Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35911 * 116.99450 * 2 1 4 4 C 1.38824 * 119.98333 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22895 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.90928 * 180.02562 * 5 4 3 7 7 C 1.38126 * 120.17966 * 0.03070 * 5 4 3 8 8 C 1.39552 * 119.94857 * 359.97438 * 7 5 4 9 9 C 1.47868 * 120.10850 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99665 * 187.16825 * 9 8 7 11 11 N 1.34783 * 120.00161 * 7.16825 * 9 8 7 12 12 C 1.47022 * 125.64227 * 354.32233 * 11 9 8 13 13 C 1.54329 * 107.26531 * 181.01300 * 12 11 9 14 14 H 1.08998 * 110.72123 * 263.83251 * 13 12 11 15 15 C 1.53001 * 110.87200 * 140.62878 * 13 12 11 16 16 C 1.55160 * 102.94424 * 22.19496 * 13 12 11 17 17 H 1.08993 * 111.00777 * 206.38434 * 16 13 12 18 18 N 1.46497 * 111.00290 * 82.56778 * 16 13 12 19 19 C 1.36940 * 120.00106 * 155.00049 * 18 16 13 20 20 H 1.07998 * 119.99570 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00204 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00003 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47441 * 60.00174 * 23 21 19 25 25 H 1.48499 * 109.47413 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47336 * 300.00389 * 23 21 19 27 27 C 1.47416 * 125.64813 * 174.27425 * 11 9 8 28 28 C 1.38468 * 119.97062 * 180.29745 * 3 2 1 29 29 H 1.09000 * 109.47203 * 300.00048 * 1 2 3 30 30 H 1.09005 * 109.46889 * 60.00281 * 1 2 3 31 31 H 1.09002 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.88395 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.02767 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.88116 * 61.60387 * 12 11 9 35 35 H 1.08989 * 109.88571 * 300.42840 * 12 11 9 36 36 H 1.08997 * 109.47095 * 303.95000 * 15 13 12 37 37 H 1.08997 * 109.47098 * 63.94625 * 15 13 12 38 38 H 1.08997 * 109.46993 * 183.95211 * 15 13 12 39 39 H 0.97003 * 120.00476 * 335.00492 * 18 16 13 40 40 H 0.96994 * 119.99825 * 179.97438 * 22 21 19 41 41 H 1.09001 * 110.37050 * 37.07340 * 27 11 9 42 42 H 1.09003 * 110.45743 * 274.80070 * 27 11 9 43 43 H 1.07997 * 120.09071 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9121 3.6105 0.0000 6 17 0.9580 5.0608 0.0000 7 6 3.2909 3.6932 0.0004 8 6 4.0587 2.5278 0.0009 9 6 5.5350 2.6122 0.0019 10 8 6.2014 1.6041 -0.1291 11 7 6.1417 3.8069 0.1481 12 6 5.4649 5.1111 0.1972 13 6 6.5587 6.1894 0.3479 14 1 6.6879 6.4639 1.3948 15 6 6.2289 7.4221 -0.4962 16 6 7.8262 5.4766 -0.1931 17 1 8.7294 5.8951 0.2509 18 7 7.8832 5.5449 -1.6554 19 6 9.0892 5.4592 -2.2984 20 1 9.9983 5.3409 -1.7274 21 6 9.1431 5.5233 -3.6840 22 7 8.0352 5.6670 -4.3798 23 14 10.7882 5.4057 -4.5610 24 1 11.4303 4.1065 -4.2368 25 1 10.5752 5.5007 -6.0276 26 1 11.6671 6.5169 -4.1159 27 6 7.5935 4.0220 0.2861 28 6 3.4288 1.2829 -0.0062 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2110 2.3159 -0.0005 33 1 3.7745 4.6589 0.0013 34 1 4.7894 5.1463 1.0520 35 1 4.9078 5.2747 -0.7252 36 1 6.0916 7.1245 -1.5357 37 1 5.3125 7.8816 -0.1258 38 1 7.0477 8.1384 -0.4285 39 1 7.0667 5.6508 -2.1682 40 1 8.0729 5.7121 -5.3479 41 1 8.1424 3.3225 -0.3443 42 1 7.8976 3.9124 1.3271 43 1 4.0180 0.3779 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939372114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -9.511402 kcal Electronic energy + Delta-G solvation = -27255.825049 eV Core-core repulsion = 23328.804799 eV Total energy + Delta-G solvation = -3927.020250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77917 -39.73057 -37.90491 -37.43919 -36.35054 -34.07808 -32.35963 -31.32250 -30.98359 -30.19875 -27.84582 -27.67469 -26.33471 -24.31534 -23.41489 -22.75974 -21.63926 -20.02961 -19.32291 -18.28967 -17.45052 -16.90068 -16.54811 -16.11675 -15.97064 -15.51228 -15.25872 -14.73428 -14.52807 -14.22672 -14.01716 -13.78414 -13.46649 -13.34720 -13.02069 -12.80403 -12.62944 -12.42841 -12.14033 -12.09525 -11.60842 -11.51929 -11.43224 -11.23566 -11.12484 -10.99565 -10.89987 -10.74133 -10.44837 -10.25399 -9.91681 -9.71715 -9.63654 -9.14205 -9.02647 -8.52837 -8.29106 -7.02252 -5.81148 -3.10664 0.58091 1.01427 1.82961 2.80951 2.82623 3.32514 3.43243 3.48542 3.48727 3.68088 4.36373 4.55133 4.57968 4.66669 4.78008 4.81774 4.90243 4.95171 5.04675 5.12821 5.13893 5.26960 5.38369 5.50771 5.62003 5.64669 5.68601 5.82484 5.88156 5.91384 6.05432 6.11947 6.18138 6.23313 6.28934 6.33795 6.50437 6.66331 6.76548 6.89862 7.00290 7.66494 7.79016 8.36545 8.38035 9.48573 10.02459 10.36971 11.40902 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.003226 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.973536 B = 8677.119782 C = 9351.258966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.131 3.869 4 C -0.184 4.184 5 C -0.003 4.003 6 Cl -0.062 7.062 7 C -0.152 4.152 8 C -0.070 4.070 9 C 0.571 3.429 10 O -0.533 6.533 11 N -0.593 5.593 12 C 0.094 3.906 13 C -0.116 4.116 14 H 0.082 0.918 15 C -0.133 4.133 16 C 0.171 3.829 17 H 0.077 0.923 18 N -0.707 5.707 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.076 3.924 28 C -0.090 4.090 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.176 0.824 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.250 -2.946 12.837 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.085 3.915 4 C -0.204 4.204 5 C -0.030 4.030 6 Cl -0.033 7.033 7 C -0.170 4.170 8 C -0.073 4.073 9 C 0.359 3.641 10 O -0.412 6.412 11 N -0.325 5.325 12 C -0.029 4.029 13 C -0.136 4.136 14 H 0.101 0.899 15 C -0.191 4.191 16 C 0.058 3.942 17 H 0.095 0.905 18 N -0.347 5.347 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.049 4.049 28 C -0.109 4.109 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.193 0.807 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.741 -3.614 12.653 21.294 hybrid contribution 0.045 0.115 -0.781 0.791 sum -16.696 -3.499 11.872 20.783 Atomic orbital electron populations 1.23128 0.78087 1.04299 1.01540 1.86136 1.21580 1.25889 1.88663 1.18617 0.91746 0.84055 0.97082 1.21218 1.00764 0.90706 1.07683 1.20493 0.91694 0.87399 1.03402 1.98382 1.71825 1.36298 1.96833 1.22702 0.91995 1.01660 1.00665 1.19664 0.93539 0.92612 1.01503 1.17614 0.86323 0.82632 0.77544 1.90780 1.65740 1.34619 1.50023 1.48156 1.09122 1.04868 1.70330 1.22598 0.95935 0.83474 1.00856 1.22602 0.95860 0.94893 1.00290 0.89946 1.21620 1.00422 0.96236 1.00816 1.21389 0.95209 0.90517 0.87062 0.90535 1.42333 1.07303 1.86322 0.98781 1.19186 0.86062 1.42951 0.89517 0.91034 1.24739 0.96971 1.02383 0.96345 1.69641 1.25635 1.56385 1.06027 0.86267 0.83289 0.77905 0.78691 1.21190 1.21732 1.21222 1.23412 0.79282 1.02365 0.99828 1.20569 0.91215 0.98588 1.00573 0.92459 0.92378 0.87900 0.84184 0.80712 0.91112 0.90323 0.91023 0.93675 0.92014 0.77868 0.93377 0.89638 0.92497 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.39 10.49 -19.46 -0.20 -3.59 16 3 C 0.13 1.59 6.68 -39.28 -0.26 1.33 16 4 C -0.18 -1.99 8.81 -39.32 -0.35 -2.33 16 5 C 0.00 -0.04 6.31 -39.58 -0.25 -0.29 16 6 Cl -0.06 -0.65 28.95 -51.86 -1.50 -2.15 16 7 C -0.15 -2.00 8.39 -39.13 -0.33 -2.33 16 8 C -0.07 -1.06 5.87 -104.99 -0.62 -1.68 16 9 C 0.57 10.48 7.81 -12.32 -0.10 10.38 16 10 O -0.53 -11.58 16.60 5.32 0.09 -11.49 16 11 N -0.59 -10.16 3.33 -175.93 -0.59 -10.74 16 12 C 0.09 1.32 4.46 -3.06 -0.01 1.30 16 13 C -0.12 -1.65 3.41 -88.78 -0.30 -1.95 16 14 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.13 -1.93 8.76 37.16 0.33 -1.60 16 16 C 0.17 3.09 3.47 -65.78 -0.23 2.87 16 17 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 18 N -0.71 -16.52 4.58 -51.35 -0.24 -16.75 16 19 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.08 1.37 6.63 -2.53 -0.02 1.36 16 28 C -0.09 -1.28 9.53 -39.02 -0.37 -1.66 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 1.15 6.28 -52.49 -0.33 0.82 16 33 H 0.18 2.17 2.74 -58.06 -0.16 2.01 16 34 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 35 H 0.08 1.15 6.41 -51.94 -0.33 0.82 16 36 H 0.07 1.25 6.44 -51.93 -0.33 0.92 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.39 9.66 6.36 -40.82 -0.26 9.40 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.09 1.85 7.99 -51.93 -0.41 1.43 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.15 2.19 7.66 -52.49 -0.40 1.79 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -32.02 364.13 -8.47 -40.49 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.46 Total: 8.77 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.76 Total: -0.45 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.10 Total: -54.21 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.12 Total: -15.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.02 -8.47 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939372114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.979 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds