Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87593 * 2 1 4 4 C 1.54322 * 109.88114 * 238.82466 * 2 1 3 5 5 C 1.55158 * 102.94246 * 262.77724 * 4 2 1 6 6 H 1.09005 * 111.03980 * 82.58548 * 5 4 2 7 7 N 1.46506 * 111.00535 * 206.42170 * 5 4 2 8 8 C 1.36939 * 120.00073 * 198.37373 * 7 5 4 9 9 H 1.08004 * 119.99859 * 0.02562 * 8 7 5 10 10 C 1.38805 * 119.99849 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00056 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00155 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46896 * 90.00225 * 12 10 8 14 14 H 1.48501 * 109.47275 * 210.00265 * 12 10 8 15 15 H 1.48499 * 109.47039 * 330.00065 * 12 10 8 16 16 C 1.54906 * 101.58230 * 324.49634 * 5 4 2 17 17 N 1.47022 * 109.88139 * 121.01926 * 2 1 3 18 18 C 1.34776 * 125.64730 * 300.43346 * 17 2 1 19 19 O 1.21287 * 119.99900 * 0.02713 * 18 17 2 20 20 C 1.50694 * 120.00239 * 180.02562 * 18 17 2 21 21 O 1.42900 * 109.47689 * 180.02562 * 20 18 17 22 22 C 1.35919 * 117.00469 * 179.97438 * 21 20 18 23 23 C 1.38709 * 120.05819 * 359.73450 * 22 21 20 24 24 C 1.38153 * 119.95740 * 179.69450 * 23 22 21 25 25 C 1.38283 * 120.07159 * 0.57377 * 24 23 22 26 26 C 1.38235 * 120.12350 * 359.71924 * 25 24 23 27 27 C 1.38255 * 120.04088 * 359.97438 * 26 25 24 28 28 Cl 1.73605 * 120.04010 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46731 * 300.44058 * 1 2 3 30 30 H 1.09004 * 109.47045 * 60.43532 * 1 2 3 31 31 H 1.09000 * 109.47164 * 180.43810 * 1 2 3 32 32 H 1.09004 * 110.72505 * 144.41356 * 4 2 1 33 33 H 1.09000 * 110.72364 * 21.14084 * 4 2 1 34 34 H 0.97005 * 119.99811 * 18.65166 * 7 5 4 35 35 H 0.97000 * 119.99835 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36606 * 155.84645 * 16 5 4 37 37 H 1.09001 * 110.37005 * 278.06247 * 16 5 4 38 38 H 1.09007 * 109.47257 * 300.00556 * 20 18 17 39 39 H 1.09004 * 109.47060 * 59.99967 * 20 18 17 40 40 H 1.08004 * 120.02473 * 359.97438 * 23 22 21 41 41 H 1.07995 * 119.96556 * 180.28926 * 24 23 22 42 42 H 1.08003 * 119.93699 * 179.74020 * 25 24 23 43 43 H 1.07998 * 119.98447 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 -1.2417 5 6 2.3518 -2.1705 -0.6894 6 1 1.4455 -2.7752 -0.6565 7 7 3.3936 -2.8334 -1.4778 8 6 3.5424 -4.1930 -1.4103 9 1 2.8914 -4.7767 -0.7762 10 6 4.5298 -4.8210 -2.1569 11 7 4.6731 -6.1278 -2.0917 12 14 5.6552 -3.8116 -3.2541 13 1 6.8529 -3.3925 -2.4827 14 1 6.0778 -4.6316 -4.4178 15 1 4.9295 -2.6082 -3.7341 16 6 2.8568 -1.8489 0.7393 17 7 2.0300 -0.7125 1.1849 18 6 1.7754 -0.3811 2.4662 19 8 1.0786 0.5794 2.7172 20 6 2.3565 -1.2038 3.5870 21 8 1.9459 -0.6571 4.8418 22 6 2.3865 -1.2865 5.9631 23 6 3.1927 -2.4103 5.8577 24 6 3.6445 -3.0447 6.9988 25 6 3.2842 -2.5675 8.2456 26 6 2.4760 -1.4513 8.3543 27 6 2.0262 -0.8089 7.2157 28 17 1.0117 0.5932 7.3523 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 2.9657 -0.2855 -1.6179 33 1 1.2918 -0.7918 -2.0190 34 1 3.9806 -2.3088 -2.0444 35 1 5.3629 -6.5667 -2.6137 36 1 2.7087 -2.7062 1.3959 37 1 3.9096 -1.5677 0.7152 38 1 2.0017 -2.2313 3.5053 39 1 3.4445 -1.1890 3.5224 40 1 3.4707 -2.7865 4.8842 41 1 4.2760 -3.9169 6.9169 42 1 3.6353 -3.0676 9.1362 43 1 2.1956 -1.0808 9.3293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989784868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = -28.727471 kcal Electronic energy + Delta-G solvation = -26561.998982 eV Core-core repulsion = 22634.145461 eV Total energy + Delta-G solvation = -3927.853521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70271 -39.88813 -38.03728 -37.13354 -36.49189 -34.42666 -32.23334 -31.59436 -31.12600 -30.41482 -28.96329 -28.06933 -25.66744 -23.91370 -23.15697 -22.69816 -21.65887 -20.39320 -19.05241 -18.72456 -17.79503 -17.01687 -16.67078 -16.61311 -16.15325 -15.59278 -15.23493 -14.83904 -14.58619 -14.17863 -14.12299 -13.83920 -13.65612 -13.32172 -13.23015 -12.92874 -12.77129 -12.63942 -12.19770 -12.11132 -12.00507 -11.69600 -11.63901 -11.50312 -11.34851 -11.16005 -10.96380 -10.93288 -10.74606 -10.46361 -10.15198 -9.78605 -9.73866 -9.19811 -9.14788 -8.56950 -8.47422 -7.50441 -5.93915 -3.32892 0.84031 1.01352 2.00655 2.34412 2.57357 3.25736 3.28378 3.32505 3.34507 3.39719 4.28379 4.43735 4.46149 4.57843 4.73596 4.83870 4.87680 4.90710 4.93280 4.95293 5.06776 5.14416 5.21238 5.40236 5.40608 5.45134 5.65128 5.68639 5.76712 5.78559 5.88856 5.89712 6.00184 6.09073 6.10572 6.22553 6.28715 6.34436 6.45301 6.62342 6.95345 7.54653 7.79232 8.15283 8.24514 9.00669 9.72876 9.90451 11.23450 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002828 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.602753 B = 9899.808672 C =11703.982120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.180 3.820 6 H 0.074 0.926 7 N -0.736 5.736 8 C -0.256 4.256 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.927 5.927 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.068 3.932 17 N -0.608 5.608 18 C 0.532 3.468 19 O -0.523 6.523 20 C 0.043 3.957 21 O -0.278 6.278 22 C 0.141 3.859 23 C -0.199 4.199 24 C -0.072 4.072 25 C -0.149 4.149 26 C -0.074 4.074 27 C -0.069 4.069 28 Cl -0.055 7.055 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.365 0.635 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 9.828 16.615 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.068 3.932 6 H 0.092 0.908 7 N -0.378 5.378 8 C -0.386 4.386 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.574 5.574 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.058 4.058 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.399 6.399 20 C -0.036 4.036 21 O -0.190 6.190 22 C 0.094 3.906 23 C -0.218 4.218 24 C -0.091 4.091 25 C -0.167 4.167 26 C -0.093 4.093 27 C -0.097 4.097 28 Cl -0.026 7.026 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.376 10.387 16.831 20.257 hybrid contribution 1.116 0.356 -0.892 1.473 sum -3.260 10.743 15.939 19.496 Atomic orbital electron populations 1.22159 0.94720 1.02551 1.02699 1.21500 0.94655 0.95907 0.83963 0.90913 1.23031 1.01879 0.96758 0.96181 1.21229 0.92583 0.91170 0.88213 0.90792 1.42677 1.37864 1.05357 1.51900 1.19043 1.14730 0.81257 1.23567 0.88990 1.24687 0.98897 0.95367 0.99597 1.69698 1.35765 1.07400 1.44514 0.86579 0.81393 0.79696 0.81008 1.20939 1.21572 1.20163 1.23531 0.95061 0.87094 1.00093 1.48479 1.50701 1.31135 1.04043 1.19462 0.81398 0.85054 0.82197 1.90724 1.37923 1.28178 1.83082 1.22548 1.00915 0.98157 0.81945 1.86216 1.69235 1.52059 1.11481 1.18755 0.94032 0.91898 0.85936 1.21357 1.02441 0.97113 1.00889 1.21106 0.97431 0.98838 0.91689 1.21046 1.00315 0.97294 0.98085 1.20926 0.96536 0.95000 0.96852 1.20212 1.02751 0.94783 0.91936 1.98382 1.66759 1.39252 1.98201 0.91291 0.91770 0.92229 0.90639 0.89665 0.80154 0.92810 0.90832 0.90898 0.88565 0.88704 0.84215 0.84851 0.84929 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.06 37.16 0.34 -1.73 16 2 C 0.14 1.90 3.49 -66.95 -0.23 1.67 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -1.89 6.12 -24.90 -0.15 -2.04 16 5 C 0.18 2.96 3.68 -65.78 -0.24 2.72 16 6 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 7 N -0.74 -15.29 5.08 -51.35 -0.26 -15.55 16 8 C -0.26 -6.53 10.47 -15.06 -0.16 -6.69 16 9 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -27.32 13.97 55.49 0.78 -26.54 16 12 Si 0.88 20.46 27.73 -169.99 -4.71 15.75 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 16 C 0.07 0.99 6.38 -2.53 -0.02 0.97 16 17 N -0.61 -8.57 3.08 -163.02 -0.50 -9.07 16 18 C 0.53 8.00 7.71 -10.99 -0.08 7.92 16 19 O -0.52 -9.57 15.40 -14.36 -0.22 -9.79 16 20 C 0.04 0.53 4.23 36.00 0.15 0.68 16 21 O -0.28 -3.93 9.13 -39.39 -0.36 -4.29 16 22 C 0.14 1.73 6.68 -39.20 -0.26 1.47 16 23 C -0.20 -2.01 9.04 -39.44 -0.36 -2.37 16 24 C -0.07 -0.61 10.04 -39.60 -0.40 -1.01 16 25 C -0.15 -1.17 10.04 -39.57 -0.40 -1.57 16 26 C -0.07 -0.67 9.83 -39.58 -0.39 -1.06 16 27 C -0.07 -0.81 6.33 -39.36 -0.25 -1.06 16 28 Cl -0.05 -0.68 28.50 -51.86 -1.48 -2.15 16 29 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 33 H 0.08 1.06 7.83 -51.93 -0.41 0.66 16 34 H 0.36 7.48 5.57 -40.82 -0.23 7.25 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.03 7.48 -51.93 -0.39 0.64 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.02 7.35 -51.93 -0.38 0.64 16 39 H 0.10 0.99 7.68 -51.93 -0.40 0.59 16 40 H 0.14 1.23 6.30 -52.48 -0.33 0.89 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -31.70 370.43 -9.60 -41.29 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.87 Total: 6.68 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.55 Total: -1.89 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.01 Total: -51.17 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.58 Total: -14.09 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.71 Total: 15.75 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.70 -9.60 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989784868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.565 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds