Wall clock time and date at job start Tue Mar 31 2020 20:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87466 * 2 1 4 4 C 1.54325 * 109.88622 * 238.82289 * 2 1 3 5 5 H 1.09005 * 110.71686 * 336.74884 * 4 2 1 6 6 N 1.46494 * 110.72176 * 100.02308 * 4 2 1 7 7 C 1.36934 * 120.00152 * 205.00129 * 6 4 2 8 8 H 1.08001 * 120.00042 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00155 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00321 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99953 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47286 * 90.00029 * 11 9 7 13 13 H 1.48501 * 109.47576 * 210.00545 * 11 9 7 14 14 H 1.48505 * 109.47449 * 330.00335 * 11 9 7 15 15 C 1.55155 * 102.94238 * 218.38954 * 4 2 1 16 16 C 1.54698 * 101.67947 * 35.33409 * 15 4 2 17 17 N 1.47025 * 109.88218 * 121.01038 * 2 1 3 18 18 C 1.34777 * 125.65283 * 298.32530 * 17 2 1 19 19 O 1.21288 * 119.99585 * 359.97438 * 18 17 2 20 20 C 1.50694 * 120.00531 * 180.02562 * 18 17 2 21 21 O 1.42893 * 109.47628 * 179.97438 * 20 18 17 22 22 C 1.35917 * 117.00324 * 179.97438 * 21 20 18 23 23 C 1.38728 * 120.04370 * 0.25550 * 22 21 20 24 24 C 1.38137 * 119.95782 * 180.25500 * 23 22 21 25 25 C 1.38365 * 120.04335 * 359.48598 * 24 23 22 26 26 Cl 1.73603 * 119.96019 * 180.23690 * 25 24 23 27 27 C 1.38371 * 120.08418 * 0.25849 * 25 24 23 28 28 C 1.38143 * 120.04298 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.47169 * 300.43657 * 1 2 3 30 30 H 1.08996 * 109.47464 * 60.44118 * 1 2 3 31 31 H 1.09002 * 109.46634 * 180.43822 * 1 2 3 32 32 H 0.97010 * 120.00032 * 25.00176 * 6 4 2 33 33 H 0.96991 * 120.00348 * 180.02562 * 10 9 7 34 34 H 1.08995 * 111.00436 * 153.57164 * 15 4 2 35 35 H 1.09000 * 111.00194 * 277.38824 * 15 4 2 36 36 H 1.08998 * 110.39299 * 204.36699 * 16 15 4 37 37 H 1.08992 * 110.23291 * 82.11150 * 16 15 4 38 38 H 1.08997 * 109.47108 * 59.99385 * 20 18 17 39 39 H 1.09009 * 109.46344 * 300.00019 * 20 18 17 40 40 H 1.07998 * 120.01741 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.98114 * 179.77139 * 24 23 22 42 42 H 1.08001 * 119.97793 * 180.02562 * 27 25 24 43 43 H 1.07998 * 120.01960 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 -1.2416 5 1 1.3052 -1.4483 -1.6161 6 7 2.4555 0.1928 -2.2877 7 6 2.4583 -0.1997 -3.5996 8 1 2.1648 -1.2051 -3.8632 9 6 2.8384 0.6947 -4.5909 10 7 2.8406 0.3177 -5.8519 11 14 3.3453 2.4338 -4.1352 12 1 4.8085 2.4735 -3.8850 13 1 3.0085 3.3558 -5.2496 14 1 2.6219 2.8551 -2.9086 15 6 3.2877 -1.5152 -0.6902 16 6 2.8191 -1.8752 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.8085 -0.3577 2.4663 19 8 1.1458 0.6266 2.7171 20 6 2.3851 -1.1835 3.5872 21 8 2.0146 -0.6086 4.8418 22 6 2.4567 -1.2368 5.9631 23 6 3.2357 -2.3799 5.8574 24 6 3.6796 -3.0200 6.9982 25 6 3.3568 -2.5157 8.2456 26 17 3.9211 -3.3183 9.6778 27 6 2.5845 -1.3726 8.3530 28 6 2.1337 -0.7331 7.2146 29 1 -0.3633 0.5206 0.8860 30 1 -0.3634 0.5069 -0.8939 31 1 -0.3633 -1.0277 0.0079 32 1 2.7188 1.0960 -2.0511 33 1 3.1065 0.9425 -6.5445 34 1 3.4852 -2.4128 -1.2760 35 1 4.1656 -0.8698 -0.6597 36 1 3.6777 -2.0243 1.3943 37 1 2.1972 -2.7700 0.7182 38 1 3.4717 -1.2019 3.5031 39 1 1.9986 -2.2008 3.5249 40 1 3.4916 -2.7712 4.8839 41 1 4.2830 -3.9120 6.9164 42 1 2.3339 -0.9803 9.3275 43 1 1.5305 0.1588 7.2988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987449235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:14 Heat of formation + Delta-G solvation = -29.451545 kcal Electronic energy + Delta-G solvation = -26110.082491 eV Core-core repulsion = 22182.197572 eV Total energy + Delta-G solvation = -3927.884919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85275 -39.98154 -38.25426 -37.36509 -36.50558 -34.38998 -32.08769 -31.66113 -31.18527 -30.49503 -29.83993 -28.00496 -25.47998 -23.63260 -22.98770 -22.76520 -22.22287 -20.41410 -19.19260 -18.87080 -17.69739 -17.08207 -16.96834 -16.83282 -16.33725 -15.87555 -15.02844 -14.94133 -14.64718 -14.14850 -14.05083 -14.00776 -13.63123 -13.58710 -13.41738 -12.80658 -12.77843 -12.63539 -12.46406 -12.26013 -12.10891 -11.91193 -11.74814 -11.40664 -11.31198 -11.18802 -11.10972 -10.97002 -10.74277 -10.45176 -10.15248 -9.82770 -9.68631 -9.60633 -9.04714 -8.67128 -8.57827 -7.42279 -5.88152 -3.26092 0.73330 0.77320 1.75307 2.21353 2.45737 3.14826 3.27445 3.31330 3.34892 3.40303 4.12419 4.28588 4.34788 4.49566 4.53867 4.64567 4.69472 4.78347 4.86672 4.96724 5.02506 5.05992 5.27550 5.37509 5.42606 5.48276 5.50261 5.55823 5.70184 5.74319 5.76475 5.78283 5.89517 6.06526 6.08570 6.24142 6.39860 6.43271 6.48013 6.68638 6.85689 7.44756 7.84836 8.04637 8.29994 9.06197 9.78832 9.96504 11.29328 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.001924 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.341241 B =14551.405483 C =14856.623574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 H 0.076 0.924 4 C 0.182 3.818 5 H 0.078 0.922 6 N -0.737 5.737 7 C -0.251 4.251 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.156 4.156 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.529 3.471 19 O -0.519 6.519 20 C 0.044 3.956 21 O -0.285 6.285 22 C 0.139 3.861 23 C -0.200 4.200 24 C -0.067 4.067 25 C -0.076 4.076 26 Cl -0.074 7.074 27 C -0.069 4.069 28 C -0.137 4.137 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -8.660 27.762 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 H 0.094 0.906 4 C 0.071 3.929 5 H 0.096 0.904 6 N -0.379 5.379 7 C -0.380 4.380 8 H 0.111 0.889 9 C -0.186 4.186 10 N -0.575 5.575 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.197 4.197 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.394 6.394 20 C -0.034 4.034 21 O -0.197 6.197 22 C 0.093 3.907 23 C -0.219 4.219 24 C -0.086 4.086 25 C -0.103 4.103 26 Cl -0.045 7.045 27 C -0.088 4.088 28 C -0.156 4.156 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.871 -8.102 27.814 28.983 hybrid contribution 0.738 0.884 0.188 1.167 sum 1.609 -7.218 28.003 28.963 Atomic orbital electron populations 1.22066 0.94445 1.02024 1.02929 1.22025 0.94883 0.96743 0.84139 0.90602 1.21213 0.93909 0.91352 0.86454 0.90397 1.42697 1.80801 1.11037 1.03360 1.19020 1.39189 0.99040 0.80767 0.88948 1.24666 1.01143 0.97773 0.95067 1.69687 1.53583 1.35348 0.98908 0.86596 0.78677 0.85998 0.77524 1.20980 1.21574 1.20215 1.23512 1.01096 1.02222 0.92846 1.22457 0.94558 0.88414 0.97560 1.48457 1.52272 1.29159 1.04409 1.19474 0.81391 0.85479 0.82114 1.90747 1.39002 1.26753 1.82916 1.22531 1.01122 0.97615 0.82152 1.86184 1.70887 1.50899 1.11682 1.19155 0.93177 0.91408 0.86989 1.21258 1.03317 0.97533 0.99779 1.20843 0.98288 0.99491 0.89987 1.20799 1.04024 0.97457 0.87989 1.98369 1.88349 1.79382 1.38387 1.20880 0.95564 0.93301 0.99033 1.20429 1.03976 1.02439 0.88713 0.91875 0.90907 0.92709 0.80319 0.92876 0.89799 0.90650 0.91205 0.91082 0.88826 0.88780 0.84370 0.84530 0.84158 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 37.16 0.34 -2.05 16 2 C 0.13 1.98 3.21 -66.95 -0.21 1.77 16 3 H 0.08 1.34 7.72 -51.93 -0.40 0.94 16 4 C 0.18 3.11 3.14 -66.10 -0.21 2.90 16 5 H 0.08 1.35 7.80 -51.93 -0.41 0.95 16 6 N -0.74 -16.08 5.03 -51.65 -0.26 -16.34 16 7 C -0.25 -6.59 10.44 -15.06 -0.16 -6.74 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 10 N -0.93 -27.99 13.97 55.49 0.78 -27.22 16 11 Si 0.88 21.34 27.73 -169.99 -4.71 16.63 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 15 C -0.16 -2.16 6.76 -24.70 -0.17 -2.33 16 16 C 0.09 0.97 6.68 -2.64 -0.02 0.95 16 17 N -0.61 -8.05 3.07 -163.15 -0.50 -8.55 16 18 C 0.53 7.31 7.72 -10.99 -0.08 7.23 16 19 O -0.52 -9.33 15.54 -14.36 -0.22 -9.56 16 20 C 0.04 0.43 4.23 36.00 0.15 0.58 16 21 O -0.28 -3.34 9.67 -39.39 -0.38 -3.72 16 22 C 0.14 1.33 6.69 -39.22 -0.26 1.07 16 23 C -0.20 -1.52 9.04 -39.44 -0.36 -1.88 16 24 C -0.07 -0.49 9.82 -39.57 -0.39 -0.88 16 25 C -0.08 -0.60 6.32 -39.49 -0.25 -0.84 16 26 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 27 C -0.07 -0.52 9.82 -39.57 -0.39 -0.91 16 28 C -0.14 -1.18 9.99 -39.44 -0.39 -1.57 16 29 H 0.06 1.01 6.89 -51.93 -0.36 0.65 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.36 7.99 5.43 -40.82 -0.22 7.77 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.69 7.35 -51.93 -0.38 0.31 16 39 H 0.09 0.66 7.67 -51.92 -0.40 0.27 16 40 H 0.14 0.76 6.30 -52.49 -0.33 0.42 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -32.47 371.04 -9.56 -42.03 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.86 Total: 5.71 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.49 Total: -2.53 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.02 Total: -52.10 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.60 Total: -13.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -9.56 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987449235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.580 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds