Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35660 * 116.99932 * 2 1 4 4 C 1.38643 * 120.14273 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.07295 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 119.81988 * 180.02562 * 5 4 3 7 7 C 1.38704 * 120.35964 * 359.67447 * 5 4 3 8 8 C 1.37729 * 120.28546 * 0.60514 * 7 5 4 9 9 C 1.39743 * 119.92054 * 359.42327 * 8 7 5 10 10 C 1.47475 * 120.17470 * 180.29649 * 9 8 7 11 11 O 1.21606 * 119.99728 * 144.02353 * 10 9 8 12 12 N 1.34772 * 120.00582 * 324.02859 * 10 9 8 13 13 C 1.47019 * 125.64984 * 183.77318 * 12 10 9 14 14 C 1.54339 * 107.26447 * 178.84775 * 13 12 10 15 15 H 1.08993 * 110.51942 * 96.45330 * 14 13 12 16 16 C 1.53001 * 111.00150 * 219.60371 * 14 13 12 17 17 C 1.55158 * 103.01834 * 338.13895 * 14 13 12 18 18 H 1.09008 * 111.00423 * 277.22915 * 17 14 13 19 19 N 1.46500 * 111.00285 * 153.38780 * 17 14 13 20 20 C 1.36932 * 120.00323 * 161.35108 * 19 17 14 21 21 H 1.08004 * 119.99981 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00101 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99598 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 120.00121 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46889 * 89.99953 * 24 22 20 26 26 H 1.48498 * 109.47399 * 209.99964 * 24 22 20 27 27 H 1.48501 * 109.47129 * 329.99842 * 24 22 20 28 28 C 1.47424 * 125.64380 * 4.07560 * 12 10 9 29 29 H 1.09002 * 109.47114 * 300.00001 * 1 2 3 30 30 H 1.08999 * 109.47643 * 59.99988 * 1 2 3 31 31 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.96290 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.85606 * 180.32769 * 7 5 4 34 34 H 1.07998 * 120.03383 * 179.69909 * 8 7 5 35 35 H 1.09000 * 109.88283 * 298.38853 * 13 12 10 36 36 H 1.09000 * 109.88418 * 59.55437 * 13 12 10 37 37 H 1.08997 * 109.47483 * 173.77930 * 16 14 13 38 38 H 1.09008 * 109.46892 * 293.78173 * 16 14 13 39 39 H 1.09001 * 109.47385 * 53.77219 * 16 14 13 40 40 H 0.97005 * 120.00107 * 341.34128 * 19 17 14 41 41 H 0.96995 * 119.99495 * 179.97438 * 23 22 20 42 42 H 1.09004 * 110.36932 * 322.93433 * 28 12 10 43 43 H 1.09001 * 110.36864 * 85.15195 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3734 0.0005 5 6 1.9215 3.6040 0.0000 6 17 0.9732 5.0581 0.0014 7 6 3.3063 3.6836 0.0057 8 6 4.0680 2.5362 -0.0006 9 6 3.4445 1.2856 -0.0006 10 6 4.2547 0.0533 -0.0007 11 8 3.8766 -0.9229 0.6180 12 7 5.4141 0.0091 -0.6863 13 6 6.2767 -1.1720 -0.8357 14 6 7.4706 -0.7581 -1.7219 15 1 8.3280 -0.4874 -1.1058 16 6 7.8406 -1.8749 -2.7001 17 6 6.9283 0.4807 -2.4827 18 1 6.3410 0.1800 -3.3504 19 7 8.0200 1.3754 -2.8748 20 6 7.8230 2.3047 -3.8611 21 1 6.8629 2.3777 -4.3503 22 6 8.8574 3.1528 -4.2323 23 7 8.6680 4.0457 -5.1807 24 14 10.5177 3.0271 -3.3858 25 1 11.3762 2.0636 -4.1206 26 1 11.1694 4.3614 -3.3735 27 1 10.3275 2.5563 -1.9903 28 6 6.0306 1.1388 -1.4054 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2140 2.3188 0.0005 33 1 3.7893 4.6497 0.0106 34 1 5.1459 2.6030 -0.0010 35 1 6.6332 -1.4968 0.1418 36 1 5.7221 -1.9777 -1.3168 37 1 8.6097 -1.5180 -3.3851 38 1 8.2184 -2.7336 -2.1451 39 1 6.9572 -2.1689 -3.2669 40 1 8.8825 1.3098 -2.4356 41 1 9.3906 4.6385 -5.4398 42 1 5.2629 1.7537 -1.8753 43 1 6.6322 1.7397 -0.7234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055016424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -27.507484 kcal Electronic energy + Delta-G solvation = -27269.875470 eV Core-core repulsion = 23342.074852 eV Total energy + Delta-G solvation = -3927.800619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82189 -39.48713 -37.84280 -37.50693 -36.47122 -34.23115 -32.78762 -31.33290 -30.90444 -30.48738 -27.98036 -27.66054 -26.35834 -24.28316 -23.28633 -22.49383 -21.32529 -20.25983 -19.78375 -18.18209 -17.61930 -17.17341 -16.70341 -16.27109 -15.87190 -15.56672 -15.38634 -14.61823 -14.48005 -14.20474 -13.95368 -13.59851 -13.48980 -13.34930 -13.27075 -12.87886 -12.71512 -12.54870 -12.15285 -12.10108 -11.99971 -11.82904 -11.52841 -11.44297 -11.23110 -11.14270 -11.03424 -10.76717 -10.67765 -10.41470 -10.01961 -9.79480 -9.67646 -9.16131 -9.04679 -8.55273 -8.34309 -7.42972 -5.87977 -3.26332 0.59191 1.10034 1.80490 2.77227 2.98975 3.08023 3.29412 3.32477 3.39137 3.55710 4.44664 4.47647 4.48988 4.68757 4.81727 4.87825 4.91047 4.96617 4.97060 5.06764 5.20680 5.28592 5.34552 5.37826 5.48971 5.64252 5.68384 5.69039 5.73545 5.85171 5.92750 6.01414 6.04690 6.09617 6.24610 6.27228 6.31838 6.41634 6.49491 6.71161 7.05760 7.68802 7.86188 8.30159 8.32499 9.07014 9.79017 9.97057 11.29588 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.003759 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.994639 B = 7446.397918 C = 9531.258051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.287 6.287 3 C 0.191 3.809 4 C -0.214 4.214 5 C 0.026 3.974 6 Cl -0.063 7.063 7 C -0.152 4.152 8 C -0.035 4.035 9 C -0.157 4.157 10 C 0.578 3.422 11 O -0.532 6.532 12 N -0.610 5.610 13 C 0.119 3.881 14 C -0.117 4.117 15 H 0.082 0.918 16 C -0.136 4.136 17 C 0.182 3.818 18 H 0.075 0.925 19 N -0.735 5.735 20 C -0.253 4.253 21 H 0.092 0.908 22 C 0.012 3.988 23 N -0.928 5.928 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.078 0.922 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -5.326 11.439 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.198 6.198 3 C 0.142 3.858 4 C -0.234 4.234 5 C -0.001 4.001 6 Cl -0.034 7.034 7 C -0.171 4.171 8 C -0.053 4.053 9 C -0.161 4.161 10 C 0.366 3.634 11 O -0.410 6.410 12 N -0.344 5.344 13 C -0.003 4.003 14 C -0.137 4.137 15 H 0.101 0.899 16 C -0.193 4.193 17 C 0.070 3.930 18 H 0.093 0.907 19 N -0.376 5.376 20 C -0.383 4.383 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.058 4.058 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.126 -5.769 11.588 19.160 hybrid contribution 0.861 0.561 0.512 1.148 sum -13.265 -5.207 12.100 18.695 Atomic orbital electron populations 1.23185 0.78257 1.04478 1.01440 1.86287 1.21263 1.25237 1.86985 1.18715 0.90554 0.84408 0.92083 1.20977 1.00780 0.90279 1.11332 1.20827 0.91966 0.87220 1.00069 1.98385 1.72343 1.36132 1.96550 1.20960 0.91215 1.00003 1.04918 1.21526 1.01274 0.89743 0.92805 1.19308 0.90674 0.94512 1.11561 1.17524 0.79684 0.87102 0.79041 1.90785 1.70461 1.36595 1.43166 1.48363 1.21149 1.13463 1.51385 1.21954 0.90717 0.88095 0.99567 1.22529 0.96988 0.97158 0.97011 0.89946 1.21682 1.02048 0.96907 0.98700 1.21343 0.89575 0.88080 0.93953 0.90745 1.42643 1.09846 1.40883 1.44241 1.19051 0.99521 1.09114 1.10570 0.88993 1.24666 0.97691 0.97912 0.98235 1.69699 1.32578 1.23230 1.31958 0.86599 0.85549 0.77229 0.79402 1.20955 1.21664 1.20241 1.23661 0.97521 0.89304 0.95331 0.92382 0.92362 0.87803 0.83871 0.83856 0.82922 0.91731 0.91365 0.91433 0.93010 0.92510 0.80216 0.92884 0.90320 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -3.91 9.15 -36.18 -0.33 -4.24 16 3 C 0.19 2.60 6.66 -38.71 -0.26 2.35 16 4 C -0.21 -2.43 8.80 -39.44 -0.35 -2.78 16 5 C 0.03 0.30 6.32 -39.42 -0.25 0.05 16 6 Cl -0.06 -0.65 28.94 -51.86 -1.50 -2.16 16 7 C -0.15 -1.81 9.80 -39.60 -0.39 -2.20 16 8 C -0.03 -0.46 7.90 -39.21 -0.31 -0.77 16 9 C -0.16 -2.32 5.53 -104.85 -0.58 -2.90 16 10 C 0.58 9.70 7.39 -12.50 -0.09 9.61 16 11 O -0.53 -10.34 16.30 -12.23 -0.20 -10.54 16 12 N -0.61 -9.51 3.33 -171.76 -0.57 -10.08 16 13 C 0.12 1.69 6.48 -3.06 -0.02 1.67 16 14 C -0.12 -1.66 3.15 -88.78 -0.28 -1.94 16 15 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 16 C -0.14 -1.74 9.17 37.16 0.34 -1.40 16 17 C 0.18 3.15 3.13 -65.78 -0.21 2.94 16 18 H 0.07 1.37 8.04 -51.92 -0.42 0.95 16 19 N -0.73 -15.52 5.08 -51.35 -0.26 -15.78 16 20 C -0.25 -6.53 10.47 -15.06 -0.16 -6.69 16 21 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 22 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 23 N -0.93 -27.65 13.97 55.49 0.78 -26.88 16 24 Si 0.88 20.69 27.73 -169.99 -4.71 15.97 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 28 C 0.07 1.07 4.82 -2.53 -0.01 1.06 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 33 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.15 1.92 5.43 -52.49 -0.28 1.63 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.36 7.59 5.57 -40.82 -0.23 7.36 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 1.28 6.59 -51.93 -0.34 0.94 16 43 H 0.07 1.12 7.22 -51.93 -0.38 0.74 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -31.77 365.52 -8.67 -40.44 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.72 Total: 7.35 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.66 Total: 0.40 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.06 Total: -52.74 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.53 Total: -14.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.97 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.77 -8.67 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.936 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds