Wall clock time and date at job start Tue Mar 31 2020 20:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50798 * 2 1 4 4 C 1.53280 * 109.50864 * 120.09178 * 2 1 3 5 5 N 1.47166 * 108.56945 * 172.90981 * 4 2 1 6 6 C 1.34774 * 121.07846 * 128.76453 * 5 4 2 7 7 O 1.21619 * 120.00088 * 352.77289 * 6 5 4 8 8 C 1.47172 * 120.00198 * 172.76862 * 6 5 4 9 9 C 1.38239 * 128.47710 * 171.05786 * 8 6 5 10 10 N 1.31246 * 111.89017 * 179.85366 * 9 8 6 11 11 N 1.27335 * 120.03609 * 0.49621 * 10 9 8 12 12 S 1.56645 * 109.74087 * 359.71356 * 11 10 9 13 13 C 1.47332 * 117.84572 * 308.78363 * 5 4 2 14 14 C 1.52365 * 108.40450 * 49.18693 * 13 5 4 15 15 C 1.54372 * 110.37872 * 73.36278 * 14 13 5 16 16 C 1.54456 * 102.86894 * 152.42397 * 15 14 13 17 17 N 1.47090 * 107.29706 * 338.49887 * 16 15 14 18 18 C 1.36933 * 125.63017 * 179.04538 * 17 16 15 19 19 H 1.07995 * 120.00132 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00204 * 0.02562 * 18 17 16 21 21 N 1.31625 * 120.00044 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00209 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47370 * 90.00048 * 22 20 18 24 24 H 1.48508 * 109.46905 * 210.00173 * 22 20 18 25 25 H 1.48496 * 109.46988 * 329.99868 * 22 20 18 26 26 C 1.47575 * 108.73825 * 359.02416 * 17 16 15 27 27 O 1.41884 * 111.44474 * 309.91238 * 14 13 5 28 28 H 1.09000 * 109.47342 * 299.90636 * 1 2 3 29 29 H 1.09006 * 109.47139 * 179.90579 * 1 2 3 30 30 H 1.08998 * 109.47094 * 59.91288 * 1 2 3 31 31 H 1.09003 * 109.62267 * 292.63093 * 4 2 1 32 32 H 1.08996 * 109.62248 * 52.99889 * 4 2 1 33 33 H 1.08000 * 124.05526 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.68109 * 168.91039 * 13 5 4 35 35 H 1.09000 * 109.68043 * 289.45949 * 13 5 4 36 36 H 1.08998 * 110.73397 * 270.77348 * 15 14 13 37 37 H 1.09004 * 110.72764 * 33.89777 * 15 14 13 38 38 H 1.08993 * 109.88209 * 97.92694 * 16 15 14 39 39 H 1.09001 * 109.87783 * 219.07602 * 16 15 14 40 40 H 0.97001 * 120.00502 * 179.97438 * 21 20 18 41 41 H 1.09004 * 110.37621 * 264.47331 * 26 17 16 42 42 H 1.09004 * 110.37581 * 142.12386 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7244 1.2501 5 7 3.5033 -0.8631 1.1460 6 6 4.3124 -0.4747 2.1514 7 8 3.8517 0.1181 3.1082 8 6 5.7533 -0.7681 2.0916 9 6 6.7588 -0.3142 2.9247 10 7 7.9334 -0.7839 2.5749 11 7 8.0374 -1.5531 1.5655 12 16 6.6251 -1.7839 0.9285 13 6 4.0533 -1.4398 -0.0932 14 6 3.4218 -0.7220 -1.2796 15 6 4.0033 0.7013 -1.4183 16 6 3.8583 0.9864 -2.9294 17 7 3.7518 -0.3126 -3.6112 18 6 3.5913 -0.4954 -4.9588 19 1 3.5229 -1.4941 -5.3639 20 6 3.5166 0.6031 -5.8042 21 7 3.6005 1.8204 -5.3105 22 14 3.2969 0.3537 -7.6424 23 1 1.8484 0.3178 -7.9675 24 1 3.9409 1.4741 -8.3743 25 1 3.9270 -0.9287 -8.0467 26 6 3.8471 -1.3863 -2.6033 27 8 2.0081 -0.6776 -1.1664 28 1 -0.3634 0.5124 0.8908 29 1 -0.3634 -1.0277 -0.0017 30 1 -0.3633 0.5152 -0.8892 31 1 1.7917 -0.1436 2.1379 32 1 1.5817 -1.7103 1.3160 33 1 6.5968 0.3455 3.7643 34 1 5.1343 -1.3020 -0.1140 35 1 3.8173 -2.5030 -0.1396 36 1 3.4221 1.4143 -0.8335 37 1 5.0509 0.7210 -1.1178 38 1 2.9592 1.5750 -3.1109 39 1 4.7349 1.5239 -3.2909 40 1 3.5486 2.5880 -5.9013 41 1 4.8719 -1.7509 -2.5328 42 1 3.1692 -2.2026 -2.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071142967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:47 Heat of formation + Delta-G solvation = 49.271327 kcal Electronic energy + Delta-G solvation = -28384.887245 eV Core-core repulsion = 24494.752463 eV Total energy + Delta-G solvation = -3890.134782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11548 -40.71055 -38.92311 -36.41270 -35.10882 -33.28537 -32.31489 -31.44597 -29.49706 -28.73564 -28.27998 -26.51193 -25.71250 -23.89926 -23.06889 -21.78218 -20.35163 -20.31678 -19.47437 -19.15303 -17.51226 -17.13634 -17.00414 -16.31178 -16.03466 -15.54123 -15.29943 -14.80134 -14.69042 -14.31482 -14.25517 -13.82678 -13.51802 -13.30037 -12.87493 -12.76944 -12.50932 -12.30601 -12.22512 -12.10399 -12.01122 -11.72039 -11.14129 -10.99566 -10.91825 -10.71970 -10.41514 -10.37774 -10.34464 -10.25204 -10.18559 -10.09717 -9.85778 -9.77318 -9.66246 -8.66258 -8.64236 -6.90365 -5.75408 -3.09357 -0.51712 0.53384 1.22854 1.74165 2.40972 2.66939 3.38481 3.43331 3.45277 3.68454 3.73877 4.06193 4.38058 4.45062 4.55582 4.62131 4.82081 4.88455 4.99565 5.12458 5.30024 5.32148 5.38967 5.40739 5.50458 5.54079 5.64370 5.72457 5.90900 5.93272 5.97053 6.17789 6.27667 6.33224 6.37911 6.47742 6.86622 7.42205 7.47238 7.50101 7.53701 7.63025 7.76910 8.18940 9.16135 9.76191 10.40122 11.36522 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.004053 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.124470 B = 6907.347339 C = 8322.650633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.068 0.932 4 C 0.087 3.913 5 N -0.603 5.603 6 C 0.607 3.393 7 O -0.520 6.520 8 C -0.297 4.297 9 C 0.075 3.925 10 N -0.254 5.254 11 N -0.277 5.277 12 S 0.451 5.549 13 C 0.088 3.912 14 C 0.096 3.904 15 C -0.170 4.170 16 C 0.186 3.814 17 N -0.597 5.597 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.152 3.848 27 O -0.338 6.338 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.215 0.785 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.037 0.963 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -6.667 15.618 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.086 0.914 4 C -0.035 4.035 5 N -0.336 5.336 6 C 0.393 3.607 7 O -0.397 6.397 8 C -0.438 4.438 9 C -0.092 4.092 10 N -0.118 5.118 11 N -0.257 5.257 12 S 0.588 5.412 13 C -0.039 4.039 14 C 0.054 3.946 15 C -0.208 4.208 16 C 0.061 3.939 17 N -0.324 5.324 18 C -0.356 4.356 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.024 3.976 27 O -0.257 6.257 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.400 -7.289 14.803 16.505 hybrid contribution -0.640 0.993 0.142 1.190 sum -0.240 -6.296 14.945 16.219 Atomic orbital electron populations 1.21682 0.92030 1.03114 1.02968 1.22516 0.95702 0.96222 0.84691 0.91366 1.22506 0.77745 1.02512 1.00695 1.47980 1.07483 1.62182 1.15971 1.16468 0.82723 0.78845 0.82683 1.90828 1.75075 1.40601 1.33224 1.27981 1.00708 1.10296 1.04819 1.24460 0.85020 0.99187 1.00531 1.70849 1.23868 1.08582 1.08488 1.78672 1.22981 1.15674 1.08343 1.83119 0.96655 1.35565 1.25839 1.22697 0.97375 0.99558 0.84228 1.22351 0.81677 0.96403 0.94141 1.23424 0.99539 0.95802 1.02047 1.21107 1.01089 0.87964 0.83703 1.44396 1.85935 0.99838 1.02192 1.19034 1.43160 0.92973 0.80404 0.90245 1.24790 1.02002 0.95240 0.98208 1.69952 1.56598 0.96976 1.33409 0.86111 0.77739 0.77012 0.84832 1.21574 1.21716 1.20634 1.21362 0.97608 0.92832 0.85752 1.87958 1.19312 1.76507 1.41891 0.91064 0.91646 0.90895 0.87829 0.89980 0.76900 0.90434 0.88870 0.91545 0.92214 0.93236 0.93741 0.93719 0.94538 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.13 16 2 C 0.07 0.87 3.19 -26.59 -0.08 0.79 16 3 H 0.07 0.96 6.23 -51.93 -0.32 0.64 16 4 C 0.09 0.97 5.92 -3.53 -0.02 0.95 16 5 N -0.60 -7.29 2.95 -174.06 -0.51 -7.80 16 6 C 0.61 7.77 7.68 -12.63 -0.10 7.67 16 7 O -0.52 -7.75 16.47 5.26 0.09 -7.66 16 8 C -0.30 -3.42 6.50 -35.96 -0.23 -3.65 16 9 C 0.07 0.82 11.56 -17.80 -0.21 0.62 16 10 N -0.25 -3.22 11.54 30.36 0.35 -2.87 16 11 N -0.28 -3.53 12.51 60.35 0.75 -2.78 16 12 S 0.45 4.75 19.35 -107.50 -2.08 2.66 16 13 C 0.09 1.06 4.52 -3.91 -0.02 1.04 16 14 C 0.10 1.53 0.84 -89.65 -0.08 1.45 16 15 C -0.17 -3.01 5.87 -25.25 -0.15 -3.15 16 16 C 0.19 4.35 5.38 -2.96 -0.02 4.33 16 17 N -0.60 -14.45 3.40 -170.33 -0.58 -15.03 16 18 C -0.23 -6.10 10.28 -15.06 -0.15 -6.25 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 21 N -0.92 -26.50 10.31 55.49 0.57 -25.93 16 22 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.15 2.82 6.42 -2.88 -0.02 2.80 16 27 O -0.34 -5.56 9.93 -35.22 -0.35 -5.91 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.12 7.06 -51.93 -0.37 0.76 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.21 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.08 0.89 3.12 -20.36 -0.06 0.83 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.14 6.07 -51.93 -0.32 0.82 16 37 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 38 H 0.05 1.31 7.39 -51.93 -0.38 0.93 16 39 H 0.04 1.15 7.50 -51.93 -0.39 0.77 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -32.24 346.78 -7.54 -39.78 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.17 Total: -1.47 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -0.81 Total: 5.20 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.59 Total: -54.41 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.26 Total: -13.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.08 Total: 2.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.24 -7.54 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.049 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds