Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35728 * 117.00154 * 2 1 4 4 C 1.38970 * 119.91861 * 0.02981 * 3 2 1 5 5 C 1.37702 * 120.10741 * 179.69201 * 4 3 2 6 6 C 1.39743 * 119.93072 * 0.58022 * 5 4 3 7 7 C 1.47600 * 120.08567 * 179.69751 * 6 5 4 8 8 O 1.21588 * 120.00025 * 155.19347 * 7 6 5 9 9 N 1.34777 * 119.99871 * 335.19322 * 7 6 5 10 10 C 1.47424 * 125.64848 * 354.21275 * 9 7 6 11 11 C 1.54918 * 104.82809 * 204.09603 * 10 9 7 12 12 C 1.55161 * 101.57982 * 322.98619 * 11 10 9 13 13 H 1.09001 * 110.71915 * 277.14066 * 12 11 10 14 14 N 1.46496 * 110.71722 * 153.86893 * 12 11 10 15 15 C 1.36938 * 119.99912 * 86.45357 * 14 12 11 16 16 H 1.07998 * 120.00047 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99962 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99998 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47383 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47230 * 120.00091 * 19 17 15 22 22 H 1.48500 * 109.47045 * 239.99955 * 19 17 15 23 23 C 1.47023 * 125.64443 * 174.17016 * 9 7 6 24 24 H 1.09000 * 109.88376 * 59.56380 * 23 9 7 25 25 C 1.52997 * 109.88587 * 298.39201 * 23 9 7 26 26 C 1.39722 * 119.82727 * 359.41687 * 6 5 4 27 27 C 1.37816 * 119.89883 * 0.28313 * 26 6 5 28 28 Cl 1.73599 * 119.96554 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46365 * 299.99324 * 1 2 3 31 31 H 1.08997 * 109.47038 * 59.99299 * 1 2 3 32 32 H 1.08008 * 119.94294 * 359.95117 * 4 3 2 33 33 H 1.07997 * 120.03847 * 180.27333 * 5 4 3 34 34 H 1.08991 * 110.36591 * 85.25581 * 10 9 7 35 35 H 1.08999 * 110.36359 * 322.92942 * 10 9 7 36 36 H 1.08988 * 111.00589 * 81.06457 * 11 10 9 37 37 H 1.09006 * 110.99542 * 204.88080 * 11 10 9 38 38 H 0.96997 * 120.00389 * 266.45960 * 14 12 11 39 39 H 0.97004 * 119.99959 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47055 * 302.19736 * 25 23 9 41 41 H 1.09001 * 109.47021 * 62.19214 * 25 23 9 42 42 H 1.09001 * 109.47466 * 182.19354 * 25 23 9 43 43 H 1.08000 * 120.04897 * 180.25419 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2868 2.3738 0.0006 5 6 1.9079 3.6027 0.0070 6 6 3.3033 3.6788 0.0006 7 6 3.9726 4.9943 0.0007 8 8 5.1022 5.1017 0.4375 9 7 3.3315 6.0766 -0.4833 10 6 2.0161 6.0697 -1.1490 11 6 2.0111 7.3438 -2.0302 12 6 2.7752 8.3491 -1.1286 13 1 2.1043 8.7967 -0.3954 14 7 3.4237 9.3830 -1.9390 15 6 2.7279 10.5052 -2.3018 16 1 1.7009 10.6279 -1.9908 17 6 3.3425 11.4851 -3.0693 18 7 4.5939 11.3353 -3.4487 19 14 2.3935 13.0163 -3.5636 20 1 1.0154 12.9432 -3.0152 21 1 3.0782 14.2186 -3.0244 22 1 2.3323 13.1040 -5.0448 23 6 3.8279 7.4596 -0.4340 24 1 4.7793 7.5310 -0.9611 25 6 4.0015 7.8987 1.0212 26 6 4.0632 2.5063 0.0001 27 6 3.4342 1.2800 0.0000 28 17 4.3767 -0.1779 -0.0014 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.2083 2.3147 0.0003 33 1 1.3174 4.5069 0.0120 34 1 1.2166 6.1165 -0.4097 35 1 1.9093 5.1794 -1.7687 36 1 2.5445 7.1742 -2.9654 37 1 0.9929 7.6837 -2.2196 38 1 4.3459 9.2726 -2.2187 39 1 5.0232 12.0199 -3.9853 40 1 3.0500 7.8055 1.5449 41 1 4.7460 7.2664 1.5051 42 1 4.3323 8.9369 1.0506 43 1 5.1418 2.5609 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987488661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = -45.490029 kcal Electronic energy + Delta-G solvation = -26753.255753 eV Core-core repulsion = 22824.675352 eV Total energy + Delta-G solvation = -3928.580400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82830 -40.87083 -39.04419 -38.18373 -37.40690 -35.94828 -33.59445 -32.48552 -31.98671 -31.56326 -30.43899 -28.28475 -26.92214 -25.13377 -24.98973 -23.67093 -23.07787 -21.67911 -20.59310 -19.29460 -19.07156 -18.45019 -17.66138 -17.46172 -16.82588 -16.54211 -16.28815 -15.97057 -15.62843 -15.44690 -15.09955 -15.07696 -14.70998 -14.57600 -14.27768 -14.19812 -13.78264 -13.58039 -13.34111 -13.14175 -12.96110 -12.91449 -12.65596 -12.58082 -12.50572 -12.22135 -12.10255 -12.05420 -12.02688 -11.90130 -11.65504 -11.51530 -11.04348 -10.89089 -10.09484 -9.74106 -9.33431 -9.00751 -7.92276 -5.22227 -0.27770 0.01235 1.03460 1.50919 1.51472 1.61309 1.64960 1.86516 2.14974 2.55435 2.59720 3.33357 3.43687 3.59998 3.67729 3.78572 3.83200 3.99654 4.01594 4.19799 4.22203 4.32907 4.39870 4.40688 4.46040 4.51903 4.59138 4.64861 4.68167 4.75896 4.81310 4.91881 4.99907 5.04980 5.10911 5.22788 5.25506 5.30169 5.41011 5.48833 5.57743 6.17299 6.28004 6.49142 7.04962 7.34391 8.06776 8.29992 9.31644 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.002391 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.252516 B =11708.631074 C =12341.861901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.163 3.837 4 C -0.192 4.192 5 C -0.038 4.038 6 C -0.170 4.170 7 C 0.572 3.428 8 O -0.583 6.583 9 N -0.602 5.602 10 C 0.098 3.902 11 C -0.149 4.149 12 C 0.172 3.828 13 H 0.077 0.923 14 N -0.731 5.731 15 C -0.231 4.231 16 H 0.087 0.913 17 C -0.079 4.079 18 N -0.973 5.973 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.299 1.299 22 H -0.298 1.298 23 C 0.133 3.867 24 H 0.043 0.957 25 C -0.144 4.144 26 C -0.026 4.026 27 C -0.094 4.094 28 Cl -0.058 7.058 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 -24.123 8.629 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.115 3.885 4 C -0.211 4.211 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.363 3.637 8 O -0.464 6.464 9 N -0.334 5.334 10 C -0.023 4.023 11 C -0.190 4.190 12 C 0.062 3.938 13 H 0.094 0.906 14 N -0.370 5.370 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.271 4.271 18 N -0.624 5.624 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.227 1.227 22 H -0.225 1.225 23 C 0.028 3.972 24 H 0.061 0.939 25 C -0.202 4.202 26 C -0.045 4.045 27 C -0.121 4.121 28 Cl -0.029 7.029 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.200 0.800 33 H 0.189 0.811 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.202 0.798 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.755 -24.326 8.880 29.322 hybrid contribution 0.854 1.033 -0.681 1.503 sum -12.900 -23.293 8.199 27.861 Atomic orbital electron populations 1.23559 0.75193 1.06247 1.03289 1.86135 1.24422 1.25442 1.87022 1.19068 0.90023 0.86425 0.92993 1.21529 1.02242 0.89752 1.07542 1.21963 0.92152 1.00002 0.91513 1.19533 0.94951 0.91277 1.11555 1.18168 0.84647 0.83695 0.77209 1.90760 1.19950 1.86050 1.49654 1.48427 1.21662 1.05888 1.57466 1.22912 0.84007 0.99447 0.95983 1.23436 1.02311 0.94959 0.98287 1.21451 0.92217 0.87879 0.92241 0.90554 1.42559 1.13337 1.19790 1.61306 1.19664 0.96007 0.95770 1.24824 0.89538 1.25588 0.97150 1.02225 1.02092 1.69846 1.13108 1.36188 1.43254 0.85082 0.78442 0.79306 0.76973 1.18284 1.22672 1.22519 1.21652 0.97375 0.81019 0.97140 0.93913 1.21938 1.02414 1.01054 0.94832 1.20863 1.00749 0.89122 0.93815 1.20055 0.89706 0.88365 1.14021 1.98364 1.72096 1.35213 1.97242 0.86227 0.90576 0.90551 0.79959 0.81084 0.87266 0.88450 0.92938 0.88556 0.79843 0.94217 0.90621 0.93291 0.92150 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -4.65 9.94 -90.51 -0.90 -5.55 16 3 C 0.16 2.74 6.69 22.65 0.15 2.89 16 4 C -0.19 -2.29 9.01 22.32 0.20 -2.09 16 5 C -0.04 -0.58 8.06 22.51 0.18 -0.40 16 6 C -0.17 -4.01 5.67 -20.08 -0.11 -4.12 16 7 C 0.57 17.72 7.38 86.71 0.64 18.36 16 8 O -0.58 -22.97 15.87 -3.99 -0.06 -23.04 16 9 N -0.60 -17.25 3.06 -791.69 -2.43 -19.67 16 10 C 0.10 2.00 4.99 86.86 0.43 2.44 16 11 C -0.15 -4.24 6.77 31.99 0.22 -4.03 16 12 C 0.17 6.10 3.12 46.18 0.14 6.25 16 13 H 0.08 2.57 7.83 -2.39 -0.02 2.56 16 14 N -0.73 -34.99 5.25 -317.32 -1.67 -36.66 16 15 C -0.23 -12.01 9.98 84.03 0.84 -11.17 16 16 H 0.09 4.18 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 18 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 19 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 C 0.13 4.59 3.18 45.34 0.14 4.73 16 24 H 0.04 1.79 7.69 -2.39 -0.02 1.78 16 25 C -0.14 -4.66 9.10 71.98 0.65 -4.00 16 26 C -0.03 -0.63 9.36 22.53 0.21 -0.42 16 27 C -0.09 -2.02 6.32 22.37 0.14 -1.88 16 28 Cl -0.06 -1.24 28.49 -2.72 -0.08 -1.32 16 29 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.16 7.65 -2.38 -0.02 0.14 16 31 H 0.08 0.17 7.65 -2.39 -0.02 0.15 16 32 H 0.18 0.72 6.28 -2.91 -0.02 0.70 16 33 H 0.17 1.80 4.61 -2.91 -0.01 1.79 16 34 H 0.11 1.44 6.81 -2.39 -0.02 1.42 16 35 H 0.10 1.62 6.85 -2.39 -0.02 1.60 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.40 8.14 -2.38 -0.02 2.39 16 38 H 0.37 19.92 7.51 -92.71 -0.70 19.22 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 41 H 0.05 1.69 7.10 -2.39 -0.02 1.67 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.14 3.58 7.84 -2.91 -0.02 3.56 16 Total: -1.00 -72.93 366.14 2.96 -69.97 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.36 Total: 24.62 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.42 Total: 3.82 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -3.81 Total: -115.13 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.96 Total: -28.59 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -72.93 2.96 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987488661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.482 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds