Wall clock time and date at job start Tue Mar 31 2020 20:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35714 * 116.99453 * 2 1 4 4 C 1.39056 * 119.90258 * 0.02562 * 3 2 1 5 5 C 1.37648 * 120.12074 * 179.71932 * 4 3 2 6 6 C 1.39776 * 119.92624 * 0.51086 * 5 4 3 7 7 C 1.47536 * 120.09940 * 179.76825 * 6 5 4 8 8 O 1.21594 * 119.99596 * 179.72223 * 7 6 5 9 9 N 1.34768 * 119.99758 * 359.72103 * 7 6 5 10 10 C 1.46500 * 119.99743 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47659 * 34.99804 * 10 9 7 12 12 C 1.53001 * 109.46866 * 274.99573 * 10 9 7 13 13 C 1.53000 * 109.47093 * 154.99920 * 10 9 7 14 14 C 1.53491 * 114.20581 * 295.13283 * 13 10 9 15 15 N 1.47068 * 87.98931 * 220.34690 * 14 13 10 16 16 C 1.36939 * 136.05910 * 207.08893 * 15 14 13 17 17 H 1.07998 * 120.00182 * 7.79505 * 16 15 14 18 18 C 1.38813 * 119.99786 * 187.79929 * 16 15 14 19 19 N 1.31621 * 119.99915 * 195.16074 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 15.16174 * 18 16 15 21 21 H 1.48505 * 109.47500 * 270.00100 * 20 18 16 22 22 H 1.48507 * 109.47318 * 30.00091 * 20 18 16 23 23 H 1.48506 * 109.47272 * 149.99672 * 20 18 16 24 24 C 1.47064 * 87.88132 * 27.34445 * 15 14 13 25 25 C 1.39853 * 119.80068 * 359.49052 * 6 5 4 26 26 Cl 1.73604 * 120.06049 * 180.27888 * 25 6 5 27 27 C 1.37894 * 119.87330 * 0.24840 * 25 6 5 28 28 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47243 * 299.99605 * 1 2 3 30 30 H 1.08999 * 109.47343 * 60.00239 * 1 2 3 31 31 H 1.07998 * 119.93762 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.03682 * 180.25172 * 5 4 3 33 33 H 0.96994 * 120.00381 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47388 * 304.84112 * 12 10 9 35 35 H 1.08999 * 109.47241 * 64.84153 * 12 10 9 36 36 H 1.09000 * 109.47347 * 184.83771 * 12 10 9 37 37 H 1.09004 * 113.41670 * 68.34300 * 13 10 9 38 38 H 1.09006 * 113.46406 * 105.56897 * 14 13 10 39 39 H 1.09000 * 113.52637 * 335.13768 * 14 13 10 40 40 H 0.96996 * 119.99969 * 354.93710 * 19 18 16 41 41 H 1.08997 * 113.47035 * 87.43951 * 24 15 14 42 42 H 1.09006 * 113.46815 * 217.87607 * 24 15 14 43 43 H 1.08007 * 119.96257 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2856 2.3741 0.0005 5 6 1.9057 3.6030 0.0064 6 6 3.3014 3.6799 0.0010 7 6 3.9700 4.9950 0.0020 8 8 5.1842 5.0597 0.0024 9 7 3.2349 6.1246 0.0025 10 6 3.8988 7.4305 0.0030 11 1 4.8139 7.3732 -0.5865 12 6 4.2420 7.8276 1.4402 13 6 2.9645 8.4778 -0.6061 14 6 2.6434 8.2481 -2.0894 15 7 2.7619 9.7007 -2.2866 16 6 2.2447 10.6230 -3.1567 17 1 1.4718 10.3341 -3.8535 18 6 2.7139 11.9294 -3.1430 19 7 2.0337 12.8793 -3.7492 20 14 4.3106 12.3392 -2.2644 21 1 4.0217 12.6912 -0.8510 22 1 5.2150 11.1620 -2.3064 23 1 4.9647 13.4901 -2.9375 24 6 3.6853 9.7257 -1.1423 25 6 4.0621 2.5063 0.0004 26 17 5.7959 2.5939 0.0010 27 6 3.4323 1.2796 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2073 2.3145 0.0005 32 1 1.3145 4.5069 0.0109 33 1 2.2663 6.0730 0.0018 34 1 3.3388 7.8014 2.0499 35 1 4.9741 7.1290 1.8452 36 1 4.6575 8.8352 1.4494 37 1 2.0927 8.6924 0.0119 38 1 1.6367 7.8674 -2.2616 39 1 3.4065 7.6749 -2.6160 40 1 1.2446 12.6558 -4.2671 41 1 4.7237 9.5421 -1.4183 42 1 3.5664 10.6039 -0.5076 43 1 4.0184 0.3724 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970595140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:41 Heat of formation + Delta-G solvation = -7.597064 kcal Electronic energy + Delta-G solvation = -26517.883880 eV Core-core repulsion = 22590.946642 eV Total energy + Delta-G solvation = -3926.937238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62852 -40.88067 -39.96793 -38.35004 -37.23904 -36.23986 -34.50895 -32.85359 -31.80670 -30.90308 -29.54177 -28.29206 -26.85471 -25.61745 -24.57827 -23.70796 -22.42350 -21.49316 -21.13572 -19.53310 -19.52086 -18.59161 -17.79014 -17.11961 -16.80161 -16.71755 -16.28806 -16.08549 -15.88475 -15.77535 -15.31811 -15.17804 -14.94514 -14.64995 -14.45559 -14.05805 -13.81557 -13.62677 -13.30206 -13.11809 -13.08255 -13.01824 -12.75831 -12.61331 -12.41964 -12.23489 -11.95441 -11.87584 -11.80008 -11.68290 -11.47853 -11.02445 -10.84542 -10.54572 -10.06581 -10.00826 -9.39602 -9.23766 -8.61538 -5.46167 -0.30818 0.04909 1.03039 1.40083 1.52377 1.66408 1.81201 2.08655 2.30765 2.53427 2.65748 3.02552 3.16480 3.49963 3.54919 3.76376 3.86492 3.89857 4.01050 4.18243 4.24013 4.32918 4.38685 4.43307 4.51646 4.62589 4.64481 4.67895 4.77859 4.79026 4.80700 4.82823 4.90149 5.01396 5.07610 5.12467 5.21722 5.30923 5.33442 5.47599 5.56857 5.96302 6.22717 6.60059 6.70589 7.28618 7.33918 8.29258 8.89839 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.002630 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.482730 B =10643.010766 C =11655.826738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.167 3.833 4 C -0.206 4.206 5 C -0.023 4.023 6 C -0.186 4.186 7 C 0.554 3.446 8 O -0.556 6.556 9 N -0.705 5.705 10 C 0.164 3.836 11 H 0.069 0.931 12 C -0.154 4.154 13 C -0.102 4.102 14 C 0.124 3.876 15 N -0.658 5.658 16 C -0.292 4.292 17 H 0.050 0.950 18 C -0.084 4.084 19 N -0.969 5.969 20 Si 1.099 2.901 21 H -0.270 1.270 22 H -0.259 1.259 23 H -0.304 1.304 24 C 0.103 3.897 25 C 0.038 3.962 26 Cl -0.044 7.044 27 C -0.167 4.167 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.411 0.589 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.247 0.753 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -28.941 14.310 32.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.119 3.881 4 C -0.224 4.224 5 C -0.042 4.042 6 C -0.190 4.190 7 C 0.342 3.658 8 O -0.435 6.435 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.087 0.913 12 C -0.212 4.212 13 C -0.122 4.122 14 C -0.001 4.001 15 N -0.386 5.386 16 C -0.419 4.419 17 H 0.068 0.932 18 C -0.276 4.276 19 N -0.614 5.614 20 Si 0.924 3.076 21 H -0.196 1.196 22 H -0.184 1.184 23 H -0.232 1.232 24 C -0.022 4.022 25 C 0.010 3.990 26 Cl -0.014 7.014 27 C -0.187 4.187 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.757 -27.687 14.555 31.329 hybrid contribution -1.453 -0.839 -1.291 2.117 sum -3.210 -28.526 13.264 31.622 Atomic orbital electron populations 1.23523 0.75377 1.06193 1.03085 1.86057 1.24272 1.26013 1.87289 1.19125 0.91354 0.85505 0.92097 1.21615 1.02343 0.90775 1.07672 1.21381 0.91294 0.99565 0.91968 1.19692 0.94686 0.91907 1.12732 1.18250 0.86797 0.84469 0.76284 1.90855 1.14531 1.87610 1.50554 1.45776 1.10715 1.04586 1.74681 1.20739 0.95064 0.80891 0.97475 0.91323 1.22080 1.02400 1.01851 0.94900 1.23247 0.99268 0.94274 0.95387 1.22517 0.99241 0.84938 0.93453 1.46323 1.52867 1.04400 1.34990 1.20001 1.15676 0.91142 1.15116 0.93204 1.27044 1.06502 0.91383 1.02696 1.71010 1.20124 1.33160 1.37123 0.83341 0.73158 0.75601 0.75526 1.19630 1.18360 1.23231 1.22852 0.94044 0.97132 0.88217 1.20785 0.85889 0.93555 0.98770 1.98421 1.08396 1.98562 1.96046 1.20261 0.92714 0.96997 1.08705 0.86142 0.90694 0.90983 0.80913 0.81567 0.75118 0.90595 0.93010 0.91053 0.86255 0.92686 0.94702 0.94397 0.93287 0.92909 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.03 10.48 -90.36 -0.95 -4.97 16 3 C 0.17 2.40 6.69 22.63 0.15 2.55 16 4 C -0.21 -2.20 9.01 22.33 0.20 -2.00 16 5 C -0.02 -0.31 9.53 22.50 0.21 -0.09 16 6 C -0.19 -3.85 5.88 -20.06 -0.12 -3.97 16 7 C 0.55 14.04 7.72 86.70 0.67 14.71 16 8 O -0.56 -18.20 13.62 -4.01 -0.05 -18.25 16 9 N -0.71 -14.86 4.90 -445.71 -2.19 -17.05 16 10 C 0.16 4.12 2.34 44.99 0.11 4.22 16 11 H 0.07 2.10 7.42 -2.39 -0.02 2.08 16 12 C -0.15 -3.37 9.48 71.98 0.68 -2.69 16 13 C -0.10 -2.96 3.52 -10.37 -0.04 -3.00 16 14 C 0.12 4.48 8.13 83.17 0.68 5.16 16 15 N -0.66 -31.41 3.62 -737.99 -2.67 -34.09 16 16 C -0.29 -17.03 11.03 84.03 0.93 -16.11 16 17 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 18 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 19 N -0.97 -63.03 13.70 21.65 0.30 -62.74 16 20 Si 1.10 53.68 25.50 68.60 1.75 55.43 16 21 H -0.27 -12.12 6.97 99.48 0.69 -11.43 16 22 H -0.26 -11.54 5.66 99.48 0.56 -10.97 16 23 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 24 C 0.10 4.00 5.17 83.26 0.43 4.43 16 25 C 0.04 0.84 6.35 22.58 0.14 0.98 16 26 Cl -0.04 -1.12 26.01 -2.72 -0.07 -1.19 16 27 C -0.17 -3.00 9.75 22.35 0.22 -2.78 16 28 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.07 0.10 7.65 -2.39 -0.02 0.09 16 30 H 0.07 0.15 7.65 -2.39 -0.02 0.13 16 31 H 0.17 0.68 6.27 -2.91 -0.02 0.66 16 32 H 0.17 1.19 6.40 -2.91 -0.02 1.17 16 33 H 0.41 6.06 6.62 -92.71 -0.61 5.44 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.12 3.06 8.14 -2.39 -0.02 3.05 16 38 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 41 H 0.05 1.92 6.87 -2.39 -0.02 1.90 16 42 H 0.05 2.08 6.22 -2.38 -0.01 2.06 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.39 364.40 2.19 -77.19 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.23 Total: 7.70 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.84 Total: -2.03 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.56 Total: -113.88 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.00 Total: -23.23 kcal Atomic # 14 Polarization: 53.68 SS G_CDS: 1.75 Total: 55.43 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -79.39 2.19 -77.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970595140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.597 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds