Wall clock time and date at job start Tue Mar 31 2020 20:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35651 * 116.99924 * 2 1 4 4 C 1.38641 * 120.14817 * 359.97438 * 3 2 1 5 5 C 1.38200 * 120.07943 * 180.02562 * 4 3 2 6 6 Cl 1.73594 * 119.82221 * 179.97438 * 5 4 3 7 7 C 1.38701 * 120.35771 * 0.02562 * 5 4 3 8 8 C 1.37723 * 120.29036 * 359.97438 * 7 5 4 9 9 C 1.39751 * 119.91862 * 359.72771 * 8 7 5 10 10 C 1.47477 * 120.17801 * 180.29100 * 9 8 7 11 11 O 1.21590 * 120.00292 * 216.69549 * 10 9 8 12 12 N 1.34785 * 119.99645 * 36.70061 * 10 9 8 13 13 C 1.47026 * 125.64435 * 185.28534 * 12 10 9 14 14 C 1.54318 * 107.26687 * 181.02332 * 13 12 10 15 15 H 1.09007 * 110.71969 * 263.82985 * 14 13 12 16 16 C 1.53003 * 110.71822 * 140.73816 * 14 13 12 17 17 C 1.55154 * 102.94726 * 22.19572 * 14 13 12 18 18 H 1.09000 * 111.00798 * 206.38661 * 17 14 13 19 19 N 1.46506 * 111.00167 * 82.57038 * 17 14 13 20 20 C 1.36932 * 119.99788 * 155.00525 * 19 17 14 21 21 H 1.08002 * 120.00486 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00221 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99616 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46894 * 59.99849 * 24 22 20 26 26 H 1.48497 * 109.47028 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46851 * 299.99932 * 24 22 20 28 28 C 1.47426 * 125.65027 * 4.98089 * 12 10 9 29 29 H 1.09005 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47118 * 300.00523 * 1 2 3 31 31 H 1.09008 * 109.46705 * 60.00645 * 1 2 3 32 32 H 1.08003 * 119.95786 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.85510 * 179.97438 * 7 5 4 34 34 H 1.08004 * 120.04200 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.88185 * 300.44095 * 13 12 10 36 36 H 1.08999 * 109.87550 * 61.45289 * 13 12 10 37 37 H 1.09002 * 109.47030 * 61.45757 * 16 14 13 38 38 H 1.09001 * 109.46999 * 181.45257 * 16 14 13 39 39 H 1.08995 * 109.47264 * 301.45062 * 16 14 13 40 40 H 0.96996 * 119.99840 * 334.99923 * 19 17 14 41 41 H 0.96996 * 119.99968 * 180.02562 * 23 22 20 42 42 H 1.08994 * 110.36783 * 274.74940 * 28 12 10 43 43 H 1.09001 * 110.36319 * 37.06797 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9216 3.6040 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3063 3.6836 -0.0016 8 6 4.0681 2.5362 -0.0011 9 6 3.4445 1.2855 0.0057 10 6 4.2546 0.0532 0.0128 11 8 3.8833 -0.9221 -0.6110 12 7 5.4067 0.0082 0.7110 13 6 6.3616 -1.1097 0.7172 14 6 7.5099 -0.7260 1.6742 15 1 8.3476 -0.3017 1.1207 16 6 7.9618 -1.9383 2.4909 17 6 6.8574 0.3443 2.5884 18 1 7.6076 1.0264 2.9885 19 7 6.0930 -0.2836 3.6691 20 6 5.8756 0.3956 4.8381 21 1 6.2680 1.3940 4.9636 22 6 5.1519 -0.1994 5.8623 23 7 4.6741 -1.4163 5.7095 24 14 4.8559 0.7268 7.4573 25 1 4.1103 1.9788 7.1716 26 1 4.0621 -0.1215 8.3822 27 1 6.1596 1.0594 8.0857 28 6 5.9210 1.0742 1.5899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2141 2.3188 -0.0014 33 1 3.7893 4.6496 -0.0024 34 1 5.1461 2.6028 -0.0019 35 1 5.8699 -2.0153 1.0725 36 1 6.7515 -1.2697 -0.2880 37 1 8.3357 -2.7105 1.8185 38 1 8.7542 -1.6392 3.1770 39 1 7.1176 -2.3289 3.0590 40 1 5.7409 -1.1803 3.5565 41 1 4.1681 -1.8320 6.4250 42 1 6.4799 1.8080 1.0092 43 1 5.1007 1.5556 2.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055016421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:07 Heat of formation + Delta-G solvation = -28.987202 kcal Electronic energy + Delta-G solvation = -27701.713685 eV Core-core repulsion = 23773.848901 eV Total energy + Delta-G solvation = -3927.864784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66028 -39.32360 -37.74284 -37.34873 -36.39823 -33.86681 -32.54256 -31.08597 -30.41366 -30.38944 -27.78867 -27.48469 -26.12263 -24.07995 -23.49459 -22.37737 -21.77308 -19.70803 -19.21682 -18.08676 -17.55619 -16.84282 -16.56365 -16.04780 -15.68666 -15.43467 -15.18734 -14.69434 -14.34676 -14.07038 -13.77397 -13.73328 -13.41136 -13.07096 -12.92925 -12.82039 -12.55488 -12.14238 -12.03875 -11.90713 -11.82295 -11.52427 -11.41133 -11.16564 -11.10048 -10.95513 -10.90169 -10.69517 -10.43432 -10.29800 -9.97246 -9.66389 -9.54529 -9.08640 -8.98373 -8.39685 -8.15103 -7.02634 -5.82173 -3.12101 0.69919 1.19085 1.85164 2.93647 3.15300 3.29063 3.40031 3.44869 3.46007 3.73543 4.52320 4.55321 4.63681 4.83394 4.86532 5.04631 5.07786 5.10565 5.17493 5.30934 5.35169 5.36983 5.46717 5.57026 5.63915 5.75984 5.81385 5.95091 5.96344 5.99727 6.06145 6.18152 6.23825 6.35363 6.37623 6.39871 6.53116 6.64032 6.80004 6.96879 7.21941 7.63640 7.93108 8.35255 8.54572 9.47099 10.02590 10.37102 11.39677 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.004191 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.057999 B = 6679.598922 C = 7880.979078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.283 6.283 3 C 0.194 3.806 4 C -0.213 4.213 5 C 0.024 3.976 6 Cl -0.067 7.067 7 C -0.157 4.157 8 C -0.035 4.035 9 C -0.149 4.149 10 C 0.578 3.422 11 O -0.533 6.533 12 N -0.599 5.599 13 C 0.118 3.882 14 C -0.115 4.115 15 H 0.079 0.921 16 C -0.132 4.132 17 C 0.172 3.828 18 H 0.075 0.925 19 N -0.707 5.707 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.064 3.936 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.056 0.944 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 8.811 -13.564 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.194 6.194 3 C 0.146 3.854 4 C -0.232 4.232 5 C -0.003 4.003 6 Cl -0.038 7.038 7 C -0.176 4.176 8 C -0.054 4.054 9 C -0.153 4.153 10 C 0.366 3.634 11 O -0.411 6.411 12 N -0.331 5.331 13 C -0.004 4.004 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.190 4.190 17 C 0.059 3.941 18 H 0.093 0.907 19 N -0.347 5.347 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.062 4.062 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.223 0.777 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.945 8.278 -13.748 16.316 hybrid contribution -0.843 0.615 0.958 1.417 sum -3.788 8.893 -12.790 16.032 Atomic orbital electron populations 1.23195 0.78252 1.04603 1.01292 1.86320 1.21279 1.25106 1.86685 1.18764 0.90709 0.84473 0.91485 1.20992 1.00840 0.90320 1.11092 1.20769 0.91892 0.87066 1.00536 1.98375 1.72500 1.36271 1.96631 1.20848 0.91230 0.99627 1.05868 1.21301 1.00705 0.89755 0.93625 1.19363 0.90772 0.94646 1.10493 1.17454 0.79628 0.86903 0.79378 1.90774 1.69676 1.36130 1.44549 1.48185 1.20294 1.19392 1.45264 1.21948 0.89428 0.90189 0.98867 1.22540 0.96296 0.98161 0.96493 0.90299 1.21606 1.02320 0.95984 0.99074 1.21392 0.92033 0.92826 0.87847 0.90748 1.42354 1.62524 1.17717 1.12081 1.19177 1.28694 0.98346 0.91619 0.91063 1.24741 1.00578 0.96527 0.98519 1.69653 1.40705 1.13730 1.33394 0.86304 0.77767 0.78761 0.83546 1.21261 1.21725 1.21164 1.23639 0.99852 0.90402 0.92290 0.87723 0.92307 0.92488 0.83900 0.84214 0.83460 0.91373 0.92310 0.93774 0.92341 0.90961 0.77710 0.93350 0.92594 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.28 -4.69 9.16 -36.00 -0.33 -5.02 16 3 C 0.19 3.07 6.66 -38.70 -0.26 2.82 16 4 C -0.21 -2.75 8.80 -39.45 -0.35 -3.10 16 5 C 0.02 0.30 6.32 -39.42 -0.25 0.05 16 6 Cl -0.07 -0.71 28.94 -51.86 -1.50 -2.21 16 7 C -0.16 -1.83 9.80 -39.60 -0.39 -2.22 16 8 C -0.04 -0.46 8.17 -39.20 -0.32 -0.78 16 9 C -0.15 -2.45 5.42 -104.84 -0.57 -3.02 16 10 C 0.58 11.05 7.35 -12.49 -0.09 10.96 16 11 O -0.53 -11.77 16.32 -12.06 -0.20 -11.97 16 12 N -0.60 -10.55 3.32 -171.63 -0.57 -11.12 16 13 C 0.12 1.96 6.46 -3.07 -0.02 1.94 16 14 C -0.11 -1.74 3.40 -88.79 -0.30 -2.05 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.13 -2.08 8.81 37.16 0.33 -1.76 16 17 C 0.17 3.08 3.47 -65.66 -0.23 2.85 16 18 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 19 N -0.71 -16.48 4.58 -51.23 -0.23 -16.72 16 20 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 24 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.06 1.05 4.92 -2.41 -0.01 1.03 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.06 0.50 7.66 -51.92 -0.40 0.10 16 32 H 0.14 1.51 6.30 -52.48 -0.33 1.18 16 33 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.15 1.65 5.77 -52.48 -0.30 1.35 16 35 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.38 6.36 -51.93 -0.33 1.04 16 40 H 0.39 9.95 6.34 -40.82 -0.26 9.69 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 43 H 0.08 1.50 7.26 -51.93 -0.38 1.12 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -32.53 366.21 -8.99 -41.52 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.66 Total: 8.84 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.71 Total: 1.06 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.08 Total: -54.49 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.53 Total: -16.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.53 -8.99 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.529 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds