Wall clock time and date at job start Tue Mar 31 2020 20:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 119.99955 * 2 1 4 4 N 1.34776 * 119.99867 * 180.02562 * 2 1 3 5 5 C 1.38903 * 119.99975 * 180.02562 * 4 2 1 6 6 N 1.29508 * 125.26924 * 179.97438 * 5 4 2 7 7 C 1.33640 * 115.66779 * 179.97438 * 6 5 4 8 8 C 1.47201 * 122.50205 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00118 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99977 * 0.02808 * 8 7 6 11 11 C 1.47424 * 125.64754 * 0.02562 * 10 8 7 12 12 C 1.54915 * 104.83339 * 155.83433 * 11 10 8 13 13 C 1.55156 * 101.57840 * 37.00557 * 12 11 10 14 14 H 1.09001 * 110.71988 * 206.13129 * 13 12 11 15 15 N 1.46502 * 110.72247 * 82.86626 * 13 12 11 16 16 C 1.36935 * 120.00282 * 89.16414 * 15 13 12 17 17 H 1.07992 * 119.99984 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99891 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47126 * 59.99906 * 20 18 16 22 22 H 1.48501 * 109.47382 * 180.02562 * 20 18 16 23 23 H 1.48512 * 109.47201 * 300.00234 * 20 18 16 24 24 C 1.47015 * 125.64814 * 179.97438 * 10 8 7 25 25 H 1.09001 * 109.88686 * 300.51206 * 24 10 8 26 26 C 1.52997 * 109.88381 * 61.67857 * 24 10 8 27 27 C 1.34888 * 114.99600 * 0.25062 * 7 6 5 28 28 S 1.70986 * 109.19812 * 359.62322 * 27 7 6 29 29 H 1.09000 * 109.46801 * 239.99839 * 1 2 3 30 30 H 1.09000 * 109.47202 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47364 * 120.00054 * 1 2 3 32 32 H 0.97000 * 120.00312 * 359.97438 * 4 2 1 33 33 H 1.08994 * 110.37294 * 36.99233 * 11 10 8 34 34 H 1.09004 * 110.36617 * 274.66737 * 11 10 8 35 35 H 1.08994 * 111.00318 * 278.93465 * 12 11 10 36 36 H 1.09004 * 111.03477 * 155.09356 * 12 11 10 37 37 H 0.97003 * 119.99675 * 269.17336 * 15 13 12 38 38 H 0.97004 * 120.00431 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.47330 * 170.78197 * 26 24 10 40 40 H 1.08995 * 109.47233 * 290.78435 * 26 24 10 41 41 H 1.09000 * 109.47202 * 50.78373 * 26 24 10 42 42 H 1.08003 * 125.40018 * 179.75581 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5699 -1.1672 0.0000 6 7 4.3177 -2.2246 0.0001 7 6 5.6354 -2.0017 0.0001 8 6 6.6223 -3.0939 0.0007 9 8 7.8117 -2.8389 0.0012 10 7 6.2081 -4.3764 0.0007 11 6 4.8040 -4.8259 -0.0004 12 6 4.8434 -6.2482 -0.6130 13 6 6.1688 -6.8029 -0.0274 14 1 6.5854 -7.5723 -0.6775 15 7 5.9599 -7.3234 1.3260 16 6 5.5967 -8.6311 1.5082 17 1 5.4648 -9.2789 0.6543 18 6 5.3982 -9.1240 2.7906 19 7 5.5586 -8.3344 3.8313 20 14 4.9036 -10.9080 3.0393 21 1 5.9502 -11.7956 2.4717 22 1 4.7548 -11.1828 4.4910 23 1 3.6119 -11.1639 2.3526 24 6 7.0816 -5.5589 0.0007 25 1 7.7206 -5.5479 -0.8823 26 6 7.9398 -5.5719 1.2673 27 6 5.9935 -0.7013 0.0054 28 16 4.5860 0.2695 -0.0001 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6959 -2.0073 -0.0005 33 1 4.1944 -4.1645 -0.6159 34 1 4.4165 -4.8620 1.0178 35 1 4.8854 -6.2038 -1.7013 36 1 3.9911 -6.8410 -0.2808 37 1 6.0786 -6.7416 2.0930 38 1 5.4203 -8.6789 4.7275 39 1 8.4622 -6.5256 1.3425 40 1 8.6674 -4.7617 1.2215 41 1 7.3011 -5.4377 2.1403 42 1 7.0083 -0.3318 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986459321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:45 Heat of formation + Delta-G solvation = 8.613458 kcal Electronic energy + Delta-G solvation = -27100.779010 eV Core-core repulsion = 23208.881170 eV Total energy + Delta-G solvation = -3891.897840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86039 -40.24688 -38.84339 -37.25686 -35.27585 -33.90552 -31.57863 -31.15396 -30.69464 -29.46661 -28.85166 -25.56807 -25.08682 -23.51327 -23.12551 -21.91889 -21.24690 -19.52722 -19.03241 -18.03418 -17.60893 -17.24939 -17.10703 -16.36530 -16.03506 -15.81135 -15.12404 -14.81184 -14.54618 -14.29405 -13.83315 -13.67237 -13.44918 -13.22505 -13.14118 -12.88757 -12.77171 -12.55426 -12.20963 -12.02639 -11.69638 -11.32701 -11.22427 -10.96924 -10.91063 -10.76385 -10.57562 -10.55920 -10.25314 -10.10317 -9.80445 -9.61346 -9.59059 -9.51813 -8.91301 -8.55940 -8.14097 -6.99345 -5.79267 -3.08573 0.43350 0.81717 1.59591 1.59794 2.20720 2.29603 3.37696 3.41948 3.46825 3.47663 3.55793 4.06392 4.29802 4.56339 4.68187 4.77828 4.99115 5.17304 5.24734 5.27535 5.34593 5.45992 5.55611 5.66469 5.72054 5.83646 5.88467 5.99964 6.15171 6.34894 6.43629 6.44758 6.51510 6.63438 6.67632 6.85506 6.92788 7.04856 7.29408 7.36522 7.67674 7.90517 8.38694 8.43801 9.50407 10.06774 10.42216 11.42910 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.003054 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.135378 B = 9166.212882 C =10492.065959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.512 3.488 3 O -0.512 6.512 4 N -0.621 5.621 5 C 0.245 3.755 6 N -0.465 5.465 7 C 0.040 3.960 8 C 0.600 3.400 9 O -0.543 6.543 10 N -0.588 5.588 11 C 0.112 3.888 12 C -0.163 4.163 13 C 0.172 3.828 14 H 0.068 0.932 15 N -0.714 5.714 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.126 3.874 25 H 0.072 0.928 26 C -0.147 4.147 27 C -0.263 4.263 28 S 0.262 5.738 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.428 0.572 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 17.906 -10.063 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.386 6.386 4 N -0.272 5.272 5 C -0.124 4.124 6 N -0.188 5.188 7 C -0.094 4.094 8 C 0.386 3.614 9 O -0.422 6.422 10 N -0.320 5.320 11 C -0.010 4.010 12 C -0.204 4.204 13 C 0.060 3.940 14 H 0.086 0.914 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C 0.022 3.978 25 H 0.090 0.910 26 C -0.205 4.205 27 C -0.406 4.406 28 S 0.514 5.486 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.267 0.733 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.454 19.225 -10.030 23.655 hybrid contribution -0.004 -2.120 0.554 2.191 sum -9.457 17.104 -9.475 21.721 Atomic orbital electron populations 1.21896 0.88549 1.06707 1.05450 1.21345 0.91712 0.82087 0.74908 1.90687 1.69666 1.30691 1.47591 1.42870 1.01598 1.11620 1.71130 1.24460 0.89861 0.93729 1.04312 1.67331 1.03377 1.28310 1.19805 1.19887 0.88582 0.93571 1.07386 1.16710 0.86483 0.80791 0.77460 1.90783 1.15867 1.83267 1.52256 1.48424 1.09340 1.04254 1.69934 1.22485 0.81607 0.95274 1.01664 1.23563 1.02434 0.95783 0.98665 1.21206 0.91672 0.91783 0.89330 0.91426 1.42524 1.81938 1.10167 1.00950 1.19191 1.38894 0.87137 0.92131 0.91114 1.24737 1.02471 0.97944 0.95514 1.69655 1.55647 1.34855 0.97700 0.86275 0.78350 0.84874 0.76677 1.21264 1.21780 1.21305 1.22041 0.92286 0.84646 0.98797 0.91024 1.21905 0.99527 1.01995 0.97112 1.26858 1.07602 0.97612 1.08509 1.84794 0.91350 1.05739 1.66742 0.88236 0.87833 0.88317 0.73290 0.89403 0.91495 0.92367 0.89601 0.77546 0.93425 0.91065 0.92828 0.91980 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.32 36.01 0.37 -0.07 16 2 C 0.51 3.72 7.90 -10.98 -0.09 3.63 16 3 O -0.51 -5.48 14.59 5.56 0.08 -5.40 16 4 N -0.62 -4.94 5.40 -11.91 -0.06 -5.00 16 5 C 0.25 2.86 8.36 -87.54 -0.73 2.13 16 6 N -0.47 -6.50 7.29 -10.51 -0.08 -6.58 16 7 C 0.04 0.62 6.58 -84.63 -0.56 0.07 16 8 C 0.60 10.96 7.61 -12.62 -0.10 10.87 16 9 O -0.54 -11.01 15.83 5.24 0.08 -10.93 16 10 N -0.59 -10.57 3.06 -164.36 -0.50 -11.07 16 11 C 0.11 1.88 5.99 -2.53 -0.02 1.86 16 12 C -0.16 -2.78 6.77 -24.58 -0.17 -2.94 16 13 C 0.17 3.36 3.47 -66.10 -0.23 3.13 16 14 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 15 N -0.71 -17.19 4.59 -51.65 -0.24 -17.43 16 16 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.34 3.43 -66.96 -0.23 2.11 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 26 C -0.15 -2.92 8.13 37.16 0.30 -2.61 16 27 C -0.26 -3.47 10.55 29.54 0.31 -3.16 16 28 S 0.26 2.94 20.29 -107.50 -2.18 0.76 16 29 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.43 2.31 8.82 -40.82 -0.36 1.95 16 33 H 0.09 1.33 5.99 -51.93 -0.31 1.02 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.39 10.13 5.75 -40.82 -0.23 9.90 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 40 H 0.05 1.05 7.14 -51.93 -0.37 0.67 16 41 H 0.06 1.35 6.64 -51.93 -0.34 1.01 16 42 H 0.19 2.28 7.99 -52.48 -0.42 1.86 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -33.93 361.24 -8.51 -42.44 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.39 Total: 9.71 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.37 Total: 8.02 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.16 Total: -66.89 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.16 Total: -16.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.18 Total: 0.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.93 -8.51 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986459321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.058 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds