955 0.80232 0.99501 1.47888 1.52970 1.10035 1.20820 1.18449 0.77483 0.86996 0.82782 1.90689 1.55000 1.69960 1.30324 1.20257 0.96644 0.93662 1.06407 1.22062 0.99735 0.94025 0.94174 1.21566 0.96980 0.94394 0.99427 1.21615 0.92143 1.01183 0.93550 1.21424 0.91836 0.92178 1.05585 1.98373 1.32664 1.85183 1.86418 1.18324 0.87995 0.87772 0.95591 1.84686 1.53018 1.66960 1.26044 1.23429 1.00065 0.97997 0.83823 1.21029 0.95621 0.84939 0.94411 0.97636 1.21661 1.00407 1.00179 0.95970 1.44255 1.62902 1.04716 1.19921 1.19306 1.07709 0.97041 1.14479 0.90842 1.26057 0.97265 1.00337 0.99803 1.70074 1.28252 1.13768 1.44824 0.85475 0.78296 0.77177 0.80153 1.22949 1.20320 1.20347 0.93460 0.95272 0.96451 0.91496 0.91153 0.81196 0.79630 0.81041 0.73287 0.89562 0.85216 0.94141 0.89935 0.92128 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.93 71.99 0.64 -5.12 16 2 C 0.19 8.74 2.34 45.18 0.11 8.85 16 3 H 0.07 3.90 6.30 -2.39 -0.02 3.89 16 4 C 0.10 4.24 5.99 86.57 0.52 4.76 16 5 N -0.59 -20.80 2.59 -820.92 -2.13 -22.93 16 6 C 0.55 19.68 7.31 86.69 0.63 20.31 16 7 O -0.58 -24.13 15.28 13.52 0.21 -23.93 16 8 C -0.17 -4.54 5.53 -20.01 -0.11 -4.65 16 9 C -0.08 -1.49 7.43 22.52 0.17 -1.32 16 10 C -0.11 -1.24 10.02 22.23 0.22 -1.01 16 11 C -0.07 -0.91 9.81 22.32 0.22 -0.69 16 12 C -0.08 -1.72 6.33 22.39 0.14 -1.58 16 13 Cl -0.06 -1.11 28.50 -2.72 -0.08 -1.18 16 14 C 0.15 4.04 6.68 22.86 0.15 4.19 16 15 O -0.49 -14.75 11.55 -72.37 -0.84 -15.58 16 16 C 0.07 2.04 4.45 86.41 0.38 2.42 16 17 C 0.15 5.48 3.23 45.03 0.15 5.62 16 18 H 0.01 0.25 7.38 -2.39 -0.02 0.23 16 19 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 20 N -0.59 -27.54 2.65 -649.86 -1.72 -29.26 16 21 C -0.26 -12.78 8.29 84.03 0.70 -12.08 16 22 H 0.07 3.50 6.52 -2.91 -0.02 3.48 16 23 C -0.04 -2.01 5.21 84.86 0.44 -1.57 16 24 N -0.92 -52.17 9.78 21.65 0.21 -51.96 16 25 Si 0.96 42.95 29.55 68.60 2.03 44.98 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 29 H 0.05 2.55 6.94 -2.39 -0.02 2.54 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.02 0.81 7.00 -2.39 -0.02 0.79 16 32 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.98 6.98 -2.39 -0.02 2.96 16 34 H 0.17 2.56 5.40 -2.91 -0.02 2.55 16 35 H 0.19 0.60 8.06 -2.92 -0.02 0.58 16 36 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.41 9.62 9.06 -74.06 -0.67 8.95 16 38 H 0.09 2.29 8.12 -2.38 -0.02 2.27 16 39 H 0.13 2.93 3.48 -3.98 -0.01 2.92 16 40 H 0.04 1.46 7.71 -2.39 -0.02 1.45 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.06 1.82 7.36 -2.39 -0.02 1.81 16 43 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -69.58 351.92 3.01 -66.58 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.39 Total: 18.45 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 4.94 Total: 14.84 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.64 Total: -104.15 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.63 Total: -39.51 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.18 kcal Total: -69.58 3.01 -66.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.825 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds