Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99749 * 2 1 4 4 C 1.54333 * 109.99045 * 238.96607 * 2 1 3 5 5 C 1.55161 * 103.01732 * 218.66076 * 4 2 1 6 6 H 1.08999 * 111.00897 * 277.23034 * 5 4 2 7 7 N 1.46504 * 111.03426 * 153.39708 * 5 4 2 8 8 C 1.36934 * 120.00037 * 161.33479 * 7 5 4 9 9 H 1.08005 * 119.99868 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00300 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99832 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00352 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46997 * 120.00311 * 12 10 8 15 15 H 1.48496 * 109.47462 * 240.00405 * 12 10 8 16 16 C 1.54911 * 101.58191 * 35.31135 * 5 4 2 17 17 N 1.47016 * 109.88525 * 121.09692 * 2 1 3 18 18 C 1.34784 * 125.64726 * 298.39604 * 17 2 1 19 19 O 1.21286 * 119.99784 * 359.71745 * 18 17 2 20 20 C 1.50695 * 120.00087 * 179.71446 * 18 17 2 21 21 O 1.42896 * 109.47401 * 180.02562 * 20 18 17 22 22 C 1.35922 * 117.00471 * 179.97438 * 21 20 18 23 23 C 1.38710 * 120.05731 * 0.02562 * 22 21 20 24 24 C 1.38151 * 119.95740 * 180.02562 * 23 22 21 25 25 C 1.38274 * 120.07719 * 0.02562 * 24 23 22 26 26 C 1.38245 * 120.12107 * 359.97295 * 25 24 23 27 27 C 1.38260 * 120.04016 * 0.02562 * 26 25 24 28 28 Cl 1.73598 * 120.03731 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.47453 * 300.35665 * 1 2 3 30 30 H 1.09005 * 109.47299 * 60.36244 * 1 2 3 31 31 H 1.09006 * 109.46892 * 180.35575 * 1 2 3 32 32 H 1.08999 * 110.85113 * 100.19973 * 4 2 1 33 33 H 1.08996 * 110.67218 * 337.04413 * 4 2 1 34 34 H 0.97006 * 120.00134 * 341.32712 * 7 5 4 35 35 H 0.96998 * 119.99965 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36462 * 204.15146 * 16 5 4 37 37 H 1.09000 * 110.36761 * 81.82333 * 16 5 4 38 38 H 1.08999 * 109.47295 * 59.99820 * 20 18 17 39 39 H 1.09000 * 109.47238 * 300.00166 * 20 18 17 40 40 H 1.08001 * 120.02181 * 0.03895 * 23 22 21 41 41 H 1.07998 * 119.96056 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.94300 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.98239 * 179.74871 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 6 3.2864 -1.5182 -0.6915 6 1 4.1670 -0.8767 -0.6580 7 7 3.5485 -2.7241 -1.4812 8 6 4.7747 -3.3303 -1.4186 9 1 5.5485 -2.9198 -0.7868 10 6 5.0230 -4.4732 -2.1663 11 7 4.0798 -4.9738 -2.9359 12 14 6.6960 -5.2998 -2.0816 13 1 7.5740 -4.5459 -1.1511 14 1 6.5357 -6.6924 -1.5914 15 1 7.3080 -5.3186 -3.4344 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1838 18 6 1.8074 -0.3620 2.4657 19 8 1.1474 0.6238 2.7180 20 6 2.3784 -1.1933 3.5854 21 8 2.0067 -0.6211 4.8409 22 6 2.4438 -1.2543 5.9614 23 6 3.2150 -2.4023 5.8545 24 6 3.6577 -3.0446 6.9947 25 6 3.3326 -2.5446 8.2423 26 6 2.5642 -1.4007 8.3525 27 6 2.1185 -0.7539 7.2147 28 17 1.1532 0.6822 7.3532 29 1 -0.3634 0.5194 0.8868 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 2.3597 -0.0449 -2.0192 33 1 1.3067 -1.4404 -1.6226 34 1 2.8533 -3.0931 -2.0482 35 1 4.2533 -5.7722 -3.4587 36 1 3.6656 -2.0411 1.3932 37 1 2.1802 -2.7718 0.7113 38 1 3.4651 -1.2160 3.5035 39 1 1.9879 -2.2089 3.5196 40 1 3.4693 -2.7938 4.8806 41 1 4.2584 -3.9382 6.9116 42 1 3.6795 -3.0487 9.1322 43 1 2.3082 -1.0144 9.3280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989784865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = -50.422832 kcal Electronic energy + Delta-G solvation = -26500.405334 eV Core-core repulsion = 22571.611031 eV Total energy + Delta-G solvation = -3928.794303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67089 -40.87408 -39.02920 -38.18387 -37.34246 -35.98269 -33.42431 -33.07805 -31.85016 -31.20486 -30.10389 -29.00458 -26.75181 -25.80264 -24.09597 -23.49618 -22.67102 -21.77220 -20.09324 -19.62453 -19.15497 -17.99720 -17.79837 -17.49992 -17.11822 -16.91436 -16.42290 -15.87023 -15.54379 -15.42398 -15.32238 -14.89094 -14.83756 -14.53491 -14.26827 -14.21113 -13.75759 -13.69681 -13.43216 -13.06241 -12.87881 -12.87485 -12.81818 -12.58485 -12.34071 -12.23208 -12.19278 -12.04712 -12.01433 -11.79850 -11.71985 -11.50142 -11.05969 -10.86541 -9.92670 -9.75606 -9.27149 -9.04120 -7.92831 -5.22718 0.11996 0.28333 1.16210 1.38013 1.42305 1.51866 1.53901 1.62201 2.38183 2.59479 2.61993 3.23849 3.39073 3.69238 3.74396 3.79878 3.87560 3.93436 4.00320 4.01237 4.15619 4.20829 4.30586 4.32945 4.42228 4.45551 4.51087 4.70963 4.74218 4.76195 4.85050 5.05831 5.07481 5.11525 5.21159 5.25315 5.35811 5.38740 5.43204 5.57725 5.65235 6.12360 6.28128 6.40703 6.99831 7.36447 8.07449 8.31288 9.30141 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.002891 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.430976 B = 9683.167991 C =11876.403523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.065 0.935 7 N -0.723 5.723 8 C -0.239 4.239 9 H 0.082 0.918 10 C -0.069 4.069 11 N -0.966 5.966 12 Si 0.967 3.033 13 H -0.263 1.263 14 H -0.296 1.296 15 H -0.299 1.299 16 C 0.081 3.919 17 N -0.603 5.603 18 C 0.528 3.472 19 O -0.563 6.563 20 C 0.047 3.953 21 O -0.306 6.306 22 C 0.114 3.886 23 C -0.205 4.205 24 C -0.072 4.072 25 C -0.141 4.141 26 C -0.076 4.076 27 C -0.091 4.091 28 Cl -0.074 7.074 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.377 0.623 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 5.507 19.922 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.162 4.162 5 C 0.055 3.945 6 H 0.083 0.917 7 N -0.362 5.362 8 C -0.371 4.371 9 H 0.100 0.900 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.797 3.203 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.227 1.227 16 C -0.044 4.044 17 N -0.338 5.338 18 C 0.316 3.684 19 O -0.442 6.442 20 C -0.031 4.031 21 O -0.219 6.219 22 C 0.068 3.932 23 C -0.224 4.224 24 C -0.090 4.090 25 C -0.159 4.159 26 C -0.094 4.094 27 C -0.118 4.118 28 Cl -0.045 7.045 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.210 0.790 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.805 6.331 20.152 21.308 hybrid contribution 0.377 -0.698 -0.668 1.037 sum -2.428 5.633 19.483 20.426 Atomic orbital electron populations 1.22065 0.94248 1.02133 1.02761 1.21598 0.94909 0.96119 0.83666 0.90511 1.22915 0.97637 0.99510 0.96168 1.21431 0.95921 0.87998 0.89147 0.91659 1.42448 1.13257 1.28802 1.51684 1.19649 0.91171 1.05506 1.20770 0.89993 1.25491 1.00925 0.99772 1.00006 1.69807 1.34243 1.24620 1.33001 0.85174 0.80149 0.78084 0.76933 1.18735 1.22289 1.22700 1.23307 0.94869 0.87235 0.99029 1.48509 1.52187 1.28894 1.04194 1.19985 0.80469 0.85101 0.82824 1.90704 1.41149 1.28711 1.83593 1.22574 1.02269 0.97543 0.80714 1.86168 1.71836 1.51552 1.12306 1.19035 0.95683 0.93033 0.85472 1.21570 1.02501 0.96068 1.02219 1.21494 0.96773 0.99465 0.91279 1.21467 0.99200 0.96002 0.99196 1.21249 0.96214 0.95112 0.96860 1.20540 1.04473 0.94000 0.92834 1.98367 1.70310 1.37644 1.98215 0.93249 0.89644 0.92725 0.88839 0.90428 0.78994 0.94072 0.89798 0.91502 0.86684 0.86928 0.83143 0.82189 0.81718 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.11 71.98 0.66 -3.30 16 2 C 0.14 3.79 3.46 45.34 0.16 3.94 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -3.44 6.11 31.79 0.19 -3.24 16 5 C 0.17 5.51 3.69 46.38 0.17 5.68 16 6 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 7 N -0.72 -31.64 5.28 -316.36 -1.67 -33.31 16 8 C -0.24 -11.76 9.98 84.03 0.84 -10.92 16 9 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 10 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 11 N -0.97 -55.00 13.06 21.65 0.28 -54.72 16 12 Si 0.97 42.57 29.55 68.60 2.03 44.59 16 13 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 16 C 0.08 2.34 6.38 86.86 0.55 2.90 16 17 N -0.60 -17.09 3.06 -788.03 -2.41 -19.50 16 18 C 0.53 16.08 7.72 87.65 0.68 16.76 16 19 O -0.56 -21.37 15.55 15.99 0.25 -21.12 16 20 C 0.05 1.13 4.23 71.23 0.30 1.43 16 21 O -0.31 -8.73 9.13 -73.63 -0.67 -9.40 16 22 C 0.11 2.72 6.68 22.52 0.15 2.87 16 23 C -0.20 -3.69 9.04 22.36 0.20 -3.49 16 24 C -0.07 -0.97 10.04 22.26 0.22 -0.75 16 25 C -0.14 -1.72 10.04 22.28 0.22 -1.50 16 26 C -0.08 -1.22 9.83 22.28 0.22 -1.00 16 27 C -0.09 -2.08 6.33 22.41 0.14 -1.94 16 28 Cl -0.07 -1.87 28.50 -2.72 -0.08 -1.95 16 29 H 0.05 1.46 6.89 -2.39 -0.02 1.44 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 2.22 7.70 -2.39 -0.02 2.20 16 34 H 0.38 18.04 7.71 -92.70 -0.71 17.33 16 35 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.08 2.18 7.48 -2.39 -0.02 2.17 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 2.24 7.37 -2.39 -0.02 2.22 16 39 H 0.11 2.24 7.66 -2.39 -0.02 2.22 16 40 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 41 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -67.08 373.85 3.22 -63.86 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.32 Total: 27.29 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.18 Total: 4.26 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.80 Total: -107.53 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.42 Total: -30.52 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -67.08 3.22 -63.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989784865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds