Wall clock time and date at job start Tue Mar 31 2020 20:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50930 * 2 1 4 4 C 1.53274 * 109.51329 * 120.09747 * 2 1 3 5 5 N 1.47163 * 108.56851 * 172.90969 * 4 2 1 6 6 C 1.34776 * 121.07895 * 128.80293 * 5 4 2 7 7 O 1.21623 * 119.99840 * 352.74862 * 6 5 4 8 8 C 1.47175 * 120.00464 * 172.75204 * 6 5 4 9 9 C 1.38245 * 128.47605 * 171.06454 * 8 6 5 10 10 N 1.31239 * 111.88645 * 179.84738 * 9 8 6 11 11 N 1.27339 * 120.03728 * 0.48397 * 10 9 8 12 12 S 1.56637 * 109.74107 * 359.72418 * 11 10 9 13 13 C 1.47337 * 117.84827 * 308.77542 * 5 4 2 14 14 C 1.52367 * 108.42656 * 49.17340 * 13 5 4 15 15 C 1.54354 * 110.42461 * 186.37406 * 14 13 5 16 16 C 1.54455 * 102.87648 * 207.62532 * 15 14 13 17 17 N 1.47087 * 107.29971 * 21.48008 * 16 15 14 18 18 C 1.36940 * 125.62739 * 181.00386 * 17 16 15 19 19 H 1.08001 * 119.99539 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.00101 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99606 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47112 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47134 * 120.00374 * 22 20 18 25 25 H 1.48508 * 109.46718 * 239.99935 * 22 20 18 26 26 C 1.47568 * 108.74011 * 1.00823 * 17 16 15 27 27 O 1.41893 * 111.44002 * 309.97127 * 14 13 5 28 28 H 1.08996 * 109.47550 * 299.89963 * 1 2 3 29 29 H 1.09000 * 109.47408 * 59.90178 * 1 2 3 30 30 H 1.09000 * 109.46649 * 179.89739 * 1 2 3 31 31 H 1.09002 * 109.62013 * 53.18746 * 4 2 1 32 32 H 1.09001 * 109.62464 * 292.63476 * 4 2 1 33 33 H 1.07999 * 124.05568 * 359.97438 * 9 8 6 34 34 H 1.09001 * 109.67947 * 168.91709 * 13 5 4 35 35 H 1.08992 * 109.68255 * 289.42701 * 13 5 4 36 36 H 1.08999 * 110.73256 * 325.97304 * 15 14 13 37 37 H 1.08997 * 110.73328 * 89.27609 * 15 14 13 38 38 H 1.09002 * 109.87797 * 262.05829 * 16 15 14 39 39 H 1.08997 * 110.00412 * 140.98399 * 16 15 14 40 40 H 0.97004 * 119.99920 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.37917 * 217.85250 * 26 17 16 42 42 H 1.09005 * 110.47011 * 95.54724 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 1.2499 5 7 3.5033 -0.8631 1.1457 6 6 4.3124 -0.4755 2.1514 7 8 3.8519 0.1171 3.1085 8 6 5.7534 -0.7691 2.0916 9 6 6.7589 -0.3159 2.9251 10 7 7.9333 -0.7858 2.5752 11 7 8.0372 -1.5545 1.5655 12 16 6.6250 -1.7846 0.9281 13 6 4.0533 -1.4399 -0.0936 14 6 3.4217 -0.7227 -1.2803 15 6 3.8440 -1.3960 -2.6035 16 6 3.7659 -0.2359 -3.6202 17 7 3.8531 1.0196 -2.8589 18 6 3.8015 2.2804 -3.3909 19 1 3.8751 3.1426 -2.7446 20 6 3.6547 2.4502 -4.7607 21 7 3.5646 1.3995 -5.5482 22 14 3.5836 4.1701 -5.4862 23 1 3.7044 5.1722 -4.3970 24 1 4.7001 4.3477 -6.4491 25 1 2.2891 4.3576 -6.1894 26 6 4.0055 0.6962 -1.4271 27 8 2.0081 -0.6775 -1.1666 28 1 -0.3634 0.5122 0.8908 29 1 -0.3634 0.5153 -0.8891 30 1 -0.3632 -1.0277 -0.0018 31 1 1.5843 -1.7117 1.3140 32 1 1.7918 -0.1439 2.1379 33 1 6.5970 0.3438 3.7647 34 1 5.1344 -1.3021 -0.1143 35 1 3.8179 -2.5031 -0.1396 36 1 4.8617 -1.7799 -2.5335 37 1 3.1481 -2.1911 -2.8711 38 1 2.8189 -0.2778 -4.1584 39 1 4.5953 -0.3008 -4.3244 40 1 3.4623 1.5182 -6.5055 41 1 3.4435 1.4029 -0.8165 42 1 5.0582 0.7046 -1.1444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071142966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:45 Heat of formation + Delta-G solvation = 48.682658 kcal Electronic energy + Delta-G solvation = -28506.921511 eV Core-core repulsion = 24616.761203 eV Total energy + Delta-G solvation = -3890.160309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.08603 -40.68121 -38.89368 -36.38129 -35.08059 -33.33829 -32.30227 -31.41958 -29.58862 -28.50797 -28.25617 -26.51497 -25.75023 -23.94908 -23.04644 -21.75900 -20.35488 -20.26582 -19.45104 -19.11746 -17.50830 -17.05002 -16.98154 -16.33383 -16.01074 -15.55190 -15.24979 -14.78742 -14.69915 -14.35686 -14.15220 -13.85558 -13.54218 -13.31903 -12.85848 -12.72356 -12.43204 -12.29604 -12.22421 -12.12403 -11.90500 -11.66931 -11.15983 -10.95814 -10.93576 -10.72228 -10.49330 -10.36123 -10.32137 -10.23549 -10.14011 -10.09963 -9.78388 -9.74670 -9.72332 -8.66066 -8.62010 -6.90175 -5.77109 -3.10561 -0.49156 0.55577 1.24988 1.77075 2.43609 2.70667 3.36479 3.42511 3.44578 3.70808 3.76500 4.08881 4.38690 4.47860 4.54443 4.64222 4.85461 4.90274 5.04721 5.14359 5.33720 5.35521 5.37847 5.42346 5.50650 5.56360 5.66506 5.71937 5.96503 5.99786 6.00477 6.20149 6.26088 6.32596 6.38324 6.47017 6.89627 7.44372 7.45296 7.51350 7.56965 7.66261 7.77323 8.18768 9.15554 9.74900 10.39182 11.34672 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.004315 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.330475 B = 6486.975199 C = 7540.938272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.071 0.929 4 C 0.088 3.912 5 N -0.604 5.604 6 C 0.607 3.393 7 O -0.519 6.519 8 C -0.295 4.295 9 C 0.075 3.925 10 N -0.253 5.253 11 N -0.277 5.277 12 S 0.448 5.552 13 C 0.088 3.912 14 C 0.095 3.905 15 C -0.131 4.131 16 C 0.181 3.819 17 N -0.596 5.596 18 C -0.229 4.229 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.118 3.882 27 O -0.342 6.342 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.215 0.785 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.043 0.957 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -9.784 13.843 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.034 4.034 5 N -0.337 5.337 6 C 0.393 3.607 7 O -0.396 6.396 8 C -0.436 4.436 9 C -0.092 4.092 10 N -0.118 5.118 11 N -0.257 5.257 12 S 0.585 5.415 13 C -0.038 4.038 14 C 0.053 3.947 15 C -0.170 4.170 16 C 0.056 3.944 17 N -0.322 5.322 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.009 4.009 27 O -0.260 6.260 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.088 -10.438 13.016 16.685 hybrid contribution -0.537 1.887 0.620 2.057 sum -0.449 -8.551 13.636 16.102 Atomic orbital electron populations 1.21672 0.92057 1.02928 1.03053 1.22506 0.95641 0.96431 0.84369 0.91082 1.22519 0.77715 1.02401 1.00785 1.47998 1.07516 1.62253 1.15969 1.16473 0.82719 0.78825 0.82704 1.90829 1.75055 1.40494 1.33228 1.27969 1.00712 1.10221 1.04667 1.24457 0.84998 0.99144 1.00563 1.70836 1.23868 1.08564 1.08483 1.78671 1.22877 1.15784 1.08353 1.83015 0.96765 1.35696 1.26047 1.22730 0.97500 0.99365 0.84229 1.22277 0.81925 0.97003 0.93469 1.22897 1.00257 1.00285 0.93543 1.21194 1.01568 0.81080 0.90524 1.44391 1.85963 1.02630 0.99196 1.19053 1.43472 0.82422 0.90807 0.90579 1.24769 1.01904 0.97434 0.95965 1.69951 1.56213 1.27016 1.03475 0.86063 0.77329 0.83461 0.79007 1.20548 1.21676 1.21652 1.21933 0.96688 0.93032 0.89214 1.87879 1.19250 1.76548 1.42327 0.91049 0.90874 0.91771 0.90058 0.87774 0.76877 0.90414 0.88937 0.90752 0.90369 0.92910 0.93532 0.93712 0.93900 0.96463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 37.16 0.36 -1.19 16 2 C 0.07 0.94 3.20 -26.59 -0.08 0.86 16 3 H 0.07 1.12 6.26 -51.93 -0.32 0.79 16 4 C 0.09 1.01 5.92 -3.54 -0.02 0.99 16 5 N -0.60 -7.57 2.95 -174.06 -0.51 -8.08 16 6 C 0.61 8.08 7.69 -12.63 -0.10 7.98 16 7 O -0.52 -8.00 16.47 5.26 0.09 -7.91 16 8 C -0.29 -3.52 6.50 -35.95 -0.23 -3.76 16 9 C 0.08 0.86 11.56 -17.80 -0.21 0.66 16 10 N -0.25 -3.31 11.54 30.36 0.35 -2.96 16 11 N -0.28 -3.60 12.51 60.35 0.75 -2.84 16 12 S 0.45 4.79 19.35 -107.50 -2.08 2.71 16 13 C 0.09 1.07 4.52 -3.91 -0.02 1.05 16 14 C 0.10 1.52 0.83 -89.64 -0.07 1.45 16 15 C -0.13 -2.17 6.12 -25.26 -0.15 -2.32 16 16 C 0.18 4.15 5.39 -2.96 -0.02 4.13 16 17 N -0.60 -14.64 3.40 -170.31 -0.58 -15.22 16 18 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 21 N -0.92 -26.29 10.31 55.49 0.57 -25.71 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 C 0.12 2.34 6.18 -2.87 -0.02 2.32 16 27 O -0.34 -5.63 9.92 -35.22 -0.35 -5.98 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16 33 H 0.21 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.08 0.91 3.11 -20.36 -0.06 0.85 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 39 H 0.05 1.17 7.49 -51.93 -0.39 0.78 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.04 0.88 6.09 -51.93 -0.32 0.56 16 42 H 0.02 0.35 7.82 -51.93 -0.41 -0.06 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -32.55 346.83 -7.54 -40.09 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.17 Total: -1.67 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.82 Total: 5.53 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.58 Total: -54.82 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.26 Total: -13.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.08 Total: 2.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.55 -7.54 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.777 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds