Wall clock time and date at job start Tue Mar 31 2020 20:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.75057 * 2 1 4 4 C 1.53811 * 109.76081 * 239.37110 * 2 1 3 5 5 N 1.46969 * 108.58128 * 289.95163 * 4 2 1 6 6 C 1.34771 * 120.59711 * 124.61905 * 5 4 2 7 7 O 1.21592 * 120.00493 * 180.02562 * 6 5 4 8 8 C 1.47471 * 119.99809 * 0.02581 * 6 5 4 9 9 C 1.40202 * 120.20166 * 89.72189 * 8 6 5 10 10 O 1.35656 * 120.14154 * 0.02562 * 9 8 6 11 11 C 1.38623 * 119.71391 * 179.79129 * 9 8 6 12 12 C 1.38148 * 120.11841 * 0.46112 * 11 9 8 13 13 C 1.38433 * 120.41502 * 359.79341 * 12 11 9 14 14 C 1.38013 * 120.28261 * 359.97096 * 13 12 11 15 15 Cl 1.73600 * 120.06099 * 179.97438 * 14 13 12 16 16 C 1.46968 * 118.80879 * 304.64654 * 5 4 2 17 17 C 1.53364 * 108.63556 * 55.22287 * 16 5 4 18 18 H 1.09001 * 109.75184 * 70.40581 * 17 16 5 19 19 C 1.53001 * 109.60965 * 190.82907 * 17 16 5 20 20 N 1.46963 * 109.60953 * 120.42833 * 2 1 3 21 21 C 1.36935 * 120.59414 * 244.53909 * 20 2 1 22 22 H 1.08006 * 120.00474 * 208.61620 * 21 20 2 23 23 C 1.38811 * 119.99893 * 28.34655 * 21 20 2 24 24 N 1.31622 * 120.00110 * 17.56634 * 23 21 20 25 25 Si 1.86806 * 120.00107 * 197.57581 * 23 21 20 26 26 H 1.48498 * 109.47263 * 89.99585 * 25 23 21 27 27 H 1.48503 * 109.47039 * 209.99841 * 25 23 21 28 28 H 1.48498 * 109.47099 * 329.99508 * 25 23 21 29 29 H 1.09000 * 109.46638 * 299.57389 * 1 2 3 30 30 H 1.08999 * 109.46826 * 59.57483 * 1 2 3 31 31 H 1.08999 * 109.47104 * 179.57670 * 1 2 3 32 32 H 1.08994 * 109.74533 * 170.15924 * 4 2 1 33 33 H 1.09005 * 109.67239 * 49.69434 * 4 2 1 34 34 H 0.96698 * 114.00208 * 90.00518 * 10 9 8 35 35 H 1.08001 * 119.94464 * 180.22579 * 11 9 8 36 36 H 1.08004 * 119.79264 * 179.76559 * 12 11 9 37 37 H 1.07999 * 119.86006 * 179.97438 * 13 12 11 38 38 H 1.09006 * 109.60842 * 295.47887 * 16 5 4 39 39 H 1.08996 * 109.74776 * 175.05379 * 16 5 4 40 40 H 1.08999 * 109.47602 * 179.14472 * 19 17 16 41 41 H 1.09004 * 109.47481 * 299.15251 * 19 17 16 42 42 H 1.09003 * 109.46841 * 59.14683 * 19 17 16 43 43 H 0.97001 * 120.00119 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7375 -1.2456 5 7 1.7610 -2.1707 -1.0960 6 6 1.0602 -2.8312 -2.0388 7 8 0.8268 -4.0169 -1.9039 8 6 0.5764 -2.1160 -3.2343 9 6 1.3781 -2.0375 -4.3818 10 8 2.6031 -2.6201 -4.3981 11 6 0.9114 -1.3664 -5.5014 12 6 -0.3342 -0.7693 -5.4826 13 6 -1.1278 -0.8390 -4.3505 14 6 -0.6820 -1.5071 -3.2281 15 17 -1.6817 -1.5904 -1.8113 16 6 2.2494 -2.8705 0.1005 17 6 1.7343 -2.1343 1.3434 18 1 0.6587 -2.2824 1.4399 19 6 2.4405 -2.6733 2.5890 20 7 2.0232 -0.7011 1.1937 21 6 2.7345 -0.0298 2.1522 22 1 3.4640 -0.5554 2.7506 23 6 2.5219 1.3274 2.3508 24 7 1.4293 1.8971 1.8881 25 14 3.7866 2.3455 3.2747 26 1 4.7775 2.8943 2.3144 27 1 3.1055 3.4632 3.9763 28 1 4.4822 1.4884 4.2680 29 1 -0.3632 0.5072 0.8938 30 1 -0.3633 0.5204 -0.8862 31 1 -0.3633 -1.0276 -0.0076 32 1 3.1258 -0.5891 -1.3390 33 1 1.5493 -0.3542 -2.1347 34 1 2.5986 -3.5369 -4.7053 35 1 1.5244 -1.3068 -6.3886 36 1 -0.6910 -0.2445 -6.3566 37 1 -2.1000 -0.3687 -4.3455 38 1 3.3394 -2.8740 0.1029 39 1 1.8804 -3.8961 0.1036 40 1 2.0840 -2.1381 3.4691 41 1 2.2248 -3.7362 2.6978 42 1 3.5163 -2.5295 2.4875 43 1 1.2806 2.8455 2.0273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:14 Heat of formation + Delta-G solvation = -37.219363 kcal Electronic energy + Delta-G solvation = -28992.238307 eV Core-core repulsion = 25064.016550 eV Total energy + Delta-G solvation = -3928.221757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78536 -40.20428 -38.80263 -38.19591 -37.15252 -35.70167 -34.51638 -32.98910 -32.20065 -30.91517 -29.73472 -27.95634 -27.22480 -25.73740 -24.30287 -23.71814 -22.68467 -21.46367 -20.35926 -19.48097 -18.74705 -17.67515 -17.50450 -17.42623 -16.83594 -16.80770 -15.97883 -15.86822 -15.77377 -15.47205 -15.28732 -15.03097 -14.63348 -14.49819 -14.00947 -13.83527 -13.64222 -13.51603 -13.08759 -12.89630 -12.85666 -12.81320 -12.54835 -12.47954 -12.34474 -12.21558 -12.09424 -11.92267 -11.82820 -11.78695 -11.55792 -11.17219 -10.97767 -10.42388 -9.93930 -9.79090 -9.70966 -8.53074 -7.78173 -5.24009 -0.14597 0.01515 1.00214 1.42358 1.50400 1.52659 1.59151 1.97163 2.40095 2.55662 3.09077 3.31174 3.35462 3.50699 3.92048 4.00788 4.10781 4.17162 4.24637 4.27816 4.39083 4.48083 4.54786 4.57267 4.61850 4.68806 4.81795 4.84694 4.98192 5.02326 5.08999 5.14385 5.20912 5.23504 5.32980 5.35508 5.51437 5.58843 5.72026 5.77587 5.88107 6.38189 6.46614 6.62740 7.00768 7.22290 7.89801 8.44132 9.26167 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.004498 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.256212 B = 6222.847271 C = 6534.763848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.180 3.820 3 H 0.076 0.924 4 C 0.108 3.892 5 N -0.580 5.580 6 C 0.569 3.431 7 O -0.579 6.579 8 C -0.166 4.166 9 C 0.141 3.859 10 O -0.499 6.499 11 C -0.134 4.134 12 C -0.061 4.061 13 C -0.122 4.122 14 C -0.012 4.012 15 Cl -0.064 7.064 16 C 0.108 3.892 17 C 0.153 3.847 18 H 0.009 0.991 19 C -0.125 4.125 20 N -0.592 5.592 21 C -0.253 4.253 22 H 0.074 0.926 23 C -0.043 4.043 24 N -0.921 5.921 25 Si 0.957 3.043 26 H -0.289 1.289 27 H -0.301 1.301 28 H -0.273 1.273 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -5.749 -17.233 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.094 0.906 4 C -0.016 4.016 5 N -0.309 5.309 6 C 0.357 3.643 7 O -0.461 6.461 8 C -0.171 4.171 9 C 0.095 3.905 10 O -0.313 6.313 11 C -0.152 4.152 12 C -0.079 4.079 13 C -0.140 4.140 14 C -0.039 4.039 15 Cl -0.035 7.035 16 C -0.016 4.016 17 C 0.046 3.954 18 H 0.027 0.973 19 C -0.183 4.183 20 N -0.315 5.315 21 C -0.383 4.383 22 H 0.092 0.908 23 C -0.239 4.239 24 N -0.567 5.567 25 Si 0.787 3.213 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.198 1.198 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.272 0.728 35 H 0.189 0.811 36 H 0.202 0.798 37 H 0.180 0.820 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.543 -5.689 -16.750 17.872 hybrid contribution 0.184 0.310 1.057 1.117 sum -2.360 -5.378 -15.694 16.756 Atomic orbital electron populations 1.21987 0.97421 0.98992 0.99582 1.20723 0.92715 0.95639 0.83679 0.90594 1.22404 1.00120 0.79352 0.99754 1.47923 1.52162 1.10623 1.20151 1.18248 0.77183 0.86100 0.82761 1.90714 1.59633 1.16444 1.79304 1.20173 0.95598 1.04714 0.96589 1.18486 0.84074 0.96534 0.91371 1.84719 1.24370 1.32867 1.89325 1.21824 0.97148 0.98491 0.97787 1.21611 0.92175 0.95937 0.98179 1.21410 1.02610 0.98980 0.91000 1.21060 0.91492 1.00834 0.90521 1.98421 1.68811 1.97048 1.39198 1.22167 0.98878 0.96217 0.84340 1.20865 0.95621 0.85249 0.93633 0.97345 1.21663 1.00419 0.99820 0.96409 1.44372 1.63017 1.04101 1.20050 1.19448 1.13405 0.91865 1.13564 0.90805 1.25656 0.97870 0.99474 1.00870 1.70164 1.24917 1.10617 1.50953 0.85423 0.79099 0.78435 0.78346 1.21576 1.22803 1.19795 0.94611 0.94128 0.94427 0.92107 0.90204 0.72835 0.81057 0.79824 0.82029 0.91031 0.89805 0.93370 0.91053 0.92295 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 7.69 71.98 0.55 -4.86 16 2 C 0.18 8.24 2.36 45.18 0.11 8.35 16 3 H 0.08 3.97 6.00 -2.39 -0.01 3.96 16 4 C 0.11 4.21 5.90 86.56 0.51 4.72 16 5 N -0.58 -22.20 2.59 -820.99 -2.13 -24.33 16 6 C 0.57 21.17 5.72 86.68 0.50 21.67 16 7 O -0.58 -24.40 16.52 -4.01 -0.07 -24.47 16 8 C -0.17 -5.07 3.62 -19.99 -0.07 -5.14 16 9 C 0.14 3.38 6.72 22.84 0.15 3.54 16 10 O -0.50 -11.51 12.95 -89.71 -1.16 -12.67 16 11 C -0.13 -2.13 9.97 22.34 0.22 -1.91 16 12 C -0.06 -0.82 10.03 22.29 0.22 -0.60 16 13 C -0.12 -2.33 9.81 22.26 0.22 -2.12 16 14 C -0.01 -0.33 6.23 22.59 0.14 -0.18 16 15 Cl -0.06 -2.07 23.87 -2.72 -0.06 -2.13 16 16 C 0.11 4.13 5.90 86.41 0.51 4.64 16 17 C 0.15 6.48 3.22 45.03 0.15 6.63 16 18 H 0.01 0.41 7.39 -2.39 -0.02 0.39 16 19 C -0.13 -4.63 7.94 71.98 0.57 -4.06 16 20 N -0.59 -28.43 2.68 -649.89 -1.74 -30.17 16 21 C -0.25 -13.10 8.58 84.03 0.72 -12.38 16 22 H 0.07 3.73 6.22 -2.91 -0.02 3.71 16 23 C -0.04 -2.27 4.90 84.86 0.42 -1.85 16 24 N -0.92 -51.50 10.17 21.65 0.22 -51.28 16 25 Si 0.96 43.69 29.59 68.60 2.03 45.72 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H 0.03 1.84 7.21 -2.39 -0.02 1.82 16 30 H 0.04 1.65 7.53 -2.39 -0.02 1.63 16 31 H 0.04 1.64 4.80 -2.39 -0.01 1.63 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.88 6.21 -2.38 -0.01 2.87 16 34 H 0.41 6.12 9.06 -74.06 -0.67 5.45 16 35 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.07 2.63 8.12 -2.38 -0.02 2.61 16 39 H 0.08 3.16 7.00 -2.39 -0.02 3.14 16 40 H 0.05 1.93 7.67 -2.39 -0.02 1.91 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 2.13 7.38 -2.39 -0.02 2.11 16 43 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -68.92 351.64 2.39 -66.53 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.39 Total: 16.37 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 4.92 Total: 16.43 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.65 Total: -105.79 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.23 Total: -37.14 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.06 Total: -2.13 kcal Total: -68.92 2.39 -66.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.313 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds