Wall clock time and date at job start Tue Mar 31 2020 20:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.64655 * 61.68339 * 5 3 2 7 7 C 1.54329 * 110.71790 * 298.54185 * 5 3 2 8 8 N 1.47026 * 107.27174 * 219.44712 * 7 5 3 9 9 C 1.34775 * 125.65037 * 178.97905 * 8 7 5 10 10 O 1.21577 * 120.00169 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99436 * 359.96717 * 9 8 7 12 12 C 1.46504 * 119.99815 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47160 * 325.00536 * 12 11 9 14 14 C 1.50702 * 109.47402 * 205.00316 * 12 11 9 15 15 H 1.08003 * 119.99717 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00006 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00118 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00162 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47306 * 89.99930 * 18 16 14 20 20 H 1.48497 * 109.47394 * 210.00246 * 18 16 14 21 21 H 1.48501 * 109.46956 * 330.00408 * 18 16 14 22 22 C 1.52997 * 109.47064 * 85.00225 * 12 11 9 23 23 F 1.39900 * 109.47122 * 60.00289 * 22 12 11 24 24 F 1.39899 * 109.47426 * 180.02562 * 22 12 11 25 25 F 1.39903 * 109.46997 * 300.00377 * 22 12 11 26 26 C 1.47422 * 108.70238 * 358.93944 * 8 7 5 27 27 C 1.54907 * 104.83424 * 24.12780 * 26 8 7 28 28 H 1.09002 * 111.00259 * 81.06615 * 27 26 8 29 29 C 1.53003 * 111.00684 * 204.91469 * 27 26 8 30 30 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 32 32 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 33 33 H 1.09000 * 109.87967 * 338.85881 * 7 5 3 34 34 H 1.08993 * 109.88430 * 100.02727 * 7 5 3 35 35 H 0.96997 * 120.00693 * 0.02562 * 11 9 8 36 36 H 0.96998 * 120.00116 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.36914 * 142.96963 * 26 8 7 38 38 H 1.09004 * 110.36913 * 265.18269 * 26 8 7 39 39 H 1.08996 * 109.46844 * 172.19540 * 29 27 26 40 40 H 1.09000 * 109.47098 * 292.19880 * 29 27 26 41 41 H 1.09002 * 109.46938 * 52.20157 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9751 0.8119 -0.8987 7 6 4.1482 0.6143 1.2671 8 7 5.2748 1.4461 1.7148 9 6 6.0360 1.2176 2.8033 10 8 6.9461 1.9754 3.0786 11 7 5.7882 0.1492 3.5866 12 6 6.6152 -0.0988 4.7702 13 1 7.6423 0.2036 4.5657 14 6 6.5817 -1.5672 5.1078 15 1 6.0026 -2.2476 4.5011 16 6 7.2911 -2.0420 6.1905 17 7 7.9967 -1.2135 6.9289 18 14 7.2501 -3.8621 6.6085 19 1 8.3516 -4.5585 5.8965 20 1 7.4187 -4.0375 8.0734 21 1 5.9472 -4.4374 6.1878 22 6 6.0714 0.7084 5.9506 23 9 4.7533 0.3203 6.2132 24 9 6.8615 0.4720 7.0807 25 9 6.1026 2.0715 5.6372 26 6 5.4346 2.5708 0.7753 27 6 4.0390 2.7471 0.1266 28 1 3.3748 3.3159 0.7773 29 6 4.1530 3.4072 -1.2490 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 3.3865 0.5717 2.0457 34 1 4.4992 -0.3908 1.0337 35 1 5.0624 -0.4555 3.3669 36 1 8.4961 -1.5476 7.6904 37 1 5.7206 3.4756 1.3117 38 1 6.1794 2.3289 0.0170 39 1 3.1801 3.3936 -1.7402 40 1 4.4860 4.4384 -1.1307 41 1 4.8741 2.8599 -1.8561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932890015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:50 Heat of formation + Delta-G solvation = -266.600946 kcal Electronic energy + Delta-G solvation = -31196.677365 eV Core-core repulsion = 26275.942971 eV Total energy + Delta-G solvation = -4920.734394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.41240 -48.04957 -47.72179 -41.99741 -41.00186 -38.94856 -37.46244 -36.48061 -34.63314 -33.77457 -31.62495 -30.27636 -28.46814 -27.21269 -26.53400 -25.30771 -23.44857 -22.55175 -21.20942 -21.04625 -19.75833 -18.89075 -18.86441 -18.67157 -18.51926 -18.01532 -17.51907 -17.42972 -17.02972 -16.60742 -16.21019 -15.59376 -15.22815 -14.99426 -14.88314 -14.60321 -14.52827 -14.45870 -14.36367 -14.27834 -14.18647 -14.01602 -13.85889 -13.61771 -13.53077 -13.24586 -13.02527 -12.86665 -12.74228 -12.58845 -12.24616 -12.15406 -12.11830 -11.80463 -11.74156 -11.58315 -11.56521 -11.28302 -10.66603 -10.20651 -9.57607 -8.19412 -6.50454 1.03866 1.44944 1.49998 1.51159 1.61858 1.72938 2.08124 2.38219 2.55006 2.90507 2.96341 3.22440 3.36254 3.72212 3.79117 3.87898 3.98278 4.08023 4.17480 4.22138 4.32235 4.35617 4.43839 4.53943 4.64061 4.71958 4.75539 4.85443 4.89258 4.99934 5.19657 5.21664 5.32015 5.40167 5.41569 5.56331 5.66277 6.04029 6.54574 6.64443 6.99170 7.19837 7.56918 8.73577 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003558 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.319198 B = 7867.293130 C = 8701.438978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.476 3.524 4 O -0.527 6.527 5 C -0.081 4.081 6 H 0.160 0.840 7 C 0.109 3.891 8 N -0.638 5.638 9 C 0.714 3.286 10 O -0.623 6.623 11 N -0.717 5.717 12 C 0.270 3.730 13 H 0.049 0.951 14 C -0.559 4.559 15 H 0.093 0.907 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.985 3.015 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.258 1.258 22 C 0.411 3.589 23 F -0.204 7.204 24 F -0.150 7.150 25 F -0.220 7.220 26 C 0.126 3.874 27 C -0.080 4.080 28 H 0.078 0.922 29 C -0.134 4.134 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.408 0.592 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 0.204 -17.110 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.416 6.416 5 C -0.100 4.100 6 H 0.178 0.822 7 C -0.014 4.014 8 N -0.377 5.377 9 C 0.416 3.584 10 O -0.504 6.504 11 N -0.371 5.371 12 C 0.162 3.838 13 H 0.066 0.934 14 C -0.596 4.596 15 H 0.111 0.889 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.808 3.192 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.181 1.181 22 C 0.355 3.645 23 F -0.186 7.186 24 F -0.131 7.131 25 F -0.202 7.202 26 C 0.003 3.997 27 C -0.099 4.099 28 H 0.096 0.904 29 C -0.191 4.191 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.244 0.756 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.611 1.057 -16.640 20.319 hybrid contribution -0.525 -0.425 1.022 1.225 sum -12.136 0.633 -15.619 19.789 Atomic orbital electron populations 1.23563 0.74717 1.05750 1.02522 1.86520 1.24996 1.32473 1.83405 1.23520 0.91722 0.81399 0.71397 1.90677 1.67495 1.37253 1.46132 1.22226 0.86936 0.99093 1.01715 0.82246 1.21986 0.88385 0.95820 0.95179 1.47472 1.33858 1.30235 1.26092 1.15686 0.81696 0.81589 0.79441 1.90890 1.34972 1.50039 1.74449 1.45017 1.37359 1.27741 1.26982 1.19234 0.90826 0.95712 0.78032 0.93366 1.21193 1.33186 0.89897 1.15297 0.88886 1.26007 0.94199 1.03827 0.94987 1.70538 1.27643 1.35712 1.17017 0.85138 0.79343 0.77578 0.77135 1.19439 1.21159 1.18141 1.23406 0.75451 0.76870 0.88775 1.92979 1.39295 1.91072 1.95257 1.93375 1.72646 1.93023 1.54076 1.93063 1.96407 1.37465 1.93288 1.22360 0.97532 0.88721 0.91048 1.22289 0.94649 0.93275 0.99684 0.90380 1.21673 1.02903 1.01366 0.93167 0.85162 0.91396 0.92442 0.91785 0.87751 0.75581 0.92162 0.91719 0.89204 0.91870 0.91239 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.17 10.55 -51.36 -0.54 -6.72 16 3 C 0.48 9.32 7.12 71.23 0.51 9.83 16 4 O -0.53 -13.13 15.51 21.94 0.34 -12.79 16 5 C -0.08 -1.33 2.92 -10.35 -0.03 -1.36 16 6 H 0.16 1.59 8.04 -2.39 -0.02 1.57 16 7 C 0.11 2.33 5.72 86.73 0.50 2.83 16 8 N -0.64 -19.10 3.33 -829.76 -2.76 -21.86 16 9 C 0.71 29.55 8.02 179.05 1.44 30.99 16 10 O -0.62 -31.40 15.17 -3.96 -0.06 -31.46 16 11 N -0.72 -29.98 4.95 -461.42 -2.28 -32.27 16 12 C 0.27 13.76 2.21 44.24 0.10 13.86 16 13 H 0.05 2.83 7.58 -2.39 -0.02 2.81 16 14 C -0.56 -28.12 8.46 25.60 0.22 -27.90 16 15 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 16 C 0.02 0.77 5.20 84.65 0.44 1.21 16 17 N -0.88 -48.58 9.50 21.45 0.20 -48.38 16 18 Si 0.98 40.10 29.54 68.60 2.03 42.13 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 C 0.41 21.85 2.81 71.98 0.20 22.05 16 23 F -0.20 -10.23 16.94 44.97 0.76 -9.47 16 24 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 25 F -0.22 -11.83 15.68 44.97 0.70 -11.13 16 26 C 0.13 3.02 6.37 86.85 0.55 3.57 16 27 C -0.08 -1.48 2.69 -9.40 -0.03 -1.51 16 28 H 0.08 1.81 7.49 -2.39 -0.02 1.79 16 29 C -0.13 -1.76 9.31 71.98 0.67 -1.09 16 30 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 33 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 14.44 7.52 -92.71 -0.70 13.75 16 36 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.06 1.82 8.04 -2.39 -0.02 1.80 16 38 H 0.09 1.82 7.99 -2.39 -0.02 1.80 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 Total: -1.00 -71.82 354.22 5.12 -66.70 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.38 Total: 19.22 kcal Atomic # 6 Polarization: 48.27 SS G_CDS: 5.76 Total: 54.04 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.84 Total: -102.50 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.26 Total: -50.97 kcal Atomic # 9 Polarization: -30.66 SS G_CDS: 2.05 Total: -28.61 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -71.82 5.12 -66.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932890015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.904 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds