Wall clock time and date at job start Tue Mar 31 2020 20:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35651 * 116.99924 * 2 1 4 4 C 1.38641 * 120.14817 * 359.97438 * 3 2 1 5 5 C 1.38200 * 120.07943 * 180.02562 * 4 3 2 6 6 Cl 1.73594 * 119.82221 * 179.97438 * 5 4 3 7 7 C 1.38701 * 120.35771 * 0.02562 * 5 4 3 8 8 C 1.37723 * 120.29036 * 359.97438 * 7 5 4 9 9 C 1.39751 * 119.91862 * 359.72771 * 8 7 5 10 10 C 1.47477 * 120.17801 * 180.29100 * 9 8 7 11 11 O 1.21590 * 120.00292 * 216.69549 * 10 9 8 12 12 N 1.34785 * 119.99645 * 36.70061 * 10 9 8 13 13 C 1.47026 * 125.64435 * 185.28534 * 12 10 9 14 14 C 1.54318 * 107.26687 * 181.02332 * 13 12 10 15 15 H 1.09007 * 110.71969 * 263.82985 * 14 13 12 16 16 C 1.53003 * 110.71822 * 140.73816 * 14 13 12 17 17 C 1.55154 * 102.94726 * 22.19572 * 14 13 12 18 18 H 1.09000 * 111.00798 * 206.38661 * 17 14 13 19 19 N 1.46506 * 111.00167 * 82.57038 * 17 14 13 20 20 C 1.36932 * 119.99788 * 155.00525 * 19 17 14 21 21 H 1.08002 * 120.00486 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00221 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99616 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46894 * 59.99849 * 24 22 20 26 26 H 1.48497 * 109.47028 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46851 * 299.99932 * 24 22 20 28 28 C 1.47426 * 125.65027 * 4.98089 * 12 10 9 29 29 H 1.09005 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47118 * 300.00523 * 1 2 3 31 31 H 1.09008 * 109.46705 * 60.00645 * 1 2 3 32 32 H 1.08003 * 119.95786 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.85510 * 179.97438 * 7 5 4 34 34 H 1.08004 * 120.04200 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.88185 * 300.44095 * 13 12 10 36 36 H 1.08999 * 109.87550 * 61.45289 * 13 12 10 37 37 H 1.09002 * 109.47030 * 61.45757 * 16 14 13 38 38 H 1.09001 * 109.46999 * 181.45257 * 16 14 13 39 39 H 1.08995 * 109.47264 * 301.45062 * 16 14 13 40 40 H 0.96996 * 119.99840 * 334.99923 * 19 17 14 41 41 H 0.96996 * 119.99968 * 180.02562 * 23 22 20 42 42 H 1.08994 * 110.36783 * 274.74940 * 28 12 10 43 43 H 1.09001 * 110.36319 * 37.06797 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9216 3.6040 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3063 3.6836 -0.0016 8 6 4.0681 2.5362 -0.0011 9 6 3.4445 1.2855 0.0057 10 6 4.2546 0.0532 0.0128 11 8 3.8833 -0.9221 -0.6110 12 7 5.4067 0.0082 0.7110 13 6 6.3616 -1.1097 0.7172 14 6 7.5099 -0.7260 1.6742 15 1 8.3476 -0.3017 1.1207 16 6 7.9618 -1.9383 2.4909 17 6 6.8574 0.3443 2.5884 18 1 7.6076 1.0264 2.9885 19 7 6.0930 -0.2836 3.6691 20 6 5.8756 0.3956 4.8381 21 1 6.2680 1.3940 4.9636 22 6 5.1519 -0.1994 5.8623 23 7 4.6741 -1.4163 5.7095 24 14 4.8559 0.7268 7.4573 25 1 4.1103 1.9788 7.1716 26 1 4.0621 -0.1215 8.3822 27 1 6.1596 1.0594 8.0857 28 6 5.9210 1.0742 1.5899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2141 2.3188 -0.0014 33 1 3.7893 4.6496 -0.0024 34 1 5.1461 2.6028 -0.0019 35 1 5.8699 -2.0153 1.0725 36 1 6.7515 -1.2697 -0.2880 37 1 8.3357 -2.7105 1.8185 38 1 8.7542 -1.6392 3.1770 39 1 7.1176 -2.3289 3.0590 40 1 5.7409 -1.1803 3.5565 41 1 4.1681 -1.8320 6.4250 42 1 6.4799 1.8080 1.0092 43 1 5.1007 1.5556 2.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055016421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:06 Heat of formation + Delta-G solvation = -48.833190 kcal Electronic energy + Delta-G solvation = -27702.574271 eV Core-core repulsion = 23773.848901 eV Total energy + Delta-G solvation = -3928.725371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82216 -40.60141 -38.84723 -38.69681 -37.36260 -35.64309 -34.00981 -32.45428 -31.90634 -31.39925 -29.35211 -28.44890 -27.38630 -25.82998 -24.84193 -23.38972 -23.11033 -20.95766 -20.61550 -19.40926 -19.12078 -18.18827 -17.68554 -17.40364 -16.81959 -16.58108 -16.43371 -16.34092 -15.64405 -15.50051 -15.19800 -14.88853 -14.63381 -14.40554 -14.34590 -14.04868 -13.79961 -13.44901 -13.26520 -13.03720 -12.94377 -12.85711 -12.83020 -12.74806 -12.40493 -12.24335 -12.18785 -12.05791 -11.98276 -11.80879 -11.45693 -11.34906 -11.03515 -10.88234 -10.05655 -9.68554 -9.37608 -8.91687 -7.89964 -5.17695 -0.36668 0.18951 0.91392 1.48918 1.50949 1.56565 1.64221 2.02175 2.19046 2.57134 2.58825 3.39800 3.42511 3.58505 3.76511 3.89432 3.91972 3.96544 3.99428 4.12975 4.20394 4.27804 4.30859 4.43943 4.45412 4.61648 4.66476 4.69408 4.77663 4.78661 4.90840 4.98333 5.02774 5.04438 5.05315 5.24565 5.28835 5.42340 5.46363 5.56177 5.63956 6.20494 6.30733 6.55262 7.13949 7.37765 8.14344 8.35854 9.33479 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009220 B = 0.004191 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.057999 B = 6679.598922 C = 7880.979078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.172 3.828 4 C -0.211 4.211 5 C 0.023 3.977 6 Cl -0.048 7.048 7 C -0.149 4.149 8 C -0.029 4.029 9 C -0.183 4.183 10 C 0.569 3.431 11 O -0.578 6.578 12 N -0.601 5.601 13 C 0.115 3.885 14 C -0.098 4.098 15 H 0.123 0.877 16 C -0.127 4.127 17 C 0.158 3.842 18 H 0.093 0.907 19 N -0.721 5.721 20 C -0.232 4.232 21 H 0.086 0.914 22 C -0.076 4.076 23 N -0.972 5.972 24 Si 0.966 3.034 25 H -0.280 1.280 26 H -0.305 1.305 27 H -0.274 1.274 28 C 0.074 3.926 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.371 0.629 41 H 0.247 0.753 42 H 0.106 0.894 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 12.154 -14.483 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.124 3.876 4 C -0.231 4.231 5 C -0.004 4.004 6 Cl -0.019 7.019 7 C -0.168 4.168 8 C -0.048 4.048 9 C -0.187 4.187 10 C 0.359 3.641 11 O -0.460 6.460 12 N -0.332 5.332 13 C -0.007 4.007 14 C -0.117 4.117 15 H 0.141 0.859 16 C -0.185 4.185 17 C 0.047 3.953 18 H 0.111 0.889 19 N -0.360 5.360 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.268 4.268 23 N -0.623 5.623 24 Si 0.796 3.204 25 H -0.206 1.206 26 H -0.232 1.232 27 H -0.200 1.200 28 C -0.051 4.051 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.204 0.796 41 H 0.055 0.945 42 H 0.124 0.876 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.631 11.693 -14.688 18.845 hybrid contribution -1.236 -0.357 1.153 1.728 sum -2.867 11.337 -13.534 17.886 Atomic orbital electron populations 1.23471 0.76049 1.05777 1.02806 1.86261 1.23864 1.26332 1.87068 1.19048 0.90977 0.85098 0.92497 1.21162 1.01724 0.89752 1.10421 1.20967 0.92548 0.87462 0.99440 1.98386 1.72126 1.34949 1.96441 1.21202 0.91016 1.00417 1.04161 1.21502 1.01765 0.88784 0.92700 1.19464 0.91134 0.94726 1.13366 1.17996 0.79809 0.87445 0.78806 1.90727 1.70665 1.37981 1.46600 1.48311 1.20177 1.19917 1.44840 1.22021 0.89546 0.88950 1.00185 1.22530 0.96692 0.97028 0.95497 0.85853 1.21534 1.00668 0.97027 0.99289 1.21767 0.92247 0.93971 0.87282 0.88875 1.42551 1.63172 1.17215 1.13013 1.19651 1.26203 0.98471 0.92037 0.89618 1.25493 1.01969 0.97433 1.01874 1.69836 1.42846 1.15680 1.33937 0.85319 0.77741 0.77375 0.79991 1.20608 1.23173 1.19994 1.23583 0.98969 0.90473 0.92077 0.86904 0.91384 0.90233 0.81994 0.81054 0.81464 0.94772 0.90353 0.91385 0.92065 0.95141 0.79639 0.94472 0.87589 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -11.18 9.16 -73.07 -0.67 -11.85 16 3 C 0.17 5.50 6.66 22.84 0.15 5.65 16 4 C -0.21 -5.21 8.80 22.36 0.20 -5.01 16 5 C 0.02 0.50 6.32 22.37 0.14 0.65 16 6 Cl -0.05 -0.89 28.94 -2.72 -0.08 -0.96 16 7 C -0.15 -3.02 9.80 22.26 0.22 -2.81 16 8 C -0.03 -0.70 8.17 22.51 0.18 -0.51 16 9 C -0.18 -6.01 5.42 -20.01 -0.11 -6.12 16 10 C 0.57 22.23 7.35 86.68 0.64 22.86 16 11 O -0.58 -26.78 16.32 12.59 0.21 -26.58 16 12 N -0.60 -20.87 3.32 -815.17 -2.71 -23.58 16 13 C 0.12 3.77 6.46 86.73 0.56 4.33 16 14 C -0.10 -2.75 3.40 -9.61 -0.03 -2.78 16 15 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 16 C -0.13 -3.92 8.81 71.98 0.63 -3.28 16 17 C 0.16 5.32 3.47 46.46 0.16 5.48 16 18 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 19 N -0.72 -33.77 4.58 -316.01 -1.45 -35.21 16 20 C -0.23 -12.02 9.96 84.03 0.84 -11.19 16 21 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 23 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 24 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.07 2.23 4.92 86.93 0.43 2.65 16 29 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 31 H 0.08 1.35 7.66 -2.38 -0.02 1.33 16 32 H 0.16 3.18 6.30 -2.91 -0.02 3.16 16 33 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.17 3.14 5.77 -2.91 -0.02 3.13 16 35 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.03 1.19 6.36 -2.39 -0.02 1.17 16 40 H 0.37 19.82 6.34 -92.71 -0.59 19.23 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.11 2.19 6.92 -2.39 -0.02 2.17 16 43 H 0.06 2.12 7.26 -2.39 -0.02 2.10 16 Total: -1.00 -75.17 366.21 3.66 -71.51 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.46 Total: 31.22 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.59 Total: 7.55 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -3.87 Total: -118.17 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.46 Total: -38.43 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.96 kcal Total: -75.17 3.66 -71.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.678 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds