Wall clock time and date at job start Tue Mar 31 2020 20:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35654 * 117.00203 * 2 1 4 4 C 1.38668 * 120.14636 * 0.02562 * 3 2 1 5 5 C 1.38093 * 120.12420 * 179.97438 * 4 3 2 6 6 C 1.38478 * 120.41055 * 0.02562 * 5 4 3 7 7 C 1.37968 * 120.28920 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.06431 * 179.97438 * 7 6 5 9 9 C 1.39839 * 119.86593 * 0.23291 * 7 6 5 10 10 C 1.47461 * 120.19829 * 179.74574 * 9 7 6 11 11 O 1.21607 * 120.00133 * 89.99724 * 10 9 7 12 12 N 1.34771 * 120.00245 * 269.99670 * 10 9 7 13 13 C 1.46506 * 120.00186 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47254 * 34.99685 * 13 12 10 15 15 C 1.53004 * 109.46639 * 274.99618 * 13 12 10 16 16 C 1.52996 * 109.46969 * 155.00233 * 13 12 10 17 17 C 1.53950 * 113.74073 * 278.73628 * 16 13 12 18 18 N 1.47808 * 86.03898 * 222.08776 * 17 16 13 19 19 C 1.36939 * 134.45558 * 204.64660 * 18 17 16 20 20 H 1.08008 * 119.99580 * 179.86869 * 19 18 17 21 21 C 1.38803 * 120.00104 * 359.86364 * 19 18 17 22 22 N 1.31622 * 120.00404 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00039 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46774 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47089 * 119.99824 * 23 21 19 26 26 H 1.48504 * 109.47127 * 239.99920 * 23 21 19 27 27 C 1.47583 * 91.05005 * 24.54785 * 18 17 16 28 28 H 1.08994 * 109.47768 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46538 * 300.00010 * 1 2 3 30 30 H 1.09004 * 109.47298 * 59.99453 * 1 2 3 31 31 H 1.08001 * 119.93480 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.79455 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.85493 * 179.97438 * 6 5 4 34 34 H 0.96997 * 119.99903 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.46818 * 60.00717 * 15 13 12 36 36 H 1.09003 * 109.46641 * 179.97438 * 15 13 12 37 37 H 1.08993 * 109.47352 * 300.00007 * 15 13 12 38 38 H 1.09001 * 112.95055 * 50.32670 * 16 13 12 39 39 H 1.09006 * 113.76902 * 336.35289 * 17 16 13 40 40 H 1.09005 * 113.76977 * 107.74804 * 17 16 13 41 41 H 0.96999 * 120.00669 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.76642 * 221.15027 * 27 18 17 43 43 H 1.08999 * 113.86815 * 89.76919 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3736 0.0005 5 6 1.9201 3.6037 0.0011 6 6 3.3024 3.6855 0.0005 7 6 4.0675 2.5374 -0.0011 8 17 5.8000 2.6467 -0.0024 9 6 3.4444 1.2855 -0.0071 10 6 4.2549 0.0536 -0.0145 11 8 4.5903 -0.4599 1.0356 12 7 4.6241 -0.5032 -1.1850 13 6 5.4289 -1.7273 -1.1923 14 1 5.1368 -2.3592 -0.3537 15 6 6.9100 -1.3646 -1.0660 16 6 5.1985 -2.4812 -2.5036 17 6 3.9147 -3.3309 -2.5127 18 7 4.7288 -4.3687 -3.1799 19 6 4.4481 -5.4216 -4.0092 20 1 5.2475 -6.0499 -4.3736 21 6 3.1364 -5.6814 -4.3815 22 7 2.1622 -4.9161 -3.9369 23 14 2.7535 -7.1182 -5.5123 24 1 4.0142 -7.8175 -5.8681 25 1 1.8409 -8.0633 -4.8201 26 1 2.1011 -6.6154 -6.7480 27 6 5.9649 -3.8132 -2.5956 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 0.2140 2.3186 0.0005 32 1 1.3290 4.5076 0.0019 33 1 3.7838 4.6523 0.0005 34 1 4.3569 -0.0934 -2.0226 35 1 7.0741 -0.8276 -0.1319 36 1 7.5087 -2.2755 -1.0710 37 1 7.2021 -0.7328 -1.9047 38 1 5.3118 -1.8480 -3.3835 39 1 3.5690 -3.6153 -1.5188 40 1 3.1219 -2.9224 -3.1394 41 1 1.2456 -5.0974 -4.1973 42 1 6.8061 -3.7891 -3.2885 43 1 6.2245 -4.2386 -1.6262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970923922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:56 Heat of formation + Delta-G solvation = -20.947891 kcal Electronic energy + Delta-G solvation = -27198.032910 eV Core-core repulsion = 23270.516737 eV Total energy + Delta-G solvation = -3927.516173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72012 -40.59433 -39.54880 -38.63803 -37.34000 -36.17389 -34.19258 -32.87597 -31.28476 -31.10446 -29.35561 -28.30388 -26.68064 -25.78054 -25.01275 -23.25831 -22.88458 -21.59563 -20.83909 -19.40492 -18.77259 -18.33347 -17.68016 -17.51488 -16.92486 -16.74452 -16.39972 -16.14568 -15.74285 -15.60914 -15.27623 -14.90913 -14.78745 -14.51694 -14.36158 -14.06274 -13.42677 -13.38407 -13.27285 -13.10518 -12.92866 -12.86802 -12.85024 -12.71796 -12.53420 -12.35524 -12.10737 -11.97007 -11.88935 -11.75912 -11.51755 -11.27697 -10.96891 -10.86538 -10.07612 -9.97896 -9.38504 -8.92431 -7.90059 -5.24258 -0.14595 0.17608 0.90176 1.44781 1.46237 1.51250 1.56484 2.13475 2.26448 2.46890 2.47902 3.29907 3.36248 3.55097 3.76298 3.86045 3.93461 3.97005 4.07929 4.26179 4.28299 4.32054 4.36382 4.43747 4.48374 4.57496 4.71998 4.73074 4.81276 4.84746 4.99279 5.00770 5.06216 5.11815 5.24511 5.25390 5.31553 5.45691 5.49740 5.54708 5.64742 5.92908 6.24554 6.48839 6.91554 7.16330 7.60563 8.56741 9.27010 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.003274 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.410685 B = 8550.835036 C =10019.980662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.156 3.844 4 C -0.202 4.202 5 C -0.036 4.036 6 C -0.147 4.147 7 C 0.019 3.981 8 Cl -0.056 7.056 9 C -0.187 4.187 10 C 0.578 3.422 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.160 3.840 14 H 0.057 0.943 15 C -0.148 4.148 16 C -0.110 4.110 17 C 0.172 3.828 18 N -0.643 5.643 19 C -0.236 4.236 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.132 3.868 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.408 0.592 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.000 1.000 40 H 0.041 0.959 41 H 0.248 0.752 42 H 0.067 0.933 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 23.168 7.074 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.109 3.891 4 C -0.220 4.220 5 C -0.054 4.054 6 C -0.165 4.165 7 C -0.008 4.008 8 Cl -0.027 7.027 9 C -0.192 4.192 10 C 0.364 3.636 11 O -0.454 6.454 12 N -0.348 5.348 13 C 0.055 3.945 14 H 0.076 0.924 15 C -0.206 4.206 16 C -0.129 4.129 17 C 0.046 3.954 18 N -0.370 5.370 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.216 1.216 27 C 0.006 3.994 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.244 0.756 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.433 22.355 7.612 23.619 hybrid contribution -0.701 -1.137 -0.651 1.486 sum -1.135 21.218 6.961 22.360 Atomic orbital electron populations 1.23435 0.75365 1.05441 1.03314 1.86120 1.24453 1.27038 1.87576 1.19071 0.89945 0.86155 0.93917 1.21693 1.02045 0.90998 1.07295 1.21534 0.93366 0.98444 0.92070 1.21299 0.94257 0.97267 1.03711 1.20785 0.85384 0.92995 1.01671 1.98397 1.09401 1.98319 1.96575 1.19014 0.91955 0.93049 1.15154 1.18094 0.78243 0.83558 0.83713 1.90750 1.57384 1.64277 1.33012 1.45958 1.53517 1.27020 1.08284 1.20871 0.91809 0.84720 0.97067 0.92427 1.22033 0.93836 1.02682 1.02021 1.23441 0.97468 0.95279 0.96748 1.22116 0.93697 0.86585 0.92997 1.46435 1.04556 1.33257 1.52742 1.19510 0.92958 1.04707 1.19252 0.89703 1.25646 0.95365 1.02245 1.02821 1.70037 0.99057 1.41494 1.49700 0.84997 0.77948 0.78487 0.77815 1.18872 1.22155 1.21588 1.22666 0.90576 0.89717 0.96405 0.88030 0.90091 0.90251 0.81367 0.79939 0.81516 0.75633 0.93379 0.90408 0.90734 0.87802 0.98218 0.94028 0.94331 0.91507 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -9.77 9.94 -89.70 -0.89 -10.66 16 3 C 0.16 3.93 6.70 22.84 0.15 4.08 16 4 C -0.20 -3.12 9.03 22.34 0.20 -2.91 16 5 C -0.04 -0.40 10.03 22.29 0.22 -0.18 16 6 C -0.15 -2.16 9.81 22.26 0.22 -1.94 16 7 C 0.02 0.43 6.35 22.59 0.14 0.58 16 8 Cl -0.06 -1.29 28.04 -2.72 -0.08 -1.36 16 9 C -0.19 -5.29 5.64 -19.99 -0.11 -5.40 16 10 C 0.58 20.03 5.81 86.67 0.50 20.53 16 11 O -0.57 -24.42 16.77 -4.05 -0.07 -24.48 16 12 N -0.70 -22.25 5.07 -445.76 -2.26 -24.51 16 13 C 0.16 5.41 2.38 44.99 0.11 5.52 16 14 H 0.06 2.32 7.41 -2.39 -0.02 2.30 16 15 C -0.15 -4.09 9.31 71.98 0.67 -3.42 16 16 C -0.11 -4.09 3.47 -10.13 -0.04 -4.13 16 17 C 0.17 8.58 7.08 86.44 0.61 9.19 16 18 N -0.64 -34.15 3.70 -716.04 -2.65 -36.80 16 19 C -0.24 -13.59 10.70 84.03 0.90 -12.70 16 20 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.95 -58.83 11.39 21.65 0.25 -58.59 16 23 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 C 0.13 5.34 7.64 86.49 0.66 6.00 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.03 7.66 -2.38 -0.02 1.01 16 30 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 31 H 0.17 1.55 6.30 -2.91 -0.02 1.53 16 32 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.41 11.44 8.59 -92.71 -0.80 10.65 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.99 7.52 -2.39 -0.02 1.97 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.00 0.00 7.99 -2.38 -0.02 -0.02 16 40 H 0.04 2.30 7.17 -2.38 -0.02 2.28 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -80.30 376.40 2.39 -77.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.24 Total: 16.84 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.82 Total: 13.17 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.67 Total: -119.89 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.96 Total: -35.14 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -80.30 2.39 -77.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970923922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.967 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds