Wall clock time and date at job start Tue Mar 31 2020 20:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21272 * 119.99727 * 2 1 4 4 N 1.34772 * 119.99817 * 179.97438 * 2 1 3 5 5 C 1.38907 * 119.99820 * 180.02562 * 4 2 1 6 6 N 1.29514 * 125.26982 * 180.26869 * 5 4 2 7 7 C 1.33635 * 115.66538 * 180.23092 * 6 5 4 8 8 C 1.47201 * 122.49983 * 179.80029 * 7 6 5 9 9 O 1.21644 * 119.99763 * 179.70813 * 8 7 6 10 10 N 1.34780 * 119.99845 * 359.70996 * 8 7 6 11 11 C 1.47424 * 125.64823 * 0.03890 * 10 8 7 12 12 C 1.54908 * 104.82940 * 204.09088 * 11 10 8 13 13 C 1.55153 * 101.58630 * 322.99437 * 12 11 10 14 14 H 1.09006 * 110.72087 * 277.13814 * 13 12 11 15 15 N 1.46497 * 110.72120 * 153.86300 * 13 12 11 16 16 C 1.36936 * 120.00095 * 91.47775 * 15 13 12 17 17 H 1.07999 * 119.99954 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00166 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00024 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00168 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46648 * 60.00641 * 20 18 16 22 22 H 1.48500 * 109.47400 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47299 * 300.00690 * 20 18 16 24 24 C 1.47022 * 125.64449 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.88254 * 59.55817 * 24 10 8 26 26 C 1.53003 * 109.88494 * 298.54565 * 24 10 8 27 27 C 1.34892 * 114.99779 * 359.52714 * 7 6 5 28 28 S 1.70983 * 109.19803 * 0.25067 * 27 7 6 29 29 H 1.09009 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47482 * 299.99602 * 1 2 3 31 31 H 1.09003 * 109.47528 * 60.00251 * 1 2 3 32 32 H 0.96996 * 120.00304 * 359.97438 * 4 2 1 33 33 H 1.08992 * 110.36764 * 322.93101 * 11 10 8 34 34 H 1.09001 * 110.36208 * 85.14843 * 11 10 8 35 35 H 1.09006 * 111.00041 * 81.06839 * 12 11 10 36 36 H 1.09003 * 111.00467 * 204.91623 * 12 11 10 37 37 H 0.97002 * 119.99955 * 271.47437 * 15 13 12 38 38 H 0.97003 * 120.00100 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.46713 * 61.71864 * 26 24 10 40 40 H 1.08998 * 109.47126 * 181.71763 * 26 24 10 41 41 H 1.09002 * 109.46967 * 301.72379 * 26 24 10 42 42 H 1.08001 * 125.39957 * 180.28241 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5699 -1.1672 0.0011 6 7 4.3177 -2.2246 -0.0034 7 6 5.6354 -2.0016 0.0030 8 6 6.6223 -3.0938 0.0035 9 8 7.8117 -2.8387 0.0041 10 7 6.2081 -4.3764 0.0034 11 6 4.8040 -4.8258 0.0019 12 6 4.8425 -6.2485 0.6135 13 6 6.1688 -6.8029 0.0298 14 1 6.0150 -7.1894 -0.9778 15 7 6.7273 -7.8375 0.9037 16 6 6.4050 -9.1528 0.7005 17 1 5.7393 -9.4274 -0.1044 18 6 6.9346 -10.1331 1.5282 19 7 7.7463 -9.7985 2.5088 20 14 6.4943 -11.9273 1.2514 21 1 6.9225 -12.3376 -0.1101 22 1 7.1845 -12.7681 2.2623 23 1 5.0254 -12.1024 1.3821 24 6 7.0817 -5.5589 0.0033 25 1 7.7196 -5.5485 0.8871 26 6 7.9440 -5.5687 -1.2605 27 6 5.9934 -0.7011 0.0030 28 16 4.5859 0.2696 0.0017 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6959 -2.0072 0.0013 33 1 4.1935 -4.1648 0.6169 34 1 4.4176 -4.8594 -1.0168 35 1 4.8827 -6.2048 1.7019 36 1 3.9907 -6.8407 0.2791 37 1 7.3256 -7.5908 1.6264 38 1 8.1167 -10.4836 3.0871 39 1 8.5797 -4.6834 -1.2735 40 1 8.5667 -6.4633 -1.2685 41 1 7.2999 -5.5664 -2.1399 42 1 7.0083 -0.3317 0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986459319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:39 Heat of formation + Delta-G solvation = -20.085117 kcal Electronic energy + Delta-G solvation = -26712.054222 eV Core-core repulsion = 22818.911919 eV Total energy + Delta-G solvation = -3893.142303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85635 -41.22301 -39.98865 -38.67689 -36.05328 -35.91098 -33.37759 -32.31820 -31.80879 -30.83808 -30.13194 -26.84628 -26.73696 -24.73798 -24.30571 -22.77996 -22.38055 -21.48771 -20.21481 -19.43614 -19.01966 -18.45409 -17.83315 -17.43469 -17.16556 -17.00243 -16.49374 -16.37178 -15.73755 -15.45727 -15.22911 -15.07553 -14.77887 -14.55032 -14.37748 -14.10957 -13.60609 -13.37814 -13.32909 -13.22177 -13.12464 -13.02752 -12.86926 -12.64120 -12.52290 -12.21695 -12.17383 -12.10725 -11.72527 -11.62461 -11.33058 -11.14742 -10.98753 -10.72292 -10.47638 -9.77904 -9.35815 -9.02027 -7.92691 -5.23056 -0.54432 -0.07533 0.60137 0.64531 1.49356 1.49683 1.50452 1.53179 1.59016 1.96806 2.25879 2.58633 3.16026 3.39513 3.65336 3.75187 3.77463 3.95105 4.08340 4.18832 4.19477 4.37097 4.42317 4.47858 4.51654 4.54645 4.67123 4.68772 4.80811 4.90901 5.04202 5.07558 5.15576 5.20505 5.23293 5.36907 5.45073 5.55206 5.78766 6.26902 6.40214 6.50516 6.73210 7.01277 7.33426 8.04764 8.29608 9.30704 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.002584 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.112771 B =10833.061514 C =11993.809273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.511 3.489 3 O -0.549 6.549 4 N -0.610 5.610 5 C 0.245 3.755 6 N -0.479 5.479 7 C 0.016 3.984 8 C 0.595 3.405 9 O -0.574 6.574 10 N -0.592 5.592 11 C 0.117 3.883 12 C -0.148 4.148 13 C 0.173 3.827 14 H 0.074 0.926 15 N -0.728 5.728 16 C -0.238 4.238 17 H 0.084 0.916 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.274 1.274 24 C 0.130 3.870 25 H 0.048 0.952 26 C -0.143 4.143 27 C -0.264 4.264 28 S 0.303 5.697 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.441 0.559 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.129 22.725 -7.823 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.263 5.263 5 C -0.125 4.125 6 N -0.203 5.203 7 C -0.118 4.118 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.323 5.323 11 C -0.005 4.005 12 C -0.189 4.189 13 C 0.064 3.936 14 H 0.092 0.908 15 N -0.367 5.367 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.268 4.268 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.200 1.200 24 C 0.025 3.975 25 H 0.066 0.934 26 C -0.201 4.201 27 C -0.408 4.408 28 S 0.555 5.445 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.284 0.716 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.690 24.049 -7.915 31.469 hybrid contribution 1.238 -2.306 0.568 2.678 sum -17.452 21.743 -7.348 28.833 Atomic orbital electron populations 1.21932 0.84499 1.07615 1.07305 1.22330 0.93336 0.81089 0.73158 1.90669 1.70472 1.31969 1.49475 1.43180 0.99906 1.12815 1.70376 1.24727 0.91452 0.93470 1.02873 1.67212 1.02564 1.29207 1.21335 1.19525 0.89045 0.93011 1.10255 1.17190 0.86787 0.81232 0.76524 1.90765 1.17511 1.83747 1.53445 1.48373 1.09756 1.03939 1.70273 1.22602 0.81016 0.94699 1.02151 1.23440 0.99958 0.95359 1.00145 1.21403 0.91257 0.86402 0.94581 0.90818 1.42508 1.56123 1.02573 1.35466 1.19599 1.22159 0.83929 1.11213 0.89832 1.25597 1.00513 1.02298 0.98417 1.69836 1.37444 1.33442 1.21539 0.85189 0.77735 0.79797 0.76883 1.20344 1.22706 1.20019 1.21766 0.92312 0.85091 0.98298 0.93430 1.21928 0.99721 1.01852 0.96636 1.27069 1.09039 0.97578 1.07110 1.84818 0.89619 1.04483 1.65565 0.86883 0.86565 0.86449 0.71613 0.87661 0.90133 0.92840 0.89055 0.79729 0.94110 0.92820 0.91906 0.91426 0.79159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.08 10.39 71.24 0.74 0.82 16 2 C 0.51 4.88 7.90 87.66 0.69 5.57 16 3 O -0.55 -9.56 14.61 -3.01 -0.04 -9.61 16 4 N -0.61 -6.43 5.40 -309.99 -1.67 -8.10 16 5 C 0.24 4.61 8.36 179.27 1.50 6.11 16 6 N -0.48 -11.34 7.29 -187.15 -1.36 -12.70 16 7 C 0.02 0.45 6.58 40.46 0.27 0.72 16 8 C 0.60 21.03 7.61 86.60 0.66 21.68 16 9 O -0.57 -23.55 15.68 -4.17 -0.07 -23.62 16 10 N -0.59 -20.21 3.07 -792.12 -2.43 -22.64 16 11 C 0.12 3.30 6.01 86.85 0.52 3.83 16 12 C -0.15 -4.91 6.77 31.98 0.22 -4.69 16 13 C 0.17 6.81 3.14 46.18 0.15 6.96 16 14 H 0.07 2.81 7.81 -2.38 -0.02 2.79 16 15 N -0.73 -36.49 5.22 -317.33 -1.66 -38.14 16 16 C -0.24 -12.81 9.96 84.03 0.84 -11.97 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 20 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.13 4.96 3.21 45.34 0.15 5.11 16 25 H 0.05 2.10 7.72 -2.39 -0.02 2.09 16 26 C -0.14 -5.10 9.11 71.98 0.66 -4.44 16 27 C -0.26 -6.39 10.55 67.05 0.71 -5.69 16 28 S 0.30 5.79 20.29 -56.49 -1.15 4.64 16 29 H 0.11 -0.63 7.92 -2.38 -0.02 -0.65 16 30 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.44 1.98 8.66 -92.71 -0.80 1.18 16 33 H 0.11 2.74 6.00 -2.39 -0.01 2.73 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.37 20.58 7.56 -92.71 -0.70 19.88 16 38 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.05 1.99 6.87 -2.39 -0.02 1.97 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.19 4.38 7.99 -2.91 -0.02 4.35 16 Total: -1.00 -76.49 364.23 1.06 -75.43 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.42 Total: 26.62 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 7.55 Total: 20.14 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -6.84 Total: -141.07 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.11 Total: -33.22 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.15 Total: 4.64 kcal Total: -76.49 1.06 -75.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986459319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.347 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds