Wall clock time and date at job start Tue Mar 31 2020 20:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.00187 * 2 1 4 4 C 1.54335 * 109.78076 * 121.16382 * 2 1 3 5 5 H 1.09001 * 110.67400 * 215.88215 * 4 2 1 6 6 N 1.46507 * 110.84498 * 339.03245 * 4 2 1 7 7 C 1.36938 * 119.99553 * 200.14651 * 6 4 2 8 8 H 1.08000 * 120.00245 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99812 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00083 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46994 * 60.00193 * 11 9 7 13 13 H 1.48501 * 109.47540 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47010 * 300.00534 * 11 9 7 15 15 C 1.55159 * 103.02387 * 97.49594 * 4 2 1 16 16 C 1.54905 * 101.57736 * 35.30750 * 15 4 2 17 17 N 1.47025 * 109.88813 * 238.90222 * 2 1 3 18 18 C 1.34772 * 125.64589 * 59.55643 * 17 2 1 19 19 O 1.21279 * 120.00083 * 359.72277 * 18 17 2 20 20 C 1.50704 * 120.00035 * 179.72138 * 18 17 2 21 21 O 1.42901 * 109.46941 * 180.02562 * 20 18 17 22 22 C 1.35901 * 116.99552 * 180.02562 * 21 20 18 23 23 C 1.38765 * 120.04729 * 179.97438 * 22 21 20 24 24 C 1.38121 * 119.97109 * 180.02562 * 23 22 21 25 25 C 1.38266 * 120.07013 * 0.02562 * 24 23 22 26 26 C 1.38359 * 120.09755 * 359.95514 * 25 24 23 27 27 Cl 1.73602 * 119.98881 * 180.02562 * 26 25 24 28 28 C 1.38287 * 120.02796 * 0.04312 * 26 25 24 29 29 H 1.09005 * 109.47288 * 179.64042 * 1 2 3 30 30 H 1.08998 * 109.47573 * 299.64718 * 1 2 3 31 31 H 1.09004 * 109.47058 * 59.64615 * 1 2 3 32 32 H 0.96990 * 120.00176 * 20.14179 * 6 4 2 33 33 H 0.96999 * 120.00260 * 180.02562 * 10 9 7 34 34 H 1.08999 * 111.00097 * 277.23760 * 15 4 2 35 35 H 1.08998 * 111.03672 * 153.39929 * 15 4 2 36 36 H 1.09004 * 110.36725 * 204.14734 * 16 15 4 37 37 H 1.09007 * 110.36301 * 81.82983 * 16 15 4 38 38 H 1.08996 * 109.47043 * 60.00354 * 20 18 17 39 39 H 1.09001 * 109.46670 * 299.99987 * 20 18 17 40 40 H 1.08001 * 120.01503 * 359.74963 * 23 22 21 41 41 H 1.08002 * 119.96750 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.95242 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.03035 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9600 -0.2827 1.6226 6 7 1.0256 -0.8101 2.2863 7 6 1.3837 -1.0486 3.5863 8 1 2.4229 -1.1932 3.8424 9 6 0.4110 -1.1036 4.5752 10 7 -0.8554 -0.9269 4.2632 11 14 0.8993 -1.4297 6.3485 12 1 1.8223 -0.3627 6.8120 13 1 -0.3154 -1.4396 7.2027 14 1 1.5793 -2.7467 6.4404 15 6 2.3561 -2.1697 0.6916 16 6 2.8612 -1.8466 -0.7367 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3846 -2.4656 19 8 1.0748 0.5726 -2.7180 20 6 2.3614 -1.2055 -3.5854 21 8 1.9507 -0.6605 -4.8409 22 6 2.3954 -1.2884 -5.9611 23 6 2.0346 -0.8129 -7.2138 24 6 2.4870 -1.4526 -8.3513 25 6 3.2986 -2.5668 -8.2431 26 6 3.6604 -3.0431 -6.9955 27 17 4.6801 -4.4418 -6.8630 28 6 3.2098 -2.4057 -5.8540 29 1 -0.3634 -1.0277 -0.0064 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 0.0924 -0.6798 2.0564 33 1 -1.5350 -0.9649 4.9542 34 1 1.4521 -2.7778 0.6580 35 1 3.1325 -2.6598 1.2791 36 1 2.7178 -2.7049 -1.3931 37 1 3.9124 -1.5588 -0.7113 38 1 2.0110 -2.2343 -3.5035 39 1 3.4492 -1.1857 -3.5195 40 1 1.3967 0.0544 -7.2994 41 1 2.2059 -1.0827 -9.3263 42 1 3.6510 -3.0658 -9.1338 43 1 3.4919 -2.7778 -4.8801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987488621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:22 Heat of formation + Delta-G solvation = -25.849870 kcal Electronic energy + Delta-G solvation = -26288.836497 eV Core-core repulsion = 22361.107758 eV Total energy + Delta-G solvation = -3927.728739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79014 -39.90700 -38.18528 -37.28366 -36.62217 -34.28409 -31.96867 -31.29733 -30.85579 -30.61617 -29.41155 -27.77561 -25.29461 -23.73261 -23.20381 -22.84181 -22.36498 -19.88862 -18.97101 -18.66355 -17.60894 -16.96113 -16.70422 -16.66398 -16.22332 -15.47054 -15.27711 -15.15007 -14.61415 -14.26599 -14.12285 -13.85194 -13.66329 -13.49845 -13.17368 -12.87240 -12.55564 -12.32915 -12.19308 -12.11748 -11.86245 -11.60915 -11.58993 -11.36825 -11.30878 -11.19695 -11.01311 -10.85540 -10.52644 -10.29296 -10.06317 -9.79788 -9.60046 -9.34443 -8.99570 -8.66740 -8.54551 -7.07870 -5.85688 -3.16087 0.69997 0.88971 1.67749 2.29273 2.56082 3.20028 3.36379 3.38807 3.43917 3.44771 4.24113 4.37727 4.48678 4.51261 4.64946 4.69255 4.72740 4.88979 4.92460 5.08009 5.15492 5.20447 5.27231 5.45421 5.48699 5.56801 5.69605 5.72596 5.76679 5.91801 5.93976 6.03960 6.14528 6.15648 6.23444 6.48406 6.49080 6.61513 6.75210 6.90782 6.92539 7.57118 7.61603 8.15500 8.32614 9.44244 9.98511 10.33375 11.36562 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.002107 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.404708 B =13287.101615 C =14259.708633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.074 0.926 4 C 0.174 3.826 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.092 3.908 17 N -0.606 5.606 18 C 0.530 3.470 19 O -0.519 6.519 20 C 0.043 3.957 21 O -0.282 6.282 22 C 0.147 3.853 23 C -0.144 4.144 24 C -0.067 4.067 25 C -0.152 4.152 26 C 0.006 3.994 27 Cl -0.067 7.067 28 C -0.206 4.206 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -4.664 -24.561 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.092 0.908 4 C 0.062 3.938 5 H 0.082 0.918 6 N -0.360 5.360 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.194 4.194 16 C -0.031 4.031 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.394 6.394 20 C -0.035 4.035 21 O -0.194 6.194 22 C 0.101 3.899 23 C -0.163 4.163 24 C -0.085 4.085 25 C -0.171 4.171 26 C -0.021 4.021 27 Cl -0.038 7.038 28 C -0.225 4.225 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.978 -4.085 -24.536 26.801 hybrid contribution 0.269 -0.699 1.087 1.320 sum 10.247 -4.784 -23.449 26.034 Atomic orbital electron populations 1.22019 0.94374 1.02566 1.02857 1.21881 0.95559 0.95769 0.83968 0.90781 1.21178 0.93300 0.91986 0.87347 0.91802 1.42665 1.05105 1.85285 1.02991 1.19179 0.92979 1.41610 0.83987 0.91086 1.24766 0.95296 1.02365 0.98193 1.69645 0.99296 1.56071 1.32786 0.86245 0.77042 0.78071 0.84644 1.21180 1.21673 1.21214 1.23562 1.01814 1.01444 0.92627 1.22485 0.94629 0.88215 0.97767 1.48490 1.50287 1.30954 1.04439 1.19422 0.81701 0.85201 0.82098 1.90739 1.37510 1.28281 1.82884 1.22556 1.00677 0.98137 0.82160 1.86201 1.69181 1.52376 1.11657 1.18928 0.92890 0.90908 0.87198 1.20613 1.03766 1.02750 0.89177 1.20942 0.95273 0.93913 0.98377 1.20985 1.01453 0.98572 0.96057 1.20649 0.96185 0.90743 0.94517 1.98388 1.66701 1.40234 1.98458 1.21139 1.03811 0.98438 0.99152 0.92420 0.90043 0.92053 0.77057 0.93267 0.90524 0.90383 0.91376 0.91258 0.88845 0.88888 0.84198 0.84189 0.84752 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.93 37.15 0.29 -2.65 16 2 C 0.13 2.23 3.49 -66.95 -0.23 2.00 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 4 C 0.17 3.18 3.45 -66.08 -0.23 2.95 16 5 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 6 N -0.72 -16.83 5.02 -51.64 -0.26 -17.08 16 7 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.15 -2.32 6.77 -24.58 -0.17 -2.49 16 16 C 0.09 1.07 6.69 -2.53 -0.02 1.05 16 17 N -0.61 -8.72 3.08 -163.01 -0.50 -9.23 16 18 C 0.53 7.88 7.71 -10.99 -0.08 7.80 16 19 O -0.52 -9.81 15.39 -14.35 -0.22 -10.03 16 20 C 0.04 0.47 4.23 36.01 0.15 0.62 16 21 O -0.28 -3.55 9.67 -39.34 -0.38 -3.93 16 22 C 0.15 1.53 6.69 -39.22 -0.26 1.26 16 23 C -0.14 -1.28 9.99 -39.43 -0.39 -1.67 16 24 C -0.07 -0.46 10.04 -39.61 -0.40 -0.86 16 25 C -0.15 -1.11 9.83 -39.53 -0.39 -1.50 16 26 C 0.01 0.05 6.32 -39.52 -0.25 -0.20 16 27 Cl -0.07 -0.54 28.95 -51.86 -1.50 -2.05 16 28 C -0.21 -1.87 8.82 -39.40 -0.35 -2.22 16 29 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 31 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 32 H 0.39 9.76 4.94 -40.82 -0.20 9.56 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.09 0.82 7.37 -51.93 -0.38 0.44 16 39 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.14 1.07 6.30 -52.48 -0.33 0.74 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -31.71 369.74 -9.91 -41.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.75 Total: 7.86 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.57 Total: -2.87 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.04 Total: -52.74 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.60 Total: -13.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.71 -9.91 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987488621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.763 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds