Wall clock time and date at job start Tue Mar 31 2020 20:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35716 * 117.00122 * 2 1 4 4 C 1.39058 * 119.90182 * 180.02562 * 3 2 1 5 5 C 1.37638 * 120.12661 * 180.02562 * 4 3 2 6 6 C 1.39780 * 119.92470 * 359.97438 * 5 4 3 7 7 C 1.47524 * 120.10341 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00140 * 221.09185 * 7 6 5 9 9 N 1.34783 * 120.00011 * 41.08464 * 7 6 5 10 10 C 1.47423 * 125.64702 * 355.41232 * 9 7 6 11 11 C 1.54910 * 104.83336 * 155.82903 * 10 9 7 12 12 C 1.55157 * 101.57775 * 37.00622 * 11 10 9 13 13 H 1.09007 * 110.71840 * 205.95748 * 12 11 10 14 14 N 1.46500 * 110.71829 * 82.86580 * 12 11 10 15 15 C 1.36932 * 120.00142 * 88.84072 * 14 12 11 16 16 H 1.08001 * 120.00235 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00188 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99771 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00249 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47205 * 269.99681 * 19 17 15 21 21 H 1.48505 * 109.47062 * 30.00051 * 19 17 15 22 22 H 1.48507 * 109.47232 * 149.99620 * 19 17 15 23 23 C 1.47482 * 125.59185 * 175.33932 * 9 7 6 24 24 H 1.09004 * 109.96360 * 300.40850 * 23 9 7 25 25 C 1.52996 * 110.03401 * 61.72518 * 23 9 7 26 26 C 1.39859 * 119.79990 * 0.24884 * 6 5 4 27 27 Cl 1.73597 * 120.06327 * 179.72324 * 26 6 5 28 28 C 1.37898 * 119.87083 * 359.49886 * 26 6 5 29 29 H 1.08997 * 109.46909 * 299.99479 * 1 2 3 30 30 H 1.09000 * 109.47181 * 59.99957 * 1 2 3 31 31 H 1.08993 * 109.46919 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.93431 * 0.04051 * 4 3 2 33 33 H 1.08003 * 120.04072 * 180.02562 * 5 4 3 34 34 H 1.09002 * 110.36892 * 36.98812 * 10 9 7 35 35 H 1.09000 * 110.36773 * 274.66599 * 10 9 7 36 36 H 1.08997 * 111.00157 * 278.93762 * 11 10 9 37 37 H 1.08990 * 111.00501 * 155.08291 * 11 10 9 38 38 H 0.97005 * 120.00080 * 268.83748 * 14 12 11 39 39 H 0.96998 * 119.99486 * 180.02562 * 18 17 15 40 40 H 1.09010 * 109.47378 * 177.60808 * 25 23 9 41 41 H 1.09000 * 109.47674 * 297.60765 * 25 23 9 42 42 H 1.09003 * 109.47112 * 57.61191 * 25 23 9 43 43 H 1.08000 * 119.95808 * 180.24791 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4339 1.2796 -0.0005 5 6 4.0636 2.5035 0.0000 6 6 3.3054 3.6778 0.0005 7 6 3.9763 4.9917 0.0017 8 8 3.5457 5.8935 0.6942 9 7 5.0666 5.1923 -0.7649 10 6 5.7483 4.1661 -1.5745 11 6 6.4782 4.9591 -2.6872 12 6 6.9350 6.2267 -1.9178 13 1 7.0511 7.0701 -2.5985 14 7 8.1827 5.9719 -1.1936 15 6 9.3873 6.1812 -1.8103 16 1 9.4175 6.5338 -2.8307 17 6 10.5696 5.9393 -1.1244 18 7 10.5328 5.5091 0.1190 19 14 12.2128 6.2241 -1.9659 20 1 12.6431 4.9766 -2.6467 21 1 12.0741 7.3120 -2.9673 22 1 13.2275 6.6105 -0.9527 23 6 5.7733 6.4758 -0.9330 24 1 5.0942 7.2238 -1.3424 25 6 6.3247 6.9507 0.4129 26 6 1.9088 3.6034 0.0058 27 17 0.9605 5.0574 0.0138 28 6 1.2866 2.3728 0.0000 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0196 0.3721 -0.0016 33 1 5.1424 2.5565 -0.0008 34 1 5.0206 3.4821 -2.0112 35 1 6.4672 3.6182 -0.9654 36 1 5.7941 5.2180 -3.4953 37 1 7.3350 4.4021 -3.0661 38 1 8.1557 5.6549 -0.2772 39 1 11.3590 5.3404 0.5984 40 1 6.8811 7.8774 0.2711 41 1 5.4991 7.1246 1.1030 42 1 6.9871 6.1885 0.8234 43 1 0.2082 2.3137 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987192287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:00 Heat of formation + Delta-G solvation = -40.292602 kcal Electronic energy + Delta-G solvation = -27285.296797 eV Core-core repulsion = 23356.941774 eV Total energy + Delta-G solvation = -3928.355023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75767 -40.86182 -39.13358 -38.16175 -37.37863 -35.72438 -33.51292 -32.32404 -32.09570 -31.57768 -30.19801 -28.33337 -26.78672 -25.57530 -24.90818 -23.75680 -23.09617 -21.35495 -20.19225 -19.38260 -19.25905 -18.30793 -17.62738 -17.50409 -16.78021 -16.54207 -16.23533 -16.02812 -15.66862 -15.45425 -15.19456 -14.80931 -14.69070 -14.55171 -14.35794 -14.05701 -13.81495 -13.73617 -13.21878 -12.97579 -12.96772 -12.87190 -12.82273 -12.53297 -12.39307 -12.23303 -12.11234 -12.09635 -12.02656 -11.82758 -11.59485 -11.43183 -10.89423 -10.82117 -10.07892 -9.68017 -9.36790 -8.96552 -7.89184 -5.17039 -0.25227 0.01064 0.97123 1.51903 1.52639 1.60579 1.67311 1.92959 2.19572 2.49203 2.60099 3.36214 3.46063 3.57735 3.76645 3.78152 3.90196 3.98246 4.06341 4.26067 4.27565 4.29911 4.34701 4.39501 4.42225 4.47901 4.60677 4.68707 4.75721 4.83135 4.88014 4.95320 4.96184 5.07855 5.10373 5.21763 5.34809 5.35978 5.41099 5.48004 5.60203 6.20139 6.32276 6.53646 7.10809 7.39955 8.13474 8.37579 9.34053 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002950 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.288479 B = 9490.374800 C =10438.251637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.316 6.316 3 C 0.166 3.834 4 C -0.149 4.149 5 C -0.037 4.037 6 C -0.175 4.175 7 C 0.569 3.431 8 O -0.559 6.559 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.147 4.147 12 C 0.164 3.836 13 H 0.073 0.927 14 N -0.724 5.724 15 C -0.232 4.232 16 H 0.080 0.920 17 C -0.073 4.073 18 N -0.969 5.969 19 Si 0.968 3.032 20 H -0.288 1.288 21 H -0.270 1.270 22 H -0.303 1.303 23 C 0.134 3.866 24 H 0.082 0.918 25 C -0.136 4.136 26 C 0.038 3.962 27 Cl -0.053 7.053 28 C -0.205 4.205 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.375 -11.670 -3.765 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.228 6.228 3 C 0.118 3.882 4 C -0.168 4.168 5 C -0.055 4.055 6 C -0.179 4.179 7 C 0.359 3.641 8 O -0.438 6.438 9 N -0.335 5.335 10 C -0.015 4.015 11 C -0.188 4.188 12 C 0.054 3.946 13 H 0.091 0.909 14 N -0.366 5.366 15 C -0.364 4.364 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.620 5.620 19 Si 0.798 3.202 20 H -0.215 1.215 21 H -0.195 1.195 22 H -0.230 1.230 23 C 0.031 3.969 24 H 0.100 0.900 25 C -0.194 4.194 26 C 0.010 3.990 27 Cl -0.024 7.024 28 C -0.225 4.225 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.182 0.818 33 H 0.169 0.831 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.212 0.788 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.547 -11.199 -3.486 25.416 hybrid contribution 0.953 0.521 0.333 1.136 sum -21.594 -10.679 -3.153 24.295 Atomic orbital electron populations 1.23506 0.75808 1.06293 1.02716 1.86088 1.23964 1.25391 1.87380 1.19143 0.92282 0.84256 0.92477 1.20694 0.91643 0.99054 1.05380 1.21358 1.00836 0.89817 0.93529 1.19605 0.92507 0.93861 1.11974 1.18002 0.79303 0.87735 0.79094 1.90769 1.65709 1.45351 1.42005 1.48654 1.27180 1.11886 1.45756 1.22501 0.95658 0.91000 0.92389 1.23375 1.00163 0.98185 0.97039 1.21399 0.84563 0.96593 0.92035 0.90942 1.42692 1.00284 1.79203 1.14387 1.19607 0.84689 1.35207 0.96902 0.90188 1.25461 1.00900 1.03273 0.96878 1.69818 1.26714 1.53989 1.11429 0.85219 0.80130 0.77767 0.77083 1.21531 1.19530 1.23012 1.21928 0.93246 0.85476 0.96271 0.90043 1.21755 0.99692 1.00941 0.97019 1.20732 0.90163 0.88651 0.99445 1.98402 1.71310 1.36338 1.96335 1.21190 1.02048 0.89290 1.09938 0.91426 0.91178 0.85603 0.81790 0.83134 0.88577 0.91892 0.89271 0.90290 0.78782 0.94275 0.92261 0.92959 0.93981 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -4.68 10.48 -90.37 -0.95 -5.62 16 3 C 0.17 2.93 6.69 22.63 0.15 3.09 16 4 C -0.15 -2.73 9.97 22.32 0.22 -2.50 16 5 C -0.04 -0.82 7.95 22.50 0.18 -0.64 16 6 C -0.18 -4.79 5.40 -20.06 -0.11 -4.90 16 7 C 0.57 19.09 6.96 86.69 0.60 19.70 16 8 O -0.56 -22.08 14.27 -4.00 -0.06 -22.14 16 9 N -0.60 -19.35 3.08 -790.69 -2.44 -21.78 16 10 C 0.11 2.97 5.21 86.86 0.45 3.43 16 11 C -0.15 -4.36 6.77 31.99 0.22 -4.14 16 12 C 0.16 5.97 3.46 46.18 0.16 6.13 16 13 H 0.07 2.59 8.11 -2.38 -0.02 2.57 16 14 N -0.72 -33.74 4.61 -317.33 -1.46 -35.20 16 15 C -0.23 -12.02 9.97 84.03 0.84 -11.18 16 16 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 19 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 C 0.13 4.69 3.47 45.25 0.16 4.85 16 24 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 25 C -0.14 -5.32 8.47 71.98 0.61 -4.71 16 26 C 0.04 0.94 6.33 22.58 0.14 1.08 16 27 Cl -0.05 -1.41 26.85 -2.72 -0.07 -1.48 16 28 C -0.21 -3.79 8.80 22.35 0.20 -3.60 16 29 H 0.07 0.40 7.65 -2.39 -0.02 0.39 16 30 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 31 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 3.28 5.93 -2.91 -0.02 3.27 16 34 H 0.10 2.16 6.77 -2.39 -0.02 2.14 16 35 H 0.06 1.91 7.31 -2.39 -0.02 1.89 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.38 19.32 5.58 -92.70 -0.52 18.81 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.05 2.07 6.80 -2.39 -0.02 2.06 16 42 H 0.04 1.83 6.21 -2.39 -0.01 1.82 16 43 H 0.17 2.17 6.27 -2.91 -0.02 2.15 16 Total: -1.00 -67.54 361.15 3.27 -64.27 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.53 Total: 28.23 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.40 Total: 4.24 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.61 Total: -114.24 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.00 Total: -27.76 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.48 kcal Total: -67.54 3.27 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987192287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.975 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds