Wall clock time and date at job start Tue Mar 31 2020 20:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35939 * 117.00218 * 2 1 4 4 C 1.38404 * 119.98601 * 0.02562 * 3 2 1 5 5 C 1.39549 * 119.80480 * 179.71905 * 4 3 2 6 6 C 1.47801 * 120.10607 * 180.29546 * 5 4 3 7 7 O 1.21561 * 119.99564 * 6.97865 * 6 5 4 8 8 N 1.34775 * 119.99711 * 186.97706 * 6 5 4 9 9 C 1.47429 * 125.64386 * 184.03544 * 8 6 5 10 10 C 1.54910 * 104.83092 * 204.09334 * 9 8 6 11 11 H 1.08997 * 111.00933 * 81.06124 * 10 9 8 12 12 N 1.46503 * 111.00390 * 204.91876 * 10 9 8 13 13 C 1.36938 * 119.99583 * 273.54351 * 12 10 9 14 14 H 1.07998 * 120.00231 * 359.97438 * 13 12 10 15 15 C 1.38806 * 119.99814 * 180.02562 * 13 12 10 16 16 N 1.31621 * 120.00080 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00124 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47087 * 89.99486 * 17 15 13 19 19 H 1.48501 * 109.46948 * 209.99545 * 17 15 13 20 20 H 1.48505 * 109.46715 * 329.99499 * 17 15 13 21 21 C 1.55165 * 101.58075 * 322.99042 * 10 9 8 22 22 C 1.47022 * 125.65188 * 3.72443 * 8 6 5 23 23 H 1.08999 * 109.88306 * 298.39666 * 22 8 6 24 24 C 1.53002 * 109.88041 * 59.56033 * 22 8 6 25 25 C 1.39622 * 119.78603 * 0.27563 * 5 4 3 26 26 C 1.37930 * 119.97754 * 359.97438 * 25 5 4 27 27 C 1.38411 * 120.18816 * 0.02562 * 26 25 5 28 28 Cl 1.73604 * 119.89175 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.47560 * 59.99297 * 1 2 3 30 30 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47155 * 299.99247 * 1 2 3 32 32 H 1.07994 * 120.09809 * 359.97438 * 4 3 2 33 33 H 1.09001 * 110.36606 * 322.92669 * 9 8 6 34 34 H 1.09001 * 110.36804 * 85.14514 * 9 8 6 35 35 H 0.96996 * 120.00101 * 93.54905 * 12 10 9 36 36 H 0.97000 * 120.00209 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.72084 * 153.86595 * 21 10 9 38 38 H 1.09006 * 110.71627 * 277.13899 * 21 10 9 39 39 H 1.09005 * 109.47236 * 78.43275 * 24 22 8 40 40 H 1.08998 * 109.46980 * 198.43191 * 24 22 8 41 41 H 1.09005 * 109.47236 * 318.43601 * 24 22 8 42 42 H 1.08008 * 120.01271 * 179.97438 * 25 5 4 43 43 H 1.07991 * 119.90499 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2921 2.3718 0.0005 5 6 1.9296 3.6131 0.0065 6 6 1.1309 4.8567 0.0137 7 8 -0.0767 4.8027 0.1424 8 7 1.7414 6.0505 -0.1224 9 6 1.0811 7.3666 -0.0491 10 6 2.0037 8.3184 -0.8506 11 1 1.8225 8.2280 -1.9216 12 7 1.8397 9.7051 -0.4075 13 6 0.8564 10.4865 -0.9534 14 1 0.2022 10.0806 -1.7108 15 6 0.7013 11.8006 -0.5341 16 7 1.4989 12.2954 0.3886 17 14 -0.6404 12.8663 -1.2781 18 1 -1.8842 12.7258 -0.4792 19 1 -0.2054 14.2862 -1.2714 20 1 -0.8979 12.4340 -2.6753 21 6 3.4092 7.7777 -0.4768 22 6 3.1773 6.2562 -0.3622 23 1 3.7537 5.8531 0.4705 24 6 3.5908 5.5698 -1.6656 25 6 3.3244 3.6766 0.0060 26 6 4.0671 2.5143 0.0002 27 6 3.4337 1.2836 -0.0057 28 17 4.3761 -0.1743 -0.0136 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 0.2135 2.3169 0.0005 33 1 0.0930 7.3213 -0.5071 34 1 1.0033 7.6948 0.9875 35 1 2.4275 10.0698 0.2724 36 1 1.3903 13.2136 0.6820 37 1 4.1303 8.0021 -1.2627 38 1 3.7384 8.1870 0.4784 39 1 3.2891 6.1863 -2.5124 40 1 4.6726 5.4378 -1.6794 41 1 3.1050 4.5964 -1.7336 42 1 3.8216 4.6354 0.0102 43 1 5.1458 2.5647 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989523179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:17 Heat of formation + Delta-G solvation = -16.662082 kcal Electronic energy + Delta-G solvation = -27005.962591 eV Core-core repulsion = 23078.632264 eV Total energy + Delta-G solvation = -3927.330327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16650 -40.80843 -38.97692 -38.48566 -37.44177 -36.21517 -33.71915 -32.73506 -32.21026 -31.42952 -29.86534 -28.18223 -27.06984 -25.99228 -24.84581 -23.38085 -23.03942 -21.69471 -20.93788 -19.44208 -19.07858 -18.16461 -17.58018 -17.08284 -17.06116 -16.90302 -16.49500 -16.28706 -15.72721 -15.29995 -15.24619 -15.08956 -14.86127 -14.57073 -14.33422 -14.16584 -13.88352 -13.51902 -13.30018 -13.04176 -12.98116 -12.83127 -12.66801 -12.51832 -12.45015 -12.30974 -12.23046 -12.08839 -11.90839 -11.77918 -11.65789 -11.34823 -11.16725 -10.98962 -10.11344 -9.75477 -9.27796 -9.08169 -7.98155 -5.27696 -0.49572 0.17685 1.05339 1.46998 1.48535 1.56149 1.60587 1.78078 2.15964 2.54340 2.57812 3.22740 3.36131 3.48568 3.61036 3.77003 3.86384 3.97610 4.03877 4.06445 4.22258 4.29098 4.30254 4.30597 4.40946 4.47465 4.59276 4.67142 4.72053 4.74940 4.84970 4.91282 4.93446 5.05469 5.10556 5.19782 5.25468 5.30008 5.40801 5.46679 5.52485 6.10410 6.24075 6.43595 6.95886 7.31839 8.03005 8.27315 9.24321 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002446 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.379798 B =11444.090838 C =12306.895980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.316 6.316 3 C 0.118 3.882 4 C -0.149 4.149 5 C -0.102 4.102 6 C 0.562 3.438 7 O -0.587 6.587 8 N -0.598 5.598 9 C 0.091 3.909 10 C 0.168 3.832 11 H 0.061 0.939 12 N -0.722 5.722 13 C -0.247 4.247 14 H 0.072 0.928 15 C -0.067 4.067 16 N -0.963 5.963 17 Si 0.967 3.033 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.270 1.270 21 C -0.124 4.124 22 C 0.116 3.884 23 H 0.121 0.879 24 C -0.179 4.179 25 C -0.129 4.129 26 C -0.074 4.074 27 C -0.053 4.053 28 Cl -0.049 7.049 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.380 0.620 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.196 0.804 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 -25.675 -1.873 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.229 6.229 3 C 0.071 3.929 4 C -0.169 4.169 5 C -0.105 4.105 6 C 0.353 3.647 7 O -0.469 6.469 8 N -0.329 5.329 9 C -0.035 4.035 10 C 0.057 3.943 11 H 0.079 0.921 12 N -0.361 5.361 13 C -0.378 4.378 14 H 0.090 0.910 15 C -0.260 4.260 16 N -0.613 5.613 17 Si 0.796 3.204 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.195 1.195 21 C -0.162 4.162 22 C 0.014 3.986 23 H 0.138 0.862 24 C -0.236 4.236 25 C -0.146 4.146 26 C -0.093 4.093 27 C -0.081 4.081 28 Cl -0.020 7.020 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.213 0.787 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.212 0.788 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.800 -26.002 -1.930 27.518 hybrid contribution -1.511 1.057 0.162 1.851 sum 7.289 -24.944 -1.768 26.047 Atomic orbital electron populations 1.23384 0.76298 1.05979 1.02049 1.86137 1.23300 1.25102 1.88376 1.18589 0.90936 0.85062 0.98307 1.21264 1.01055 0.90487 1.04108 1.19643 0.94674 0.91526 1.04693 1.18358 0.86647 0.83335 0.76336 1.90740 1.16045 1.87338 1.52787 1.48521 1.10622 1.04774 1.69023 1.23064 0.97703 0.82202 1.00535 1.21422 0.93757 0.83042 0.96036 0.92139 1.42406 1.38430 1.07677 1.47566 1.19556 1.08512 0.93217 1.16544 0.90985 1.25478 1.01668 0.98700 1.00111 1.69781 1.41708 1.15450 1.34341 0.85244 0.78794 0.78032 0.78313 1.21854 1.21895 1.19521 1.22976 0.96796 0.92524 1.03899 1.22362 0.79985 0.96492 0.99757 0.86234 1.22776 1.04473 1.00725 0.95603 1.23050 0.91862 1.02304 0.97378 1.21264 1.02392 0.88031 0.97571 1.20729 0.88651 0.89938 1.08750 1.98377 1.71284 1.35597 1.96787 0.92120 0.85346 0.92227 0.84158 0.93712 0.92965 0.78717 0.93849 0.87447 0.90086 0.92268 0.86888 0.91457 0.78842 0.80171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -6.23 9.94 -92.86 -0.92 -7.15 16 3 C 0.12 2.47 6.67 22.48 0.15 2.62 16 4 C -0.15 -3.51 8.58 22.63 0.19 -3.32 16 5 C -0.10 -2.47 5.17 -20.10 -0.10 -2.57 16 6 C 0.56 17.98 7.54 86.77 0.65 18.64 16 7 O -0.59 -23.77 16.60 -3.91 -0.06 -23.83 16 8 N -0.60 -17.73 3.08 -795.57 -2.45 -20.18 16 9 C 0.09 3.39 6.62 86.85 0.57 3.97 16 10 C 0.17 6.08 3.69 46.39 0.17 6.25 16 11 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 12 N -0.72 -34.03 5.28 -316.36 -1.67 -35.70 16 13 C -0.25 -13.24 9.98 84.03 0.84 -12.40 16 14 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 15 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 16 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 17 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 18 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.12 -3.07 6.01 31.79 0.19 -2.88 16 22 C 0.12 2.34 2.72 45.34 0.12 2.47 16 23 H 0.12 1.73 6.04 -2.39 -0.01 1.72 16 24 C -0.18 -2.75 7.65 71.98 0.55 -2.20 16 25 C -0.13 -2.13 6.53 22.53 0.15 -1.98 16 26 C -0.07 -1.03 9.81 22.24 0.22 -0.81 16 27 C -0.05 -0.96 6.34 22.48 0.14 -0.82 16 28 Cl -0.05 -0.84 28.49 -2.72 -0.08 -0.91 16 29 H 0.06 0.82 7.66 -2.38 -0.02 0.81 16 30 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.83 7.66 -2.38 -0.02 0.81 16 32 H 0.14 3.44 5.90 -2.91 -0.02 3.42 16 33 H 0.04 1.89 8.00 -2.39 -0.02 1.87 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.38 18.91 7.71 -92.71 -0.71 18.20 16 36 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.11 2.23 7.83 -2.39 -0.02 2.21 16 38 H 0.08 2.04 8.00 -2.38 -0.02 2.02 16 39 H 0.06 1.07 7.99 -2.38 -0.02 1.05 16 40 H 0.11 0.90 8.11 -2.39 -0.02 0.88 16 41 H 0.07 1.15 4.76 -2.38 -0.01 1.14 16 42 H 0.20 2.46 2.21 -4.57 -0.01 2.45 16 43 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -71.41 360.40 2.90 -68.51 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.35 Total: 23.32 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.43 Total: 5.06 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.84 Total: -112.47 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.99 Total: -30.98 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -71.41 2.90 -68.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989523179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.847 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds