Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.87593 * 2 1 4 4 C 1.54322 * 109.88114 * 238.82466 * 2 1 3 5 5 C 1.55158 * 102.94246 * 262.77724 * 4 2 1 6 6 H 1.09005 * 111.03980 * 82.58548 * 5 4 2 7 7 N 1.46506 * 111.00535 * 206.42170 * 5 4 2 8 8 C 1.36939 * 120.00073 * 198.37373 * 7 5 4 9 9 H 1.08004 * 119.99859 * 0.02562 * 8 7 5 10 10 C 1.38805 * 119.99849 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00056 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00155 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46896 * 90.00225 * 12 10 8 14 14 H 1.48501 * 109.47275 * 210.00265 * 12 10 8 15 15 H 1.48499 * 109.47039 * 330.00065 * 12 10 8 16 16 C 1.54906 * 101.58230 * 324.49634 * 5 4 2 17 17 N 1.47022 * 109.88139 * 121.01926 * 2 1 3 18 18 C 1.34776 * 125.64730 * 300.43346 * 17 2 1 19 19 O 1.21287 * 119.99900 * 0.02713 * 18 17 2 20 20 C 1.50694 * 120.00239 * 180.02562 * 18 17 2 21 21 O 1.42900 * 109.47689 * 180.02562 * 20 18 17 22 22 C 1.35919 * 117.00469 * 179.97438 * 21 20 18 23 23 C 1.38709 * 120.05819 * 359.73450 * 22 21 20 24 24 C 1.38153 * 119.95740 * 179.69450 * 23 22 21 25 25 C 1.38283 * 120.07159 * 0.57377 * 24 23 22 26 26 C 1.38235 * 120.12350 * 359.71924 * 25 24 23 27 27 C 1.38255 * 120.04088 * 359.97438 * 26 25 24 28 28 Cl 1.73605 * 120.04010 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46731 * 300.44058 * 1 2 3 30 30 H 1.09004 * 109.47045 * 60.43532 * 1 2 3 31 31 H 1.09000 * 109.47164 * 180.43810 * 1 2 3 32 32 H 1.09004 * 110.72505 * 144.41356 * 4 2 1 33 33 H 1.09000 * 110.72364 * 21.14084 * 4 2 1 34 34 H 0.97005 * 119.99811 * 18.65166 * 7 5 4 35 35 H 0.97000 * 119.99835 * 179.97438 * 11 10 8 36 36 H 1.09002 * 110.36606 * 155.84645 * 16 5 4 37 37 H 1.09001 * 110.37005 * 278.06247 * 16 5 4 38 38 H 1.09007 * 109.47257 * 300.00556 * 20 18 17 39 39 H 1.09004 * 109.47060 * 59.99967 * 20 18 17 40 40 H 1.08004 * 120.02473 * 359.97438 * 23 22 21 41 41 H 1.07995 * 119.96556 * 180.28926 * 24 23 22 42 42 H 1.08003 * 119.93699 * 179.74020 * 25 24 23 43 43 H 1.07998 * 119.98447 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 -1.2417 5 6 2.3518 -2.1705 -0.6894 6 1 1.4455 -2.7752 -0.6565 7 7 3.3936 -2.8334 -1.4778 8 6 3.5424 -4.1930 -1.4103 9 1 2.8914 -4.7767 -0.7762 10 6 4.5298 -4.8210 -2.1569 11 7 4.6731 -6.1278 -2.0917 12 14 5.6552 -3.8116 -3.2541 13 1 6.8529 -3.3925 -2.4827 14 1 6.0778 -4.6316 -4.4178 15 1 4.9295 -2.6082 -3.7341 16 6 2.8568 -1.8489 0.7393 17 7 2.0300 -0.7125 1.1849 18 6 1.7754 -0.3811 2.4662 19 8 1.0786 0.5794 2.7172 20 6 2.3565 -1.2038 3.5870 21 8 1.9459 -0.6571 4.8418 22 6 2.3865 -1.2865 5.9631 23 6 3.1927 -2.4103 5.8577 24 6 3.6445 -3.0447 6.9988 25 6 3.2842 -2.5675 8.2456 26 6 2.4760 -1.4513 8.3543 27 6 2.0262 -0.8089 7.2157 28 17 1.0117 0.5932 7.3523 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3633 -1.0276 0.0079 32 1 2.9657 -0.2855 -1.6179 33 1 1.2918 -0.7918 -2.0190 34 1 3.9806 -2.3088 -2.0444 35 1 5.3629 -6.5667 -2.6137 36 1 2.7087 -2.7062 1.3959 37 1 3.9096 -1.5677 0.7152 38 1 2.0017 -2.2313 3.5053 39 1 3.4445 -1.1890 3.5224 40 1 3.4707 -2.7865 4.8842 41 1 4.2760 -3.9169 6.9169 42 1 3.6353 -3.0676 9.1362 43 1 2.1956 -1.0808 9.3293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989784868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = -46.924319 kcal Electronic energy + Delta-G solvation = -26562.788056 eV Core-core repulsion = 22634.145461 eV Total energy + Delta-G solvation = -3928.642596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69326 -40.90724 -39.08420 -38.21061 -37.34684 -36.08840 -33.58972 -33.18786 -31.85589 -31.21268 -30.43518 -29.04315 -26.80058 -25.57097 -24.09661 -23.50853 -22.80707 -21.71464 -20.22492 -19.74862 -19.45298 -18.12203 -17.61897 -17.53900 -17.06681 -16.91276 -16.31114 -16.10893 -15.57307 -15.46448 -15.27609 -14.89083 -14.76181 -14.64570 -14.41906 -14.22218 -13.97882 -13.75306 -13.37720 -13.24824 -13.10878 -12.88007 -12.83805 -12.58675 -12.32472 -12.22573 -12.17532 -12.13627 -11.92655 -11.80361 -11.79118 -11.47365 -11.09946 -10.86285 -9.93252 -9.79190 -9.33788 -9.27691 -7.99494 -5.35296 0.11414 0.27747 1.15446 1.36504 1.41038 1.43854 1.45847 1.53330 2.37193 2.51781 2.61404 3.17722 3.30448 3.60115 3.72630 3.74863 3.82210 3.86799 3.95556 3.99752 4.06594 4.20274 4.32440 4.33016 4.40319 4.41778 4.44925 4.67141 4.73540 4.75707 4.88379 4.99601 5.06844 5.10042 5.22144 5.24786 5.28523 5.42138 5.42941 5.64481 5.80181 6.11318 6.23540 6.37803 6.98458 7.09520 7.82838 8.01733 9.21097 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002828 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.602753 B = 9899.808672 C =11703.982120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.170 3.830 6 H 0.064 0.936 7 N -0.738 5.738 8 C -0.231 4.231 9 H 0.063 0.937 10 C -0.058 4.058 11 N -0.981 5.981 12 Si 0.949 3.051 13 H -0.279 1.279 14 H -0.303 1.303 15 H -0.247 1.247 16 C 0.078 3.922 17 N -0.604 5.604 18 C 0.529 3.471 19 O -0.560 6.560 20 C 0.045 3.955 21 O -0.305 6.305 22 C 0.114 3.886 23 C -0.205 4.205 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.076 4.076 27 C -0.091 4.091 28 Cl -0.073 7.073 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.370 0.630 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 10.593 17.047 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.165 4.165 5 C 0.060 3.940 6 H 0.082 0.918 7 N -0.380 5.380 8 C -0.362 4.362 9 H 0.081 0.919 10 C -0.250 4.250 11 N -0.631 5.631 12 Si 0.776 3.224 13 H -0.205 1.205 14 H -0.230 1.230 15 H -0.171 1.171 16 C -0.047 4.047 17 N -0.339 5.339 18 C 0.318 3.682 19 O -0.439 6.439 20 C -0.032 4.032 21 O -0.218 6.218 22 C 0.068 3.932 23 C -0.224 4.224 24 C -0.091 4.091 25 C -0.158 4.158 26 C -0.094 4.094 27 C -0.118 4.118 28 Cl -0.045 7.045 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.167 0.833 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.470 11.206 17.281 20.887 hybrid contribution 0.753 0.080 -0.901 1.177 sum -2.717 11.286 16.380 20.077 Atomic orbital electron populations 1.22100 0.94252 1.02252 1.02867 1.21613 0.95052 0.96121 0.83551 0.90367 1.22965 1.02853 0.94233 0.96400 1.21372 0.91088 0.92502 0.88996 0.91763 1.42598 1.38983 1.03676 1.52762 1.18997 1.12807 0.83149 1.21257 0.91876 1.25446 1.01221 0.96309 1.02000 1.69874 1.37152 1.09557 1.46499 0.85510 0.79507 0.78830 0.78520 1.20494 1.23024 1.17135 1.23284 0.95125 0.87480 0.98830 1.48479 1.50334 1.30810 1.04235 1.19935 0.80754 0.84745 0.82814 1.90706 1.39662 1.29936 1.83600 1.22586 1.01796 0.98029 0.80824 1.86164 1.70187 1.53164 1.12280 1.19021 0.95560 0.93114 0.85495 1.21564 1.02112 0.96562 1.02165 1.21496 0.97036 0.99216 0.91331 1.21465 0.98833 0.96374 0.99160 1.21247 0.96197 0.95077 0.96880 1.20531 1.03545 0.94912 0.92800 1.98366 1.67453 1.40409 1.98231 0.93283 0.89470 0.92673 0.89567 0.88211 0.79596 0.93400 0.90346 0.90491 0.87039 0.86771 0.83269 0.82303 0.81712 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.06 71.98 0.65 -3.11 16 2 C 0.14 3.45 3.49 45.34 0.16 3.61 16 3 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.05 6.12 31.78 0.19 -2.85 16 5 C 0.17 5.30 3.68 46.38 0.17 5.47 16 6 H 0.06 2.15 8.13 -2.38 -0.02 2.13 16 7 N -0.74 -29.23 5.08 -316.36 -1.61 -30.83 16 8 C -0.23 -11.69 10.47 84.03 0.88 -10.81 16 9 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 10 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 11 N -0.98 -58.95 13.97 21.65 0.30 -58.65 16 12 Si 0.95 41.56 27.73 68.60 1.90 43.46 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 15 H -0.25 -9.52 6.52 99.48 0.65 -8.87 16 16 C 0.08 2.14 6.38 86.85 0.55 2.70 16 17 N -0.60 -16.23 3.08 -788.06 -2.43 -18.66 16 18 C 0.53 15.68 7.71 87.66 0.68 16.35 16 19 O -0.56 -20.73 15.40 15.99 0.25 -20.48 16 20 C 0.05 1.09 4.23 71.23 0.30 1.39 16 21 O -0.31 -8.70 9.13 -73.60 -0.67 -9.37 16 22 C 0.11 2.76 6.68 22.52 0.15 2.91 16 23 C -0.21 -3.84 9.04 22.36 0.20 -3.63 16 24 C -0.07 -1.03 10.04 22.26 0.22 -0.81 16 25 C -0.14 -1.79 10.04 22.28 0.22 -1.57 16 26 C -0.08 -1.23 9.83 22.27 0.22 -1.01 16 27 C -0.09 -2.08 6.33 22.41 0.14 -1.94 16 28 Cl -0.07 -1.85 28.50 -2.72 -0.08 -1.92 16 29 H 0.05 1.39 6.74 -2.39 -0.02 1.37 16 30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.95 8.00 -2.38 -0.02 1.93 16 33 H 0.10 2.16 7.83 -2.39 -0.02 2.14 16 34 H 0.37 14.03 5.57 -92.70 -0.52 13.51 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.08 2.08 7.48 -2.39 -0.02 2.07 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 38 H 0.11 2.26 7.35 -2.38 -0.02 2.24 16 39 H 0.11 2.22 7.68 -2.38 -0.02 2.20 16 40 H 0.15 2.36 6.30 -2.91 -0.02 2.35 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -70.35 370.43 3.34 -67.01 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.46 Total: 25.41 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.21 Total: 4.04 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -3.73 Total: -108.14 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.43 Total: -29.85 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.90 Total: 43.46 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.92 kcal Total: -70.35 3.34 -67.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989784868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.083 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds