Wall clock time and date at job start Tue Mar 31 2020 20:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99735 * 2 1 4 4 O 1.20825 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99872 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.63676 * 61.68851 * 5 3 2 7 7 C 1.54327 * 110.71677 * 298.54650 * 5 3 2 8 8 N 1.47021 * 107.26833 * 219.44127 * 7 5 3 9 9 C 1.34778 * 125.64869 * 178.97895 * 8 7 5 10 10 O 1.21589 * 119.99800 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00001 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00235 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47096 * 34.99747 * 12 11 9 14 14 C 1.50701 * 109.47158 * 155.00080 * 12 11 9 15 15 H 1.07999 * 119.99928 * 116.85072 * 14 12 11 16 16 C 1.37878 * 119.99953 * 296.84131 * 14 12 11 17 17 N 1.31513 * 120.00053 * 173.86399 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 353.86879 * 16 14 12 19 19 H 1.48499 * 109.46921 * 85.12727 * 18 16 14 20 20 H 1.48497 * 109.46928 * 205.12107 * 18 16 14 21 21 H 1.48501 * 109.47166 * 325.12383 * 18 16 14 22 22 C 1.53000 * 109.46720 * 275.00148 * 12 11 9 23 23 F 1.39896 * 109.47322 * 65.07107 * 22 12 11 24 24 F 1.39907 * 109.47060 * 185.06909 * 22 12 11 25 25 F 1.39900 * 109.47341 * 305.06428 * 22 12 11 26 26 C 1.47429 * 108.70575 * 358.94319 * 8 7 5 27 27 C 1.54912 * 104.83081 * 24.12823 * 26 8 7 28 28 H 1.09005 * 111.00474 * 81.06295 * 27 26 8 29 29 C 1.52999 * 111.00537 * 204.91628 * 27 26 8 30 30 H 1.08995 * 109.47629 * 300.00088 * 1 2 3 31 31 H 1.09003 * 109.46712 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46948 * 60.00100 * 1 2 3 33 33 H 1.08993 * 109.88446 * 338.86119 * 7 5 3 34 34 H 1.08996 * 109.87978 * 99.87345 * 7 5 3 35 35 H 0.97005 * 119.99835 * 359.97438 * 11 9 8 36 36 H 0.96998 * 120.00138 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.36659 * 142.96157 * 26 8 7 38 38 H 1.08998 * 110.36982 * 265.18090 * 26 8 7 39 39 H 1.09003 * 109.47066 * 172.19618 * 29 27 26 40 40 H 1.08998 * 109.47183 * 292.19984 * 29 27 26 41 41 H 1.08997 * 109.46935 * 52.19477 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9756 0.8117 -0.8971 7 6 4.1471 0.6149 1.2689 8 7 5.2734 1.4468 1.7171 9 6 6.0338 1.2187 2.8063 10 8 6.9437 1.9766 3.0820 11 7 5.7856 0.1506 3.5898 12 6 6.6117 -0.0970 4.7741 13 1 6.9006 0.8543 5.2209 14 6 5.8258 -0.9041 5.7750 15 1 6.1585 -1.8937 6.0513 16 6 4.6820 -0.3791 6.3382 17 7 3.9306 -1.1255 7.1178 18 14 4.1995 1.3923 5.9935 19 1 3.4309 1.4581 4.7247 20 1 3.3605 1.9025 7.1075 21 1 5.4237 2.2246 5.8745 22 6 7.8670 -0.8714 4.3673 23 9 8.6544 -0.0758 3.5282 24 9 8.5982 -1.2084 5.5114 25 9 7.4961 -2.0383 3.6904 26 6 5.4340 2.5713 0.7773 27 6 4.0388 2.7473 0.1276 28 1 3.3740 3.3163 0.7776 29 6 4.1537 3.4070 -1.2481 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 3.3850 0.5725 2.0469 34 1 4.4959 -0.3913 1.0366 35 1 5.0594 -0.4538 3.3700 36 1 3.1257 -0.7563 7.5137 37 1 5.7195 3.4762 1.3138 38 1 6.1793 2.3291 0.0197 39 1 3.1811 3.3933 -1.7401 40 1 4.4867 4.4381 -1.1300 41 1 4.8753 2.8595 -1.8544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932890013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:48 Heat of formation + Delta-G solvation = -286.364188 kcal Electronic energy + Delta-G solvation = -31472.072243 eV Core-core repulsion = 26550.480850 eV Total energy + Delta-G solvation = -4921.591393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.86835 -48.37400 -48.34897 -42.04934 -41.09087 -39.03855 -37.51290 -36.67387 -34.60460 -33.91754 -31.66953 -30.83997 -28.51274 -27.23225 -26.93452 -25.34816 -23.28442 -22.60507 -21.20936 -21.09531 -20.19168 -19.32764 -19.16894 -18.76972 -18.53523 -18.35492 -17.89227 -17.52978 -17.06144 -16.70713 -16.29904 -15.60172 -15.33041 -15.24863 -15.00062 -14.90157 -14.82145 -14.70989 -14.62166 -14.55186 -14.49553 -14.37230 -14.23790 -13.76823 -13.55719 -13.53935 -13.29047 -13.07365 -12.90701 -12.54790 -12.23359 -12.14947 -12.13020 -11.91797 -11.84373 -11.77505 -11.62189 -11.40712 -11.02061 -10.32050 -9.64706 -8.57076 -6.72721 0.99013 1.16766 1.27332 1.37553 1.43333 1.67936 1.86608 2.11165 2.22154 2.65249 2.97141 3.15365 3.21145 3.30777 3.39650 3.63128 3.68109 3.93865 4.03484 4.17951 4.28255 4.31843 4.39024 4.45804 4.49539 4.64387 4.67132 4.71562 4.84856 4.91441 4.97368 5.14974 5.18510 5.28452 5.36291 5.39165 5.81254 5.99887 6.41354 6.59836 6.89326 6.97273 7.45805 8.55069 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.004548 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.684512 B = 6154.565530 C = 7118.297843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.526 6.526 5 C -0.081 4.081 6 H 0.162 0.838 7 C 0.106 3.894 8 N -0.641 5.641 9 C 0.708 3.292 10 O -0.616 6.616 11 N -0.727 5.727 12 C 0.227 3.773 13 H 0.075 0.925 14 C -0.536 4.536 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.895 5.895 18 Si 0.925 3.075 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.446 3.554 23 F -0.189 7.189 24 F -0.186 7.186 25 F -0.184 7.184 26 C 0.125 3.875 27 C -0.082 4.082 28 H 0.076 0.924 29 C -0.132 4.132 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.406 0.594 36 H 0.280 0.720 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 3.413 -18.517 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.415 6.415 5 C -0.100 4.100 6 H 0.180 0.820 7 C -0.017 4.017 8 N -0.379 5.379 9 C 0.411 3.589 10 O -0.497 6.497 11 N -0.384 5.384 12 C 0.121 3.879 13 H 0.093 0.907 14 C -0.574 4.574 15 H 0.088 0.912 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.751 3.249 19 H -0.187 1.187 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.390 3.610 23 F -0.171 7.171 24 F -0.167 7.167 25 F -0.166 7.166 26 C 0.003 3.997 27 C -0.101 4.101 28 H 0.095 0.905 29 C -0.190 4.190 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.243 0.757 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.861 4.182 -18.125 19.226 hybrid contribution -0.729 0.274 0.388 0.870 sum -5.589 4.455 -17.737 19.123 Atomic orbital electron populations 1.23567 0.74687 1.05787 1.02527 1.86523 1.25058 1.32535 1.83383 1.23563 0.91828 0.81417 0.71425 1.90667 1.67492 1.37192 1.46120 1.22246 0.86885 0.99293 1.01547 0.82026 1.21978 0.88488 0.96025 0.95194 1.47615 1.33862 1.30301 1.26158 1.15920 0.81615 0.82025 0.79369 1.90878 1.34499 1.50105 1.74197 1.46384 1.36824 1.27842 1.27346 1.19780 0.86245 0.96938 0.84918 0.90700 1.20742 1.10156 1.03535 1.22944 0.91158 1.25320 0.95015 1.00137 0.93207 1.69927 1.14595 1.37779 1.30735 0.86060 0.78927 0.81374 0.78529 1.18668 1.20809 1.19702 1.21296 0.86908 0.78548 0.74227 1.93155 1.77290 1.73878 1.72779 1.93104 1.79584 1.92922 1.51135 1.93086 1.91566 1.51050 1.80862 1.22394 0.97433 0.88723 0.91115 1.22322 0.94823 0.93085 0.99875 0.90533 1.21664 1.02914 1.01406 0.92977 0.92629 0.85166 0.91135 0.92505 0.87742 0.75697 0.91054 0.91287 0.88869 0.91961 0.91064 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.09 10.55 -51.36 -0.54 -7.63 16 3 C 0.47 10.29 7.12 71.24 0.51 10.80 16 4 O -0.53 -14.04 15.51 21.97 0.34 -13.69 16 5 C -0.08 -1.46 2.92 -10.35 -0.03 -1.49 16 6 H 0.16 1.80 8.04 -2.39 -0.02 1.78 16 7 C 0.11 2.53 5.72 86.73 0.50 3.02 16 8 N -0.64 -19.60 3.33 -829.75 -2.76 -22.36 16 9 C 0.71 28.41 7.88 179.05 1.41 29.82 16 10 O -0.62 -28.80 15.17 -3.99 -0.06 -28.86 16 11 N -0.73 -29.97 3.17 -461.41 -1.46 -31.43 16 12 C 0.23 10.54 1.41 44.25 0.06 10.61 16 13 H 0.08 3.77 6.29 -2.39 -0.02 3.75 16 14 C -0.54 -27.64 8.64 25.60 0.22 -27.42 16 15 H 0.07 3.97 7.92 -2.91 -0.02 3.95 16 16 C 0.07 3.64 5.46 84.65 0.46 4.10 16 17 N -0.90 -49.21 13.96 21.45 0.30 -48.91 16 18 Si 0.93 42.73 26.14 68.60 1.79 44.52 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.27 -13.21 6.56 99.48 0.65 -12.56 16 22 C 0.45 19.67 2.79 71.98 0.20 19.87 16 23 F -0.19 -8.28 15.83 44.97 0.71 -7.57 16 24 F -0.19 -8.29 16.84 44.97 0.76 -7.53 16 25 F -0.18 -7.74 16.97 44.97 0.76 -6.98 16 26 C 0.13 2.99 6.37 86.86 0.55 3.54 16 27 C -0.08 -1.58 2.69 -9.40 -0.03 -1.61 16 28 H 0.08 1.84 7.49 -2.38 -0.02 1.83 16 29 C -0.13 -1.76 9.31 71.98 0.67 -1.09 16 30 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 33 H 0.06 1.54 7.81 -2.39 -0.02 1.52 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.41 15.40 7.58 -92.70 -0.70 14.69 16 36 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 38 H 0.09 1.83 7.99 -2.39 -0.02 1.81 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 Total: -1.00 -67.69 355.47 5.89 -61.79 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.33 Total: 16.91 kcal Atomic # 6 Polarization: 46.03 SS G_CDS: 5.73 Total: 51.75 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.92 Total: -102.71 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.26 Total: -50.18 kcal Atomic # 9 Polarization: -24.31 SS G_CDS: 2.23 Total: -22.08 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.79 Total: 44.52 kcal Total: -67.69 5.89 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932890013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.572 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -292.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds