Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35654 * 117.00288 * 2 1 4 4 C 1.38642 * 120.13787 * 359.97438 * 3 2 1 5 5 C 1.38211 * 120.06857 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.81836 * 180.02562 * 5 4 3 7 7 C 1.38708 * 120.36178 * 0.02562 * 5 4 3 8 8 C 1.37732 * 120.28331 * 359.68102 * 7 5 4 9 9 C 1.39739 * 119.92302 * 0.59526 * 8 7 5 10 10 C 1.47477 * 120.17994 * 179.69797 * 9 8 7 11 11 O 1.21590 * 120.00289 * 179.72814 * 10 9 8 12 12 N 1.34782 * 119.99696 * 359.44897 * 10 9 8 13 13 C 1.46499 * 119.99871 * 180.27329 * 12 10 9 14 14 H 1.09004 * 109.46920 * 325.00391 * 13 12 10 15 15 C 1.52995 * 109.46967 * 85.00330 * 13 12 10 16 16 C 1.53001 * 109.47056 * 205.00504 * 13 12 10 17 17 C 1.53945 * 113.74103 * 162.19974 * 16 13 12 18 18 N 1.47813 * 86.03478 * 222.08220 * 17 16 13 19 19 C 1.36935 * 134.45426 * 204.64279 * 18 17 16 20 20 H 1.07994 * 120.00023 * 182.58544 * 19 18 17 21 21 C 1.38809 * 120.00061 * 2.58700 * 19 18 17 22 22 N 1.31614 * 120.00066 * 353.41149 * 21 19 18 23 23 Si 1.86805 * 119.99982 * 173.41520 * 21 19 18 24 24 H 1.48504 * 109.47073 * 94.97037 * 23 21 19 25 25 H 1.48503 * 109.47086 * 214.96957 * 23 21 19 26 26 H 1.48495 * 109.47182 * 334.97171 * 23 21 19 27 27 C 1.47577 * 91.05116 * 24.54790 * 18 17 16 28 28 H 1.09000 * 109.47387 * 299.99955 * 1 2 3 29 29 H 1.09002 * 109.47294 * 60.00213 * 1 2 3 30 30 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.96824 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.85246 * 179.97438 * 7 5 4 33 33 H 1.08004 * 120.03309 * 180.29698 * 8 7 5 34 34 H 0.97003 * 120.00021 * 0.28012 * 12 10 9 35 35 H 1.09000 * 109.47363 * 184.48313 * 15 13 12 36 36 H 1.09005 * 109.47323 * 304.49048 * 15 13 12 37 37 H 1.09005 * 109.47285 * 64.48815 * 15 13 12 38 38 H 1.09005 * 112.94340 * 293.79018 * 16 13 12 39 39 H 1.08997 * 113.76690 * 336.34761 * 17 16 13 40 40 H 1.09003 * 113.76988 * 107.74403 * 17 16 13 41 41 H 0.97005 * 120.00312 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.77036 * 221.14735 * 27 18 17 43 43 H 1.09004 * 113.86822 * 89.76504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3733 -0.0005 5 6 1.9216 3.6039 -0.0011 6 17 0.9734 5.0580 -0.0011 7 6 3.3064 3.6835 -0.0016 8 6 4.0681 2.5360 0.0050 9 6 3.4445 1.2854 -0.0003 10 6 4.2546 0.0531 0.0000 11 8 3.7087 -1.0334 0.0004 12 7 5.6002 0.1311 -0.0058 13 6 6.4049 -1.0930 -0.0115 14 1 5.9035 -1.8601 0.5787 15 6 6.5736 -1.5856 -1.4502 16 6 7.7801 -0.8022 0.5926 17 6 8.5421 -2.0644 1.0354 18 7 8.9193 -1.2906 2.2369 19 6 9.9544 -1.3520 3.1314 20 1 9.9813 -0.6763 3.9734 21 6 10.9691 -2.2829 2.9557 22 7 10.8727 -3.1904 2.0074 23 14 12.4713 -2.2475 4.0655 24 1 12.2777 -3.1967 5.1911 25 1 13.6720 -2.6424 3.2860 26 1 12.6584 -0.8755 4.6017 27 6 7.7345 -0.4241 2.0842 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2140 2.3188 -0.0014 32 1 3.7894 4.6495 -0.0024 33 1 5.1461 2.6027 0.0094 34 1 6.0357 0.9979 -0.0061 35 1 7.1038 -2.5380 -1.4483 36 1 5.5926 -1.7167 -1.9068 37 1 7.1448 -0.8530 -2.0204 38 1 8.3756 -0.1205 -0.0148 39 1 7.8958 -2.9163 1.2465 40 1 9.3847 -2.3173 0.3918 41 1 11.5819 -3.8406 1.8844 42 1 7.9334 0.6301 2.2766 43 1 6.8494 -0.7916 2.6037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970340672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = -17.686149 kcal Electronic energy + Delta-G solvation = -26539.665558 eV Core-core repulsion = 22612.290825 eV Total energy + Delta-G solvation = -3927.374734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73080 -40.54957 -39.40889 -38.67897 -37.33193 -36.12670 -34.16181 -32.85384 -31.32639 -31.12882 -29.30872 -28.22160 -26.59792 -25.81322 -24.94229 -23.43376 -22.70984 -21.45859 -20.84842 -19.50750 -18.76118 -18.23814 -17.74337 -16.99396 -16.88112 -16.73105 -16.30248 -16.08848 -15.79254 -15.70592 -15.29253 -14.87047 -14.75179 -14.57451 -14.29639 -14.03340 -13.53979 -13.40227 -13.20966 -13.06812 -12.96656 -12.94053 -12.80011 -12.65433 -12.38859 -12.32771 -12.03764 -12.00877 -11.83769 -11.77655 -11.55300 -11.22003 -10.81590 -10.80046 -10.12973 -9.94633 -9.35413 -8.91761 -7.90205 -5.22487 -0.40537 0.22590 0.95083 1.46418 1.47964 1.57516 1.78879 2.13995 2.26233 2.48510 2.68958 3.31180 3.39889 3.60805 3.63220 3.83765 3.90461 3.99009 4.00840 4.25573 4.29899 4.34712 4.35213 4.47179 4.50587 4.60606 4.70580 4.79776 4.82855 4.87368 4.88880 4.99033 5.05925 5.07914 5.14763 5.26585 5.32809 5.45061 5.54819 5.58507 5.67707 5.94831 6.27158 6.65566 6.93018 7.33067 7.61978 8.58118 9.27440 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.002321 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.913422 B =12058.906463 C =12908.898330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.181 3.819 4 C -0.214 4.214 5 C 0.026 3.974 6 Cl -0.052 7.052 7 C -0.154 4.154 8 C -0.024 4.024 9 C -0.189 4.189 10 C 0.556 3.444 11 O -0.565 6.565 12 N -0.704 5.704 13 C 0.164 3.836 14 H 0.058 0.942 15 C -0.151 4.151 16 C -0.107 4.107 17 C 0.170 3.830 18 N -0.643 5.643 19 C -0.236 4.236 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.265 1.265 27 C 0.127 3.873 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.009 0.991 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.066 0.934 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 17.683 -8.606 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.132 3.868 4 C -0.233 4.233 5 C -0.001 4.001 6 Cl -0.023 7.023 7 C -0.172 4.172 8 C -0.043 4.043 9 C -0.193 4.193 10 C 0.345 3.655 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.059 3.941 14 H 0.076 0.924 15 C -0.209 4.209 16 C -0.127 4.127 17 C 0.044 3.956 18 N -0.370 5.370 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.190 1.190 27 C 0.002 3.998 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.250 0.750 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -21.817 16.729 -8.461 28.765 hybrid contribution 0.602 -0.232 0.787 1.018 sum -21.215 16.497 -7.674 27.949 Atomic orbital electron populations 1.23478 0.76494 1.05688 1.02759 1.86391 1.23271 1.25718 1.86525 1.19093 0.91091 0.85037 0.91578 1.21188 1.01796 0.89734 1.10559 1.21032 0.92573 0.87497 0.99047 1.98401 1.72212 1.35281 1.96391 1.21197 0.91023 1.00605 1.04396 1.21429 1.01635 0.88924 0.92318 1.19548 0.91028 0.94404 1.14302 1.18274 0.82422 0.88730 0.76098 1.90802 1.72382 1.30428 1.50892 1.45794 1.05053 1.10188 1.74623 1.20731 0.89719 0.86599 0.97069 0.92353 1.22037 1.01578 1.02030 0.95247 1.23443 0.94345 0.99307 0.95593 1.22137 0.94296 0.91826 0.87319 1.46494 1.23277 1.36239 1.30989 1.19445 0.97779 1.14967 1.04231 0.89883 1.25642 1.01861 0.97631 1.00968 1.70014 1.34235 1.19693 1.36352 0.85064 0.78780 0.78014 0.77476 1.21791 1.21854 1.18969 1.22677 0.88395 0.95467 0.93242 0.91024 0.90771 0.87046 0.82085 0.81497 0.81232 0.75017 0.91956 0.93121 0.90551 0.87227 0.97330 0.93556 0.94231 0.91621 0.95350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -7.73 8.57 -68.76 -0.59 -8.32 16 3 C 0.18 4.03 6.70 22.84 0.15 4.18 16 4 C -0.21 -3.47 8.80 22.36 0.20 -3.27 16 5 C 0.03 0.37 6.32 22.38 0.14 0.52 16 6 Cl -0.05 -0.66 28.94 -2.72 -0.08 -0.74 16 7 C -0.15 -1.95 9.80 22.26 0.22 -1.73 16 8 C -0.02 -0.36 9.53 22.51 0.21 -0.15 16 9 C -0.19 -4.27 5.89 -20.01 -0.12 -4.38 16 10 C 0.56 16.10 7.73 86.68 0.67 16.77 16 11 O -0.57 -21.41 14.82 16.93 0.25 -21.16 16 12 N -0.70 -17.50 4.90 -445.76 -2.19 -19.69 16 13 C 0.16 5.03 2.28 44.99 0.10 5.13 16 14 H 0.06 2.18 7.49 -2.38 -0.02 2.16 16 15 C -0.15 -4.18 9.43 71.98 0.68 -3.50 16 16 C -0.11 -3.70 3.35 -10.14 -0.03 -3.73 16 17 C 0.17 8.09 7.03 86.44 0.61 8.70 16 18 N -0.64 -33.24 3.70 -716.19 -2.65 -35.89 16 19 C -0.24 -13.37 10.69 84.03 0.90 -12.47 16 20 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.95 -58.25 11.43 21.65 0.25 -58.00 16 23 Si 0.98 45.99 29.56 68.60 2.03 48.01 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.13 4.98 8.38 86.48 0.72 5.70 16 28 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 29 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.16 1.90 6.30 -2.91 -0.02 1.88 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.17 1.51 6.40 -2.91 -0.02 1.49 16 34 H 0.41 7.33 6.63 -92.71 -0.61 6.71 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 39 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 40 H 0.05 2.44 7.20 -2.39 -0.02 2.42 16 41 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 43 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -77.19 373.02 3.48 -73.71 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.43 Total: 12.50 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 6.03 Total: 9.57 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -4.59 Total: -113.58 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.34 Total: -29.48 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -77.19 3.48 -73.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970340672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.027 kcal (2) G-P(sol) polarization free energy of solvation -77.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds