Wall clock time and date at job start Tue Mar 31 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.75057 * 2 1 4 4 C 1.53811 * 109.76081 * 239.37110 * 2 1 3 5 5 N 1.46969 * 108.58128 * 289.95163 * 4 2 1 6 6 C 1.34771 * 120.59711 * 124.61905 * 5 4 2 7 7 O 1.21592 * 120.00493 * 180.02562 * 6 5 4 8 8 C 1.47471 * 119.99809 * 0.02581 * 6 5 4 9 9 C 1.40202 * 120.20166 * 89.72189 * 8 6 5 10 10 O 1.35656 * 120.14154 * 0.02562 * 9 8 6 11 11 C 1.38623 * 119.71391 * 179.79129 * 9 8 6 12 12 C 1.38148 * 120.11841 * 0.46112 * 11 9 8 13 13 C 1.38433 * 120.41502 * 359.79341 * 12 11 9 14 14 C 1.38013 * 120.28261 * 359.97096 * 13 12 11 15 15 Cl 1.73600 * 120.06099 * 179.97438 * 14 13 12 16 16 C 1.46968 * 118.80879 * 304.64654 * 5 4 2 17 17 C 1.53364 * 108.63556 * 55.22287 * 16 5 4 18 18 H 1.09001 * 109.75184 * 70.40581 * 17 16 5 19 19 C 1.53001 * 109.60965 * 190.82907 * 17 16 5 20 20 N 1.46963 * 109.60953 * 120.42833 * 2 1 3 21 21 C 1.36935 * 120.59414 * 244.53909 * 20 2 1 22 22 H 1.08006 * 120.00474 * 208.61620 * 21 20 2 23 23 C 1.38811 * 119.99893 * 28.34655 * 21 20 2 24 24 N 1.31622 * 120.00110 * 17.56634 * 23 21 20 25 25 Si 1.86806 * 120.00107 * 197.57581 * 23 21 20 26 26 H 1.48498 * 109.47263 * 89.99585 * 25 23 21 27 27 H 1.48503 * 109.47039 * 209.99841 * 25 23 21 28 28 H 1.48498 * 109.47099 * 329.99508 * 25 23 21 29 29 H 1.09000 * 109.46638 * 299.57389 * 1 2 3 30 30 H 1.08999 * 109.46826 * 59.57483 * 1 2 3 31 31 H 1.08999 * 109.47104 * 179.57670 * 1 2 3 32 32 H 1.08994 * 109.74533 * 170.15924 * 4 2 1 33 33 H 1.09005 * 109.67239 * 49.69434 * 4 2 1 34 34 H 0.96698 * 114.00208 * 90.00518 * 10 9 8 35 35 H 1.08001 * 119.94464 * 180.22579 * 11 9 8 36 36 H 1.08004 * 119.79264 * 179.76559 * 12 11 9 37 37 H 1.07999 * 119.86006 * 179.97438 * 13 12 11 38 38 H 1.09006 * 109.60842 * 295.47887 * 16 5 4 39 39 H 1.08996 * 109.74776 * 175.05379 * 16 5 4 40 40 H 1.08999 * 109.47602 * 179.14472 * 19 17 16 41 41 H 1.09004 * 109.47481 * 299.15251 * 19 17 16 42 42 H 1.09003 * 109.46841 * 59.14683 * 19 17 16 43 43 H 0.97001 * 120.00119 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7375 -1.2456 5 7 1.7610 -2.1707 -1.0960 6 6 1.0602 -2.8312 -2.0388 7 8 0.8268 -4.0169 -1.9039 8 6 0.5764 -2.1160 -3.2343 9 6 1.3781 -2.0375 -4.3818 10 8 2.6031 -2.6201 -4.3981 11 6 0.9114 -1.3664 -5.5014 12 6 -0.3342 -0.7693 -5.4826 13 6 -1.1278 -0.8390 -4.3505 14 6 -0.6820 -1.5071 -3.2281 15 17 -1.6817 -1.5904 -1.8113 16 6 2.2494 -2.8705 0.1005 17 6 1.7343 -2.1343 1.3434 18 1 0.6587 -2.2824 1.4399 19 6 2.4405 -2.6733 2.5890 20 7 2.0232 -0.7011 1.1937 21 6 2.7345 -0.0298 2.1522 22 1 3.4640 -0.5554 2.7506 23 6 2.5219 1.3274 2.3508 24 7 1.4293 1.8971 1.8881 25 14 3.7866 2.3455 3.2747 26 1 4.7775 2.8943 2.3144 27 1 3.1055 3.4632 3.9763 28 1 4.4822 1.4884 4.2680 29 1 -0.3632 0.5072 0.8938 30 1 -0.3633 0.5204 -0.8862 31 1 -0.3633 -1.0276 -0.0076 32 1 3.1258 -0.5891 -1.3390 33 1 1.5493 -0.3542 -2.1347 34 1 2.5986 -3.5369 -4.7053 35 1 1.5244 -1.3068 -6.3886 36 1 -0.6910 -0.2445 -6.3566 37 1 -2.1000 -0.3687 -4.3455 38 1 3.3394 -2.8740 0.1029 39 1 1.8804 -3.8961 0.1036 40 1 2.0840 -2.1381 3.4691 41 1 2.2248 -3.7362 2.6978 42 1 3.5163 -2.5295 2.4875 43 1 1.2806 2.8455 2.0273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:15 Heat of formation + Delta-G solvation = -17.638065 kcal Electronic energy + Delta-G solvation = -28991.389199 eV Core-core repulsion = 25064.016550 eV Total energy + Delta-G solvation = -3927.372648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56318 -38.92322 -37.20540 -37.17750 -36.12857 -34.01374 -32.81268 -31.26780 -31.00720 -30.00623 -27.91057 -26.42900 -25.62090 -24.04478 -23.02011 -22.80184 -20.96977 -20.04374 -18.79419 -18.40061 -17.36464 -16.44345 -16.08483 -15.99817 -15.61938 -15.06639 -14.86694 -14.52005 -14.32454 -13.95547 -13.63293 -13.48935 -13.28210 -13.08715 -12.74002 -12.52571 -12.25816 -11.98310 -11.74676 -11.47019 -11.33740 -11.16362 -11.07863 -10.98772 -10.77947 -10.75154 -10.58593 -10.41966 -10.09645 -10.03435 -9.79403 -9.59941 -9.36301 -8.92668 -8.78631 -8.45139 -8.15393 -6.62748 -5.79699 -3.23351 0.80330 0.89751 2.06910 2.84344 3.16369 3.36536 3.44000 3.44587 3.48868 3.96812 4.46237 4.54889 4.70379 4.90164 5.03704 5.21710 5.30321 5.36745 5.41169 5.74391 5.80331 5.84647 5.93048 5.97783 6.05338 6.10127 6.17856 6.24424 6.27027 6.34062 6.40086 6.49454 6.67342 6.83925 6.91464 6.96674 7.05734 7.13895 7.40667 7.56343 7.69839 7.80591 7.92005 8.42582 8.47366 9.19284 9.81367 10.38745 11.27114 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.004498 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.256212 B = 6222.847271 C = 6534.763848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.180 3.820 3 H 0.106 0.894 4 C 0.090 3.910 5 N -0.574 5.574 6 C 0.565 3.435 7 O -0.551 6.551 8 C -0.130 4.130 9 C 0.148 3.852 10 O -0.487 6.487 11 C -0.145 4.145 12 C -0.082 4.082 13 C -0.122 4.122 14 C 0.007 3.993 15 Cl -0.035 7.035 16 C 0.101 3.899 17 C 0.155 3.845 18 H 0.031 0.969 19 C -0.134 4.134 20 N -0.580 5.580 21 C -0.251 4.251 22 H 0.072 0.928 23 C 0.004 3.996 24 N -0.897 5.897 25 Si 0.899 3.101 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.055 0.945 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 -5.742 -14.575 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.124 0.876 4 C -0.034 4.034 5 N -0.303 5.303 6 C 0.351 3.649 7 O -0.431 6.431 8 C -0.135 4.135 9 C 0.102 3.898 10 O -0.297 6.297 11 C -0.164 4.164 12 C -0.100 4.100 13 C -0.141 4.141 14 C -0.020 4.020 15 Cl -0.006 7.006 16 C -0.023 4.023 17 C 0.048 3.952 18 H 0.049 0.951 19 C -0.192 4.192 20 N -0.303 5.303 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.194 4.194 24 N -0.541 5.541 25 Si 0.730 3.270 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.116 -5.651 -14.079 15.487 hybrid contribution 0.383 0.359 0.342 0.627 sum -2.733 -5.292 -13.737 14.972 Atomic orbital electron populations 1.22239 0.97774 0.99323 1.00927 1.20820 0.92598 0.96753 0.82537 0.87619 1.22725 1.00447 0.79330 1.00928 1.47887 1.51685 1.10879 1.19848 1.17795 0.78435 0.86382 0.82279 1.90749 1.58836 1.15015 1.78463 1.20249 0.94150 1.02269 0.96824 1.18253 0.84209 0.96049 0.91307 1.84766 1.24428 1.31507 1.89040 1.21434 0.96626 1.00334 0.98003 1.21067 0.93298 0.97821 0.97846 1.21048 1.01410 0.99988 0.91659 1.20853 0.91875 0.99031 0.90270 1.98438 1.68187 1.96796 1.37173 1.22317 0.98604 0.96440 0.84951 1.20775 0.96553 0.86301 0.91585 0.95089 1.21754 1.00747 0.98308 0.98430 1.44169 1.63045 1.03098 1.19967 1.19191 1.13581 0.91601 1.13623 0.91065 1.25035 0.96440 0.98473 0.99490 1.70009 1.23586 1.11002 1.49501 0.86340 0.81177 0.80089 0.79431 1.21578 1.21919 1.20544 0.90883 0.95466 0.94656 0.91829 0.91639 0.74665 0.84343 0.84332 0.84146 0.91726 0.90106 0.91584 0.94048 0.92573 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 7.69 37.16 0.29 -2.84 16 2 C 0.18 4.05 2.36 -67.25 -0.16 3.89 16 3 H 0.11 2.68 6.00 -51.93 -0.31 2.37 16 4 C 0.09 1.75 5.90 -3.36 -0.02 1.73 16 5 N -0.57 -11.01 2.59 -173.47 -0.45 -11.46 16 6 C 0.56 10.57 5.72 -12.50 -0.07 10.50 16 7 O -0.55 -11.54 16.52 5.28 0.09 -11.45 16 8 C -0.13 -2.07 3.62 -104.82 -0.38 -2.45 16 9 C 0.15 1.95 6.72 -38.70 -0.26 1.69 16 10 O -0.49 -6.10 12.95 -18.67 -0.24 -6.35 16 11 C -0.15 -1.48 9.97 -39.47 -0.39 -1.87 16 12 C -0.08 -0.76 10.03 -39.54 -0.40 -1.15 16 13 C -0.12 -1.37 9.81 -39.59 -0.39 -1.76 16 14 C 0.01 0.11 6.23 -39.08 -0.24 -0.14 16 15 Cl -0.04 -0.57 23.87 -51.86 -1.24 -1.81 16 16 C 0.10 1.93 5.90 -3.60 -0.02 1.91 16 17 C 0.16 3.24 3.22 -67.49 -0.22 3.02 16 18 H 0.03 0.71 7.39 -51.93 -0.38 0.32 16 19 C -0.13 -2.51 7.94 37.16 0.29 -2.21 16 20 N -0.58 -13.66 2.68 -156.77 -0.42 -14.08 16 21 C -0.25 -6.41 8.58 -15.06 -0.13 -6.54 16 22 H 0.07 1.80 6.22 -52.48 -0.33 1.47 16 23 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 24 N -0.90 -24.36 10.17 55.49 0.56 -23.79 16 25 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 1.82 7.21 -51.93 -0.37 1.45 16 30 H 0.03 0.54 7.53 -51.93 -0.39 0.14 16 31 H 0.03 0.74 4.80 -51.93 -0.25 0.50 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.20 6.21 -51.93 -0.32 0.88 16 34 H 0.40 3.30 9.06 45.56 0.41 3.71 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 39 H 0.08 1.53 7.00 -51.93 -0.36 1.17 16 40 H 0.07 1.32 7.67 -51.93 -0.40 0.92 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.04 7.38 -51.93 -0.38 0.65 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -30.77 351.64 -8.37 -39.15 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.76 Total: 4.72 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.18 Total: 3.83 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.31 Total: -49.33 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.15 Total: -17.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.24 Total: -1.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.77 -8.37 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.508 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds