Wall clock time and date at job start Tue Mar 31 2020 20:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 117.00191 * 2 1 4 4 C 1.38639 * 120.14236 * 0.20984 * 3 2 1 5 5 C 1.38210 * 120.07424 * 180.27851 * 4 3 2 6 6 Cl 1.73591 * 119.82327 * 179.76212 * 5 4 3 7 7 C 1.38704 * 120.35687 * 359.74131 * 5 4 3 8 8 C 1.37722 * 120.29000 * 0.02562 * 7 5 4 9 9 C 1.39746 * 119.92038 * 359.97382 * 8 7 5 10 10 C 1.47480 * 120.17903 * 179.97438 * 9 8 7 11 11 O 1.21594 * 119.99884 * 135.65821 * 10 9 8 12 12 N 1.34777 * 119.99679 * 315.65367 * 10 9 8 13 13 C 1.47315 * 125.61745 * 354.92986 * 12 10 9 14 14 C 1.54330 * 107.11801 * 181.10841 * 13 12 10 15 15 H 1.08995 * 110.71785 * 263.51607 * 14 13 12 16 16 N 1.46505 * 110.71817 * 140.42508 * 14 13 12 17 17 C 1.36936 * 120.00080 * 88.84457 * 16 14 13 18 18 H 1.08009 * 119.99912 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00268 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00247 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99712 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46914 * 270.00280 * 21 19 17 23 23 H 1.48501 * 109.47299 * 30.00087 * 21 19 17 24 24 H 1.48496 * 109.46927 * 149.99848 * 21 19 17 25 25 C 1.55150 * 103.10371 * 21.97169 * 14 13 12 26 26 H 1.09010 * 111.00409 * 82.66021 * 25 14 13 27 27 C 1.52998 * 111.00809 * 206.47302 * 25 14 13 28 28 C 1.47421 * 125.64732 * 174.69958 * 12 10 9 29 29 H 1.08998 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47146 * 300.00292 * 1 2 3 31 31 H 1.08998 * 109.46795 * 60.00252 * 1 2 3 32 32 H 1.08000 * 119.96817 * 0.02562 * 4 3 2 33 33 H 1.08007 * 119.85601 * 179.97438 * 7 5 4 34 34 H 1.08001 * 120.04047 * 180.02562 * 8 7 5 35 35 H 1.08997 * 110.06610 * 61.67907 * 13 12 10 36 36 H 1.08999 * 109.85025 * 300.41276 * 13 12 10 37 37 H 0.96999 * 120.00170 * 268.83963 * 16 14 13 38 38 H 0.96994 * 120.00072 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46854 * 59.99640 * 27 25 14 40 40 H 1.08991 * 109.47533 * 180.02562 * 27 25 14 41 41 H 1.09001 * 109.47118 * 300.00253 * 27 25 14 42 42 H 1.09005 * 110.36728 * 37.07111 * 28 12 10 43 43 H 1.09002 * 110.46554 * 274.79689 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2928 2.3732 0.0044 5 6 1.9217 3.6039 -0.0014 6 17 0.9735 5.0580 -0.0021 7 6 3.3065 3.6835 -0.0063 8 6 4.0681 2.5361 -0.0059 9 6 3.4446 1.2855 0.0000 10 6 4.2547 0.0531 -0.0001 11 8 3.9624 -0.8667 0.7396 12 7 5.3190 -0.0536 -0.8201 13 6 5.7215 0.9341 -1.8363 14 6 6.9731 0.3734 -2.5440 15 1 7.8815 0.7872 -2.1061 16 7 6.9219 0.6477 -3.9822 17 6 7.4378 1.8165 -4.4752 18 1 7.8821 2.5363 -3.8036 19 6 7.3897 2.0761 -5.8379 20 7 7.8851 3.1997 -6.3117 21 14 6.6219 0.8308 -6.9995 22 1 7.6646 -0.1167 -7.4688 23 1 5.5562 0.0810 -6.2873 24 1 6.0347 1.5381 -8.1656 25 6 6.8777 -1.1511 -2.2721 26 1 6.2107 -1.6343 -2.9861 27 6 8.2631 -1.8000 -2.2945 28 6 6.2752 -1.1754 -0.8452 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2141 2.3188 0.0082 33 1 3.7895 4.6495 -0.0112 34 1 5.1461 2.6027 -0.0092 35 1 5.9597 1.8850 -1.3598 36 1 4.9170 1.0704 -2.5590 37 1 6.5226 0.0014 -4.5853 38 1 7.8518 3.3810 -7.2640 39 1 8.8892 -1.3464 -1.5260 40 1 8.1671 -2.8684 -2.1016 41 1 8.7201 -1.6473 -3.2722 42 1 5.7583 -2.1185 -0.6677 43 1 7.0572 -1.0263 -0.1007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055016419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:04 Heat of formation + Delta-G solvation = -28.549769 kcal Electronic energy + Delta-G solvation = -27287.701468 eV Core-core repulsion = 23359.855653 eV Total energy + Delta-G solvation = -3927.845815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80622 -39.47022 -37.86813 -37.50723 -36.47965 -34.20644 -32.73150 -31.31664 -30.92900 -30.51801 -27.95971 -27.66411 -26.37058 -24.22227 -23.28777 -22.52018 -21.33784 -20.21009 -19.78224 -18.27149 -17.60850 -17.16663 -16.84096 -16.07788 -15.83912 -15.66352 -15.41737 -14.69254 -14.47950 -14.27853 -14.00702 -13.63332 -13.51395 -13.29723 -13.21406 -12.82937 -12.65625 -12.43948 -12.21666 -12.13656 -12.05032 -11.71249 -11.60932 -11.43539 -11.21029 -11.18380 -11.03490 -10.80559 -10.65635 -10.39525 -10.03715 -9.80650 -9.67113 -9.17940 -9.03956 -8.52721 -8.35359 -7.42802 -5.87417 -3.25203 0.59806 1.08117 1.78994 2.74055 2.96833 3.07883 3.31122 3.34150 3.39958 3.51468 4.44120 4.45176 4.50134 4.68271 4.79379 4.88009 4.90036 4.97114 5.01898 5.04146 5.18260 5.24394 5.32150 5.42491 5.50234 5.64590 5.67437 5.69794 5.77381 5.85841 5.89646 5.97767 6.06957 6.10788 6.23983 6.29982 6.35933 6.45473 6.49303 6.73570 7.03488 7.68955 7.86603 8.30155 8.31274 9.07732 9.80274 9.98391 11.30189 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.003849 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.534609 B = 7272.040600 C = 8879.929545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.291 6.291 3 C 0.188 3.812 4 C -0.212 4.212 5 C 0.024 3.976 6 Cl -0.063 7.063 7 C -0.151 4.151 8 C -0.032 4.032 9 C -0.153 4.153 10 C 0.580 3.420 11 O -0.534 6.534 12 N -0.611 5.611 13 C 0.070 3.930 14 C 0.182 3.818 15 H 0.077 0.923 16 N -0.736 5.736 17 C -0.253 4.253 18 H 0.093 0.907 19 C 0.012 3.988 20 N -0.928 5.928 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.290 1.290 25 C -0.118 4.118 26 H 0.081 0.919 27 C -0.134 4.134 28 C 0.116 3.884 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 -3.313 14.174 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.202 6.202 3 C 0.140 3.860 4 C -0.231 4.231 5 C -0.003 4.003 6 Cl -0.034 7.034 7 C -0.169 4.169 8 C -0.050 4.050 9 C -0.157 4.157 10 C 0.369 3.631 11 O -0.411 6.411 12 N -0.344 5.344 13 C -0.055 4.055 14 C 0.070 3.930 15 H 0.095 0.905 16 N -0.377 5.377 17 C -0.382 4.382 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.575 5.575 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.203 1.203 24 H -0.217 1.217 25 C -0.138 4.138 26 H 0.099 0.901 27 C -0.192 4.192 28 C -0.007 4.007 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.076 -3.629 14.543 19.248 hybrid contribution -1.048 -0.295 -1.089 1.540 sum -13.124 -3.924 13.454 19.200 Atomic orbital electron populations 1.23183 0.78099 1.04510 1.01487 1.86246 1.21445 1.25399 1.87121 1.18708 0.90577 0.84393 0.92355 1.20984 1.00797 0.90300 1.11035 1.20802 0.91960 0.87221 1.00282 1.98384 1.72359 1.36094 1.96568 1.20927 0.91243 0.99891 1.04876 1.21269 1.00793 0.89649 0.93329 1.19313 0.90715 0.94602 1.11061 1.17517 0.79312 0.86338 0.79973 1.90776 1.69334 1.39782 1.41233 1.48480 1.26410 1.23081 1.36468 1.23472 1.00521 0.91618 0.89917 1.21230 0.94717 0.91346 0.85670 0.90486 1.42719 1.71792 1.21970 1.01206 1.19058 1.31944 0.94903 0.92305 0.88948 1.24654 1.00397 0.96836 0.96592 1.69687 1.50418 1.24162 1.13240 0.86615 0.79386 0.81455 0.81445 1.20908 1.20305 1.21663 1.22674 0.97663 0.97879 0.95555 0.90074 1.21622 0.95254 0.99429 1.02914 1.22251 0.91255 0.90107 0.97084 0.87791 0.92324 0.92324 0.83877 0.83887 0.83280 0.91531 0.90841 0.80258 0.92900 0.92474 0.93039 0.91415 0.90729 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -4.04 9.41 -31.77 -0.30 -4.33 16 3 C 0.19 2.59 6.67 -38.71 -0.26 2.33 16 4 C -0.21 -2.43 8.80 -39.44 -0.35 -2.77 16 5 C 0.02 0.28 6.32 -39.42 -0.25 0.03 16 6 Cl -0.06 -0.65 28.94 -51.86 -1.50 -2.15 16 7 C -0.15 -1.73 9.80 -39.60 -0.39 -2.12 16 8 C -0.03 -0.40 8.42 -39.21 -0.33 -0.73 16 9 C -0.15 -2.26 5.40 -104.84 -0.57 -2.83 16 10 C 0.58 9.74 7.17 -12.49 -0.09 9.65 16 11 O -0.53 -10.38 16.57 -7.84 -0.13 -10.51 16 12 N -0.61 -9.54 3.33 -171.53 -0.57 -10.11 16 13 C 0.07 1.13 5.66 -2.90 -0.02 1.12 16 14 C 0.18 3.13 3.06 -66.09 -0.20 2.93 16 15 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 16 N -0.74 -15.83 4.97 -51.65 -0.26 -16.09 16 17 C -0.25 -6.56 10.45 -15.06 -0.16 -6.72 16 18 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 19 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 20 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 21 Si 0.88 21.11 27.74 -169.99 -4.71 16.40 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 C -0.12 -1.70 3.26 -88.48 -0.29 -1.99 16 26 H 0.08 1.23 8.01 -51.92 -0.42 0.82 16 27 C -0.13 -1.71 9.31 37.16 0.35 -1.36 16 28 C 0.12 1.63 6.40 -2.53 -0.02 1.61 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 32 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 33 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.15 1.71 6.11 -52.49 -0.32 1.39 16 35 H 0.07 1.00 5.72 -51.93 -0.30 0.70 16 36 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 37 H 0.36 7.87 5.60 -40.82 -0.23 7.64 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 43 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.18 367.68 -8.58 -40.76 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.75 Total: 6.97 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.67 Total: 0.56 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.05 Total: -53.23 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.43 Total: -14.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.18 -8.58 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.207 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds