Wall clock time and date at job start Tue Mar 31 2020 20:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35650 * 117.00023 * 2 1 4 4 C 1.38675 * 120.14620 * 0.02562 * 3 2 1 5 5 C 1.38095 * 120.12511 * 179.97438 * 4 3 2 6 6 C 1.38483 * 120.41004 * 0.03834 * 5 4 3 7 7 C 1.37963 * 120.28529 * 0.02562 * 6 5 4 8 8 Cl 1.73601 * 120.06025 * 179.97438 * 7 6 5 9 9 C 1.39838 * 119.87321 * 0.24887 * 7 6 5 10 10 C 1.47466 * 120.19984 * 179.70281 * 9 7 6 11 11 O 1.21596 * 119.99525 * 90.00557 * 10 9 7 12 12 N 1.34776 * 120.00017 * 270.00222 * 10 9 7 13 13 C 1.46497 * 119.99644 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47411 * 324.99721 * 13 12 10 15 15 C 1.53008 * 109.47262 * 85.00188 * 13 12 10 16 16 C 1.53001 * 109.47032 * 205.00140 * 13 12 10 17 17 C 1.53943 * 113.74205 * 162.06394 * 16 13 12 18 18 N 1.47583 * 86.11798 * 222.04568 * 17 16 13 19 19 C 1.36935 * 134.49485 * 204.64030 * 18 17 16 20 20 H 1.08003 * 119.99922 * 182.74120 * 19 18 17 21 21 C 1.38813 * 119.99892 * 2.74817 * 19 18 17 22 22 N 1.31614 * 120.00013 * 353.40297 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 173.41138 * 21 19 18 24 24 H 1.48502 * 109.47582 * 94.96570 * 23 21 19 25 25 H 1.48504 * 109.47091 * 214.96849 * 23 21 19 26 26 H 1.48501 * 109.47303 * 334.96344 * 23 21 19 27 27 C 1.47581 * 91.01167 * 24.64092 * 18 17 16 28 28 H 1.09002 * 109.46972 * 299.99463 * 1 2 3 29 29 H 1.08995 * 109.46990 * 60.00277 * 1 2 3 30 30 H 1.08997 * 109.46729 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.93489 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.79268 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.85053 * 179.97438 * 6 5 4 34 34 H 0.96993 * 120.00039 * 359.97438 * 12 10 9 35 35 H 1.08996 * 109.47281 * 64.47832 * 15 13 12 36 36 H 1.09000 * 109.46650 * 184.48220 * 15 13 12 37 37 H 1.08997 * 109.46672 * 304.47894 * 15 13 12 38 38 H 1.09000 * 112.94438 * 293.79402 * 16 13 12 39 39 H 1.09000 * 113.77346 * 336.34680 * 17 16 13 40 40 H 1.09003 * 113.77126 * 107.74429 * 17 16 13 41 41 H 0.97004 * 120.00167 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.76836 * 221.06523 * 27 18 17 43 43 H 1.08993 * 113.87600 * 89.67630 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9199 3.6038 0.0011 6 6 3.3023 3.6857 0.0003 7 6 4.0673 2.5375 -0.0016 8 17 5.7999 2.6470 -0.0032 9 6 3.4444 1.2856 -0.0080 10 6 4.2550 0.0537 -0.0166 11 8 4.5909 -0.4603 1.0329 12 7 4.6235 -0.5022 -1.1877 13 6 5.4284 -1.7263 -1.1962 14 1 6.1218 -1.7111 -0.3553 15 6 4.5080 -2.9427 -1.0765 16 6 6.2161 -1.8096 -2.5052 17 6 7.4013 -2.7907 -2.4540 18 7 8.1585 -1.7575 -3.1870 19 6 9.2472 -1.7736 -4.0174 20 1 9.6457 -0.8470 -4.4034 21 6 9.8385 -2.9810 -4.3631 22 7 9.4372 -4.0974 -3.7932 23 14 11.2041 -3.0211 -5.6371 24 1 12.5212 -2.9773 -4.9527 25 1 11.1014 -4.2703 -6.4336 26 1 11.0752 -1.8478 -6.5382 27 6 7.2710 -0.6999 -2.6655 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2140 2.3186 0.0005 32 1 1.3288 4.5077 0.0019 33 1 3.7836 4.6525 0.0003 34 1 4.3553 -0.0924 -2.0248 35 1 3.8685 -3.0025 -1.9571 36 1 5.1104 -3.8482 -1.0027 37 1 3.8897 -2.8440 -0.1844 38 1 5.5766 -1.9366 -3.3787 39 1 7.7743 -2.9770 -1.4469 40 1 7.2398 -3.7050 -3.0250 41 1 9.8507 -4.9410 -4.0345 42 1 7.0054 0.0551 -3.4054 43 1 7.6041 -0.2707 -1.7206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970923921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:54 Heat of formation + Delta-G solvation = -20.814398 kcal Electronic energy + Delta-G solvation = -27045.786365 eV Core-core repulsion = 23118.275980 eV Total energy + Delta-G solvation = -3927.510385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71837 -40.60084 -39.53748 -38.62939 -37.33585 -36.18383 -34.17403 -32.89960 -31.30633 -31.11000 -29.33898 -28.24420 -26.65174 -25.86821 -24.99793 -23.24543 -22.83398 -21.58579 -20.89006 -19.41347 -18.80012 -18.33814 -17.66358 -17.44721 -16.86671 -16.68459 -16.42950 -16.09116 -15.85112 -15.59065 -15.30336 -14.89643 -14.87667 -14.51913 -14.35461 -14.07244 -13.43433 -13.34068 -13.24770 -13.10648 -13.00070 -12.85656 -12.82572 -12.68836 -12.40409 -12.32137 -12.12014 -12.04955 -11.87132 -11.81677 -11.60858 -11.26931 -10.94481 -10.82628 -10.08918 -9.97731 -9.37482 -8.94258 -7.91718 -5.24524 -0.14203 0.18168 0.92983 1.44853 1.46755 1.52218 1.56338 2.11138 2.27113 2.46775 2.48149 3.29177 3.36814 3.51634 3.76183 3.88490 3.94614 3.98032 4.09434 4.25367 4.27633 4.37774 4.41243 4.42371 4.46828 4.55669 4.74990 4.76797 4.81729 4.84656 4.93395 5.01238 5.05659 5.12293 5.23155 5.25285 5.28377 5.48484 5.49734 5.53096 5.62942 5.92584 6.25663 6.50564 6.91267 7.17842 7.59639 8.55992 9.25784 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017195 B = 0.002930 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.010169 B = 9553.401144 C =10557.996860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.164 3.836 4 C -0.199 4.199 5 C -0.037 4.037 6 C -0.149 4.149 7 C 0.014 3.986 8 Cl -0.065 7.065 9 C -0.185 4.185 10 C 0.578 3.422 11 O -0.575 6.575 12 N -0.695 5.695 13 C 0.162 3.838 14 H 0.059 0.941 15 C -0.147 4.147 16 C -0.108 4.108 17 C 0.173 3.827 18 N -0.641 5.641 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.980 3.020 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.266 1.266 27 C 0.129 3.871 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.010 0.990 40 H 0.048 0.952 41 H 0.249 0.751 42 H 0.059 0.941 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 16.873 6.546 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.116 3.884 4 C -0.217 4.217 5 C -0.055 4.055 6 C -0.168 4.168 7 C -0.013 4.013 8 Cl -0.036 7.036 9 C -0.190 4.190 10 C 0.364 3.636 11 O -0.454 6.454 12 N -0.345 5.345 13 C 0.057 3.943 14 H 0.077 0.923 15 C -0.206 4.206 16 C -0.128 4.128 17 C 0.047 3.953 18 N -0.368 5.368 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.191 1.191 27 C 0.004 3.996 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.191 0.809 32 H 0.200 0.800 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -24.430 16.166 7.082 30.138 hybrid contribution 1.337 -0.341 -0.609 1.509 sum -23.093 15.825 6.472 28.733 Atomic orbital electron populations 1.23492 0.75170 1.05889 1.03245 1.86087 1.24510 1.26444 1.87568 1.18910 0.89407 0.86318 0.93735 1.21701 1.02135 0.90797 1.07082 1.21531 0.93014 0.98824 0.92093 1.21277 0.94539 0.97096 1.03891 1.20863 0.85090 0.93507 1.01865 1.98430 1.10190 1.98370 1.96580 1.18973 0.92254 0.92603 1.15164 1.18112 0.78476 0.83360 0.83678 1.90765 1.56953 1.64563 1.33155 1.45894 1.53180 1.27088 1.08345 1.20799 0.92010 0.84376 0.97102 0.92300 1.22005 0.99486 0.96907 1.02161 1.23445 0.94831 0.97692 0.96830 1.22079 0.86861 0.93279 0.93069 1.46422 1.33324 1.04902 1.52106 1.19442 1.05029 0.93314 1.18961 0.90012 1.25646 1.02688 0.95055 1.02493 1.70015 1.46151 0.97954 1.45994 0.85049 0.78308 0.77237 0.78636 1.21687 1.21692 1.19056 1.22618 0.88439 0.92532 0.95981 0.90757 0.90115 0.86963 0.80868 0.80048 0.82135 0.75403 0.90730 0.91652 0.93123 0.87507 0.97255 0.93368 0.94163 0.92240 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.78 9.95 -89.65 -0.89 -7.68 16 3 C 0.16 3.28 6.70 22.84 0.15 3.44 16 4 C -0.20 -2.25 9.03 22.34 0.20 -2.05 16 5 C -0.04 -0.34 10.03 22.29 0.22 -0.11 16 6 C -0.15 -2.17 9.81 22.26 0.22 -1.95 16 7 C 0.01 0.32 6.35 22.59 0.14 0.47 16 8 Cl -0.06 -1.73 28.04 -2.72 -0.08 -1.81 16 9 C -0.19 -4.79 5.64 -19.99 -0.11 -4.91 16 10 C 0.58 18.81 5.81 86.68 0.50 19.31 16 11 O -0.57 -23.65 16.77 -4.02 -0.07 -23.72 16 12 N -0.70 -20.59 4.95 -445.76 -2.21 -22.79 16 13 C 0.16 5.48 2.29 45.00 0.10 5.59 16 14 H 0.06 2.37 7.49 -2.39 -0.02 2.35 16 15 C -0.15 -4.45 9.43 71.98 0.68 -3.77 16 16 C -0.11 -4.06 3.36 -10.14 -0.03 -4.09 16 17 C 0.17 8.55 7.02 86.48 0.61 9.16 16 18 N -0.64 -34.38 3.70 -716.77 -2.65 -37.03 16 19 C -0.24 -13.93 10.69 84.03 0.90 -13.03 16 20 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.95 -58.89 11.43 21.65 0.25 -58.64 16 23 Si 0.98 46.76 29.56 68.60 2.03 48.79 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 C 0.13 5.47 8.38 86.48 0.72 6.19 16 28 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.08 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 0.71 6.30 -2.91 -0.02 0.69 16 32 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.41 10.17 8.59 -92.71 -0.80 9.38 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.01 0.50 8.04 -2.39 -0.02 0.48 16 40 H 0.05 2.61 7.19 -2.39 -0.02 2.59 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.03 1.19 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -80.57 377.67 2.51 -78.06 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.24 Total: 12.71 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.89 Total: 12.10 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -4.61 Total: -118.46 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.96 Total: -31.40 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -80.57 2.51 -78.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970923921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.246 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds