Wall clock time and date at job start Tue Mar 31 2020 20:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35741 * 116.99715 * 2 1 4 4 C 1.38968 * 119.91471 * 0.02951 * 3 2 1 5 5 C 1.37713 * 120.10042 * 179.69183 * 4 3 2 6 6 C 1.39740 * 119.93099 * 0.57844 * 5 4 3 7 7 C 1.47604 * 120.08385 * 179.69216 * 6 5 4 8 8 O 1.21583 * 120.00034 * 179.72130 * 7 6 5 9 9 N 1.34779 * 119.99716 * 359.72652 * 7 6 5 10 10 C 1.46501 * 119.99698 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.47204 * 324.99663 * 10 9 7 12 12 C 1.52994 * 109.47478 * 85.00105 * 10 9 7 13 13 C 1.53007 * 109.47063 * 205.00339 * 10 9 7 14 14 C 1.53943 * 113.73967 * 161.99682 * 13 10 9 15 15 N 1.47812 * 86.03288 * 222.07840 * 14 13 10 16 16 C 1.36941 * 134.45949 * 204.64456 * 15 14 13 17 17 H 1.07998 * 120.00363 * 179.86974 * 16 15 14 18 18 C 1.38817 * 119.99599 * 359.86590 * 16 15 14 19 19 N 1.31619 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99796 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46990 * 90.00397 * 20 18 16 22 22 H 1.48496 * 109.47393 * 210.00324 * 20 18 16 23 23 H 1.48504 * 109.47588 * 330.00800 * 20 18 16 24 24 C 1.47584 * 91.05227 * 24.55205 * 15 14 13 25 25 C 1.39716 * 119.83351 * 359.42007 * 6 5 4 26 26 C 1.37820 * 119.89341 * 0.27850 * 25 6 5 27 27 Cl 1.73608 * 119.96425 * 180.02562 * 26 25 6 28 28 H 1.09006 * 109.47297 * 299.99569 * 1 2 3 29 29 H 1.09003 * 109.47597 * 59.99483 * 1 2 3 30 30 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.95248 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.03420 * 180.27277 * 5 4 3 33 33 H 0.96998 * 120.00689 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47358 * 55.80638 * 12 10 9 35 35 H 1.09001 * 109.46924 * 295.80963 * 12 10 9 36 36 H 1.08997 * 109.47324 * 175.80826 * 12 10 9 37 37 H 1.09000 * 112.94115 * 293.58427 * 13 10 9 38 38 H 1.08997 * 113.77139 * 336.34419 * 14 13 10 39 39 H 1.09007 * 113.76732 * 107.74921 * 14 13 10 40 40 H 0.97001 * 119.99789 * 179.97438 * 19 18 16 41 41 H 1.08998 * 113.77081 * 221.14893 * 24 15 14 42 42 H 1.08993 * 113.87010 * 89.76485 * 24 15 14 43 43 H 1.07995 * 120.05620 * 180.25189 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.2865 2.3738 0.0006 5 6 1.9076 3.6029 0.0070 6 6 3.3029 3.6790 0.0007 7 6 3.9722 4.9946 0.0007 8 8 5.1863 5.0590 0.0003 9 7 3.2373 6.1244 0.0012 10 6 3.9016 7.4302 0.0017 11 1 4.8167 7.3721 0.5912 12 6 4.2448 7.8285 -1.4350 13 6 2.9676 8.4773 0.6120 14 6 3.6871 9.7605 1.0654 15 7 2.8258 9.6969 2.2649 16 6 2.3656 10.6204 3.1653 17 1 1.7273 10.3096 3.9791 18 6 2.7198 11.9559 3.0320 19 7 3.4975 12.3347 2.0400 20 14 2.0916 13.2158 4.2598 21 1 3.0523 13.3308 5.3865 22 1 1.9542 14.5340 3.5901 23 1 0.7690 12.7842 4.7793 24 6 2.6589 8.2397 2.1013 25 6 4.0630 2.5066 0.0001 26 6 3.4341 1.2803 0.0000 27 17 4.3767 -0.1776 0.0000 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2081 2.3147 0.0007 32 1 1.3170 4.5071 0.0120 33 1 2.2687 6.0731 0.0012 34 1 3.3396 7.8142 -2.0422 35 1 4.9681 7.1233 -1.8446 36 1 4.6712 8.8315 -1.4420 37 1 2.0818 8.6622 0.0043 38 1 4.7468 9.6184 1.2774 39 1 3.4912 10.6226 0.4278 40 1 3.7447 13.2680 1.9466 41 1 1.6439 7.8898 2.2893 42 1 3.4150 7.6484 2.6178 43 1 5.1416 2.5613 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970855242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:49 Heat of formation + Delta-G solvation = -20.357065 kcal Electronic energy + Delta-G solvation = -26191.727872 eV Core-core repulsion = 22264.237319 eV Total energy + Delta-G solvation = -3927.490553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63871 -40.78178 -39.67940 -38.26854 -37.37511 -36.22364 -34.17161 -32.60875 -31.90450 -30.86831 -29.30971 -28.29328 -26.57194 -25.76785 -24.67582 -23.79003 -22.65429 -21.49874 -20.81173 -19.51122 -18.78071 -18.50240 -17.78821 -16.99282 -16.84908 -16.75688 -16.39090 -15.98529 -15.78618 -15.58568 -15.14556 -14.95678 -14.87601 -14.67907 -14.20785 -14.04039 -13.86432 -13.39158 -13.25300 -13.06365 -12.96759 -12.94617 -12.66826 -12.57438 -12.35917 -12.18899 -12.07697 -11.98495 -11.93135 -11.78788 -11.57296 -11.21132 -10.95871 -10.85530 -10.11570 -10.05202 -9.33339 -8.90801 -7.89633 -5.22913 -0.28538 0.03507 1.06450 1.46056 1.48177 1.56610 1.73409 2.08718 2.18980 2.48242 2.66687 3.30687 3.40601 3.59064 3.64380 3.76573 3.83097 3.98957 4.03940 4.23151 4.29799 4.38032 4.44911 4.46885 4.59777 4.62177 4.76584 4.79636 4.80746 4.86105 4.88969 4.98521 5.01610 5.09655 5.15104 5.26941 5.33337 5.37629 5.53517 5.56619 5.67469 5.95456 6.17149 6.58530 6.93187 7.24123 7.62054 8.57768 9.27424 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002175 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.467930 B =12872.885556 C =13558.998354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.162 3.838 4 C -0.196 4.196 5 C -0.026 4.026 6 C -0.173 4.173 7 C 0.561 3.439 8 O -0.583 6.583 9 N -0.700 5.700 10 C 0.162 3.838 11 H 0.060 0.940 12 C -0.152 4.152 13 C -0.107 4.107 14 C 0.169 3.831 15 N -0.644 5.644 16 C -0.234 4.234 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.127 3.873 25 C -0.023 4.023 26 C -0.096 4.096 27 Cl -0.059 7.059 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.414 0.586 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.009 0.991 39 H 0.047 0.953 40 H 0.248 0.752 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 -25.944 -8.652 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.114 3.886 4 C -0.214 4.214 5 C -0.045 4.045 6 C -0.177 4.177 7 C 0.350 3.650 8 O -0.464 6.464 9 N -0.351 5.351 10 C 0.057 3.943 11 H 0.079 0.921 12 C -0.211 4.211 13 C -0.127 4.127 14 C 0.043 3.957 15 N -0.371 5.371 16 C -0.363 4.363 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.806 3.194 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.190 1.190 24 C 0.002 3.998 25 C -0.043 4.043 26 C -0.124 4.124 27 Cl -0.030 7.030 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.695 -25.912 -8.504 28.624 hybrid contribution 0.049 0.967 0.838 1.280 sum -8.646 -24.945 -7.666 27.491 Atomic orbital electron populations 1.23546 0.75261 1.06214 1.03226 1.86135 1.24359 1.25550 1.87032 1.19091 0.90115 0.86389 0.92999 1.21510 1.02194 0.90008 1.07690 1.21537 0.92052 0.99473 0.91420 1.19659 0.94700 0.91852 1.11502 1.18349 0.86475 0.84671 0.75498 1.90771 1.15483 1.87999 1.52168 1.45777 1.10848 1.04546 1.73944 1.20783 0.95197 0.81146 0.97195 0.92133 1.22049 1.02336 1.01473 0.95213 1.23453 0.99181 0.94525 0.95559 1.22141 0.91865 0.94408 0.87242 1.46437 1.56249 1.03281 1.31090 1.19439 1.23698 0.87867 1.05286 0.89825 1.25638 1.00816 0.98986 1.00754 1.69998 1.41085 1.15755 1.33448 0.85086 0.78210 0.78199 0.77884 1.21756 1.21976 1.18996 1.22691 0.99133 0.84839 0.93151 1.20926 1.01017 0.89111 0.93261 1.20103 0.89626 0.88518 1.14111 1.98366 1.72076 1.35355 1.97249 0.90734 0.90533 0.86252 0.80258 0.81477 0.74779 0.90432 0.93082 0.91791 0.87213 0.97286 0.93448 0.94263 0.91619 0.95201 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.54 9.94 -90.65 -0.90 -5.44 16 3 C 0.16 2.60 6.69 22.65 0.15 2.75 16 4 C -0.20 -2.15 9.01 22.32 0.20 -1.95 16 5 C -0.03 -0.34 9.53 22.51 0.21 -0.13 16 6 C -0.17 -3.61 5.87 -20.09 -0.12 -3.73 16 7 C 0.56 14.97 7.73 86.72 0.67 15.64 16 8 O -0.58 -20.74 16.00 -3.98 -0.06 -20.80 16 9 N -0.70 -16.01 4.90 -445.62 -2.18 -18.19 16 10 C 0.16 4.71 2.29 44.99 0.10 4.82 16 11 H 0.06 2.16 7.49 -2.38 -0.02 2.14 16 12 C -0.15 -4.01 9.46 71.98 0.68 -3.33 16 13 C -0.11 -3.57 3.35 -10.13 -0.03 -3.60 16 14 C 0.17 7.89 6.90 86.44 0.60 8.49 16 15 N -0.64 -32.64 3.70 -716.23 -2.65 -35.30 16 16 C -0.23 -13.11 10.70 84.03 0.90 -12.21 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.95 -57.66 11.39 21.65 0.25 -57.41 16 20 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C 0.13 4.80 8.38 86.48 0.72 5.52 16 25 C -0.02 -0.52 9.36 22.53 0.21 -0.31 16 26 C -0.10 -1.96 6.33 22.37 0.14 -1.81 16 27 Cl -0.06 -1.22 28.49 -2.72 -0.08 -1.30 16 28 H 0.07 0.18 7.65 -2.38 -0.02 0.17 16 29 H 0.08 0.15 7.65 -2.39 -0.02 0.13 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.18 0.66 6.28 -2.91 -0.02 0.64 16 32 H 0.17 1.14 6.39 -2.91 -0.02 1.12 16 33 H 0.41 6.50 6.62 -92.71 -0.61 5.88 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.79 7.99 -2.39 -0.02 1.77 16 37 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 39 H 0.05 2.46 7.16 -2.38 -0.02 2.44 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.14 3.40 7.64 -2.91 -0.02 3.38 16 Total: -1.00 -76.28 374.07 2.85 -73.44 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.43 Total: 9.53 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.02 Total: 7.83 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.59 Total: -110.90 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.96 Total: -26.25 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -76.28 2.85 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970855242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.079 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds