Wall clock time and date at job start Tue Mar 31 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35908 * 116.99664 * 2 1 4 4 C 1.38832 * 119.97875 * 359.97438 * 3 2 1 5 5 C 1.38350 * 120.22211 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.90751 * 180.02562 * 5 4 3 7 7 C 1.38132 * 120.18173 * 359.71511 * 5 4 3 8 8 C 1.39548 * 119.95052 * 0.58289 * 7 5 4 9 9 C 1.47860 * 120.11086 * 179.69372 * 8 7 5 10 10 O 1.21552 * 120.00138 * 187.01665 * 9 8 7 11 11 N 1.34778 * 120.00510 * 7.02293 * 9 8 7 12 12 C 1.47419 * 125.65186 * 174.36335 * 11 9 8 13 13 C 1.54912 * 104.92840 * 155.83808 * 12 11 9 14 14 H 1.09009 * 111.00462 * 278.98894 * 13 12 11 15 15 N 1.46501 * 111.00527 * 155.13776 * 13 12 11 16 16 C 1.36939 * 120.00065 * 86.45319 * 15 13 12 17 17 H 1.08003 * 120.00068 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00221 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00044 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47197 * 89.99848 * 20 18 16 22 22 H 1.48498 * 109.46956 * 209.99651 * 20 18 16 23 23 H 1.48493 * 109.47380 * 329.99867 * 20 18 16 24 24 C 1.55438 * 101.45335 * 37.00219 * 13 12 11 25 25 H 1.08999 * 110.71131 * 82.88937 * 24 13 12 26 26 C 1.53004 * 110.86234 * 206.07906 * 24 13 12 27 27 C 1.47023 * 125.64522 * 354.38353 * 11 9 8 28 28 C 1.38464 * 119.97322 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47624 * 299.99867 * 1 2 3 30 30 H 1.09004 * 109.47363 * 60.00292 * 1 2 3 31 31 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.88584 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.02430 * 180.30058 * 7 5 4 34 34 H 1.09003 * 110.36607 * 274.72624 * 12 11 9 35 35 H 1.09001 * 110.36947 * 36.94391 * 12 11 9 36 36 H 0.97001 * 119.99753 * 266.45090 * 15 13 12 37 37 H 0.97007 * 120.00020 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47409 * 175.08954 * 26 24 13 39 39 H 1.09008 * 109.46633 * 295.08920 * 26 24 13 40 40 H 1.08993 * 109.47242 * 55.08212 * 26 24 13 41 41 H 1.09003 * 109.88220 * 300.46229 * 27 11 9 42 42 H 1.09008 * 109.88341 * 61.46657 * 27 11 9 43 43 H 1.08002 * 120.09092 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2893 2.3750 -0.0005 5 6 1.9121 3.6104 0.0000 6 17 0.9580 5.0608 0.0000 7 6 3.2909 3.6930 0.0070 8 6 4.0587 2.5278 0.0013 9 6 5.5349 2.6121 0.0019 10 8 6.2013 1.6044 -0.1317 11 7 6.1417 3.8063 0.1507 12 6 7.5938 4.0213 0.2868 13 6 7.8282 5.4765 -0.1898 14 1 7.8686 5.5296 -1.2779 15 7 9.0443 6.0350 0.4065 16 6 10.2576 5.8310 -0.1946 17 1 10.3182 5.2580 -1.1082 18 6 11.4098 6.3605 0.3700 19 7 12.5760 6.1640 -0.2075 20 14 11.3052 7.3509 1.9504 21 1 11.4505 6.4412 3.1152 22 1 12.3922 8.3623 1.9736 23 1 9.9897 8.0364 2.0189 24 6 6.5589 6.1884 0.3562 25 1 6.6898 6.4602 1.4036 26 6 6.2227 7.4226 -0.4834 27 6 5.4650 5.1104 0.2045 28 6 3.4287 1.2829 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2110 2.3159 -0.0014 33 1 3.7744 4.6588 0.0123 34 1 7.8979 3.9094 1.3276 35 1 8.1417 3.3222 -0.3450 36 1 8.9899 6.5493 1.2271 37 1 13.3812 6.5338 0.1874 38 1 5.2835 7.8533 -0.1363 39 1 7.0198 8.1592 -0.3818 40 1 6.1255 7.1345 -1.5301 41 1 4.9061 5.2764 -0.7165 42 1 4.7889 5.1423 1.0589 43 1 4.0180 0.3778 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939372113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:45 Heat of formation + Delta-G solvation = -8.729831 kcal Electronic energy + Delta-G solvation = -26769.004756 eV Core-core repulsion = 22842.018397 eV Total energy + Delta-G solvation = -3926.986358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95920 -39.88951 -38.03439 -37.61757 -36.52728 -34.45121 -32.56232 -31.51211 -31.22971 -30.72050 -28.03417 -27.81770 -26.58851 -24.54022 -23.08580 -22.92973 -21.34094 -20.41068 -19.98325 -18.45941 -17.61163 -17.13207 -16.71193 -16.36416 -16.19305 -15.69329 -15.46733 -14.85588 -14.66201 -14.27247 -14.19061 -13.70284 -13.66319 -13.51241 -13.32556 -12.92862 -12.81503 -12.63872 -12.50990 -12.29047 -11.90210 -11.78034 -11.62584 -11.41982 -11.38208 -11.18829 -11.14422 -10.81024 -10.68181 -10.34753 -10.02060 -9.91638 -9.65723 -9.32132 -9.06777 -8.70034 -8.50661 -7.40694 -5.84306 -3.22882 0.39681 0.83478 1.65904 2.60995 2.65790 3.09841 3.31660 3.34824 3.41206 3.47789 4.16694 4.41875 4.46297 4.51789 4.62460 4.69870 4.71508 4.77472 4.86322 4.86665 5.01977 5.07577 5.18722 5.26658 5.36507 5.49036 5.62376 5.63347 5.66805 5.70520 5.73839 5.87336 5.99638 6.02129 6.07817 6.22541 6.34195 6.39867 6.47804 6.72623 6.85262 7.55793 7.89604 8.15030 8.33931 9.10195 9.81862 9.99297 11.33277 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002743 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.162074 B =10204.121976 C =11339.115234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.132 3.868 4 C -0.183 4.183 5 C -0.003 4.003 6 Cl -0.061 7.061 7 C -0.155 4.155 8 C -0.072 4.072 9 C 0.569 3.431 10 O -0.530 6.530 11 N -0.604 5.604 12 C 0.081 3.919 13 C 0.183 3.817 14 H 0.075 0.925 15 N -0.734 5.734 16 C -0.253 4.253 17 H 0.093 0.907 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.118 4.118 25 H 0.085 0.915 26 C -0.137 4.137 27 C 0.094 3.906 28 C -0.089 4.089 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.036 -4.611 1.247 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.087 3.913 4 C -0.203 4.203 5 C -0.030 4.030 6 Cl -0.032 7.032 7 C -0.173 4.173 8 C -0.075 4.075 9 C 0.358 3.642 10 O -0.408 6.408 11 N -0.337 5.337 12 C -0.043 4.043 13 C 0.071 3.929 14 H 0.093 0.907 15 N -0.375 5.375 16 C -0.382 4.382 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.138 4.138 25 H 0.104 0.896 26 C -0.195 4.195 27 C -0.028 4.028 28 C -0.109 4.109 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.192 0.808 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -28.466 -5.330 1.007 28.978 hybrid contribution -0.433 0.912 1.224 1.587 sum -28.899 -4.418 2.231 29.320 Atomic orbital electron populations 1.23144 0.77949 1.04435 1.01564 1.86143 1.21685 1.25812 1.88549 1.18635 0.91757 0.84114 0.96819 1.21247 1.00871 0.90702 1.07477 1.20503 0.91694 0.87469 1.03344 1.98388 1.71826 1.36203 1.96821 1.22677 0.92004 1.01547 1.01056 1.19646 0.93406 0.92657 1.01835 1.17682 0.86384 0.82563 0.77621 1.90807 1.65731 1.34430 1.49791 1.48340 1.09598 1.05012 1.70769 1.23432 0.77550 1.01160 1.02174 1.21401 0.85210 0.88986 0.97302 0.90712 1.42609 1.02941 1.63030 1.28910 1.19058 0.82525 1.29250 1.07378 0.88953 1.24682 0.95189 1.00289 0.98495 1.69701 0.97622 1.49470 1.40674 0.86574 0.77055 0.80357 0.84657 1.20977 1.21649 1.20212 1.22628 0.95219 0.94601 1.01369 0.89623 1.21703 1.01359 0.97030 0.99415 1.22622 0.95876 0.83187 1.01162 1.20589 0.91259 0.98613 1.00447 0.92383 0.92367 0.87793 0.84099 0.80768 0.91131 0.90121 0.80216 0.92889 0.92899 0.91354 0.92354 0.90274 0.90637 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.89 10.49 -19.45 -0.20 -3.09 16 3 C 0.13 1.36 6.68 -39.28 -0.26 1.10 16 4 C -0.18 -1.62 8.81 -39.32 -0.35 -1.97 16 5 C 0.00 -0.03 6.31 -39.58 -0.25 -0.28 16 6 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 7 C -0.15 -1.64 8.39 -39.13 -0.33 -1.97 16 8 C -0.07 -0.92 5.87 -104.99 -0.62 -1.53 16 9 C 0.57 9.04 7.81 -12.32 -0.10 8.94 16 10 O -0.53 -10.28 16.60 5.32 0.09 -10.19 16 11 N -0.60 -9.06 3.33 -176.00 -0.59 -9.65 16 12 C 0.08 1.44 6.62 -2.53 -0.02 1.42 16 13 C 0.18 3.22 3.15 -65.63 -0.21 3.01 16 14 H 0.08 1.38 8.04 -51.92 -0.42 0.96 16 15 N -0.73 -16.03 5.08 -51.20 -0.26 -16.29 16 16 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16 17 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 20 Si 0.88 21.21 27.74 -169.99 -4.71 16.50 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 24 C -0.12 -1.56 3.17 -88.63 -0.28 -1.84 16 25 H 0.09 1.12 8.01 -51.93 -0.42 0.70 16 26 C -0.14 -1.60 9.14 37.16 0.34 -1.26 16 27 C 0.09 1.09 4.47 -3.06 -0.01 1.08 16 28 C -0.09 -1.09 9.53 -39.02 -0.37 -1.46 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.14 0.91 6.28 -52.49 -0.33 0.58 16 33 H 0.18 1.67 2.73 -58.15 -0.16 1.51 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.60 7.98 -51.93 -0.41 1.19 16 36 H 0.36 7.77 5.58 -40.82 -0.23 7.54 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.79 6.42 -51.93 -0.33 0.46 16 42 H 0.08 0.74 6.73 -51.92 -0.35 0.39 16 43 H 0.15 1.91 7.67 -52.49 -0.40 1.51 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -32.41 364.45 -8.17 -40.58 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.55 Total: 6.75 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.71 Total: -0.40 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.07 Total: -53.62 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.12 Total: -13.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.41 -8.17 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939372113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.855 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds