Wall clock time and date at job start Tue Mar 31 2020 20:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.50696 * 2 1 4 4 C 1.53278 * 109.55872 * 120.12523 * 2 1 3 5 5 N 1.47153 * 108.54981 * 172.85250 * 4 2 1 6 6 C 1.34777 * 121.05947 * 128.89640 * 5 4 2 7 7 O 1.21608 * 120.00289 * 352.91415 * 6 5 4 8 8 C 1.47452 * 120.00106 * 172.90875 * 6 5 4 9 9 C 1.37978 * 124.15527 * 172.49577 * 8 6 5 10 10 S 1.72100 * 104.03059 * 179.90431 * 9 8 6 11 11 N 1.56399 * 96.15813 * 0.32643 * 10 9 8 12 12 N 1.27422 * 109.87389 * 359.79963 * 11 10 9 13 13 C 1.47300 * 117.87694 * 308.87548 * 5 4 2 14 14 C 1.52520 * 108.40099 * 49.37998 * 13 5 4 15 15 C 1.54493 * 110.09576 * 186.98771 * 14 13 5 16 16 C 1.55249 * 101.43558 * 206.77828 * 15 14 13 17 17 N 1.47493 * 104.78265 * 36.67046 * 16 15 14 18 18 C 1.36940 * 125.65985 * 155.91769 * 17 16 15 19 19 H 1.07996 * 119.99627 * 179.69219 * 18 17 16 20 20 C 1.38810 * 120.00204 * 359.68748 * 18 17 16 21 21 N 1.31620 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99786 * 180.27538 * 20 18 17 23 23 H 1.48499 * 109.47263 * 179.72674 * 22 20 18 24 24 H 1.48507 * 109.47314 * 299.72651 * 22 20 18 25 25 H 1.48500 * 109.47200 * 59.72932 * 22 20 18 26 26 C 1.47176 * 108.67136 * 335.65326 * 17 16 15 27 27 O 1.42067 * 111.11739 * 309.58894 * 14 13 5 28 28 H 1.09001 * 109.47132 * 180.10032 * 1 2 3 29 29 H 1.09000 * 109.47282 * 300.10037 * 1 2 3 30 30 H 1.08999 * 109.47338 * 60.10385 * 1 2 3 31 31 H 1.09002 * 109.62368 * 292.58049 * 4 2 1 32 32 H 1.09003 * 109.61925 * 53.13527 * 4 2 1 33 33 H 1.08002 * 127.98338 * 359.97438 * 9 8 6 34 34 H 1.08992 * 109.68066 * 289.65062 * 13 5 4 35 35 H 1.09002 * 109.67598 * 169.10226 * 13 5 4 36 36 H 1.09000 * 111.01511 * 325.02472 * 15 14 13 37 37 H 1.09003 * 111.01101 * 88.89069 * 15 14 13 38 38 H 1.08995 * 110.49528 * 277.80856 * 16 15 14 39 39 H 1.09001 * 110.33029 * 155.44089 * 16 15 14 40 40 H 0.97002 * 119.99598 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.90723 * 121.12093 * 26 17 16 42 42 H 1.09006 * 109.90412 * 242.19399 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0431 -0.7249 1.2493 5 7 3.5042 -0.8639 1.1429 6 6 4.3144 -0.4782 2.1485 7 8 3.8546 0.1100 3.1084 8 6 5.7585 -0.7697 2.0850 9 6 6.6861 -0.2893 2.9864 10 16 8.1806 -0.9395 2.4335 11 7 7.5874 -1.7005 1.2026 12 7 6.3268 -1.5222 1.1495 13 6 4.0529 -1.4383 -0.0976 14 6 3.4234 -0.7141 -1.2831 15 6 3.8366 -1.3998 -2.6044 16 6 3.7373 -0.2195 -3.6080 17 7 4.2005 0.9583 -2.8508 18 6 4.7255 2.1006 -3.3938 19 1 5.0322 2.9125 -2.7510 20 6 4.8636 2.2149 -4.7703 21 7 4.4894 1.2255 -5.5536 22 14 5.5869 3.7700 -5.5104 23 1 5.6325 3.6397 -6.9889 24 1 4.7408 4.9335 -5.1419 25 1 6.9623 3.9731 -4.9888 26 6 3.9990 0.7047 -1.4151 27 8 2.0080 -0.6763 -1.1669 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3634 0.5154 0.8891 30 1 -0.3634 0.5122 -0.8909 31 1 1.7942 -0.1443 2.1376 32 1 1.5852 -1.7120 1.3136 33 1 6.5139 0.3467 3.8421 34 1 3.8139 -2.5005 -0.1473 35 1 5.1344 -1.3035 -0.1174 36 1 4.8557 -1.7819 -2.5444 37 1 3.1381 -2.1941 -2.8676 38 1 2.7061 -0.0802 -3.9323 39 1 4.3849 -0.3969 -4.4666 40 1 4.5856 1.3056 -6.5155 41 1 4.9516 0.7692 -0.8895 42 1 3.2986 1.4321 -1.0045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071196706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:05 Heat of formation + Delta-G solvation = 52.351464 kcal Electronic energy + Delta-G solvation = -28573.931001 eV Core-core repulsion = 24683.929784 eV Total energy + Delta-G solvation = -3890.001217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49447 -40.16803 -38.68067 -36.22566 -34.80856 -33.16955 -32.32805 -31.31972 -29.34412 -28.25581 -27.85750 -26.45632 -25.75402 -23.83878 -23.13446 -21.64647 -20.77656 -20.24622 -19.18644 -18.64539 -17.06073 -16.88233 -16.52337 -16.25164 -15.97908 -15.73193 -15.08565 -14.78309 -14.63765 -14.09350 -13.82990 -13.71515 -13.40217 -13.18059 -12.76819 -12.50877 -12.32420 -12.21738 -12.12559 -11.83334 -11.58251 -11.50240 -11.06419 -10.89483 -10.84498 -10.66456 -10.43788 -10.32377 -10.29278 -10.20896 -10.12547 -9.97785 -9.69982 -9.56373 -9.52480 -8.62737 -8.38783 -6.81352 -5.62930 -3.04745 -0.16485 0.68510 1.22585 1.30418 2.74132 2.95333 3.41035 3.45003 3.46586 3.56918 3.92265 4.38107 4.48820 4.50337 4.77348 4.98218 5.06335 5.11164 5.16269 5.31816 5.49061 5.50498 5.54476 5.64653 5.70150 5.74513 5.87880 6.04366 6.11052 6.19939 6.29501 6.37815 6.46722 6.55114 6.62700 6.69707 7.12329 7.30581 7.58589 7.64237 7.69007 7.87133 7.88199 8.38010 9.23783 9.83909 10.49521 11.40595 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004634 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.109254 B = 6041.213022 C = 7803.350064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.069 0.931 4 C 0.085 3.915 5 N -0.591 5.591 6 C 0.606 3.394 7 O -0.532 6.532 8 C -0.018 4.018 9 C -0.238 4.238 10 S 0.464 5.536 11 N -0.287 5.287 12 N -0.204 5.204 13 C 0.074 3.926 14 C 0.094 3.906 15 C -0.129 4.129 16 C 0.157 3.843 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.074 0.926 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.123 3.877 27 O -0.354 6.354 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.208 0.792 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.108 0.892 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -7.188 17.986 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.037 4.037 5 N -0.322 5.322 6 C 0.390 3.610 7 O -0.409 6.409 8 C -0.165 4.165 9 C -0.395 4.395 10 S 0.600 5.400 11 N -0.267 5.267 12 N -0.074 5.074 13 C -0.050 4.050 14 C 0.054 3.946 15 C -0.168 4.168 16 C 0.032 3.968 17 N -0.325 5.325 18 C -0.352 4.352 19 H 0.092 0.908 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.003 4.003 27 O -0.273 6.273 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.126 0.874 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.894 -7.785 17.189 19.090 hybrid contribution -0.886 1.638 0.384 1.902 sum 2.008 -6.147 17.572 18.725 Atomic orbital electron populations 1.21676 0.92315 1.02881 1.02806 1.22463 0.95375 0.96367 0.84788 0.91345 1.22473 0.78707 1.02128 1.00440 1.48013 1.06872 1.60809 1.16534 1.16685 0.82638 0.78900 0.82784 1.90805 1.75015 1.41551 1.33499 1.22642 0.98078 1.01403 0.94349 1.28854 0.97866 1.06519 1.06296 1.81496 1.12844 1.30198 1.15446 1.78727 1.06808 1.22539 1.18586 1.71603 1.00716 1.14935 1.20186 1.23215 1.02627 0.97638 0.81493 1.22331 0.80780 0.96441 0.95098 1.23031 1.00379 0.99808 0.93564 1.22010 0.98748 0.82085 0.93922 1.44481 1.72995 1.16144 0.98866 1.18994 1.33393 0.92446 0.90338 0.90829 1.24761 1.01582 0.98267 0.95835 1.69780 1.53096 1.30706 1.03277 0.86164 0.78869 0.82373 0.78150 1.21465 1.21263 1.21224 1.21682 0.96658 0.93199 0.88764 1.87871 1.20460 1.76734 1.42221 0.91775 0.91136 0.91128 0.88161 0.90318 0.77474 0.90464 0.84758 0.90399 0.90991 0.96424 0.87411 0.93644 0.96092 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.57 37.16 0.36 -1.30 16 2 C 0.07 1.04 3.17 -26.59 -0.08 0.95 16 3 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 4 C 0.08 1.15 5.93 -3.54 -0.02 1.13 16 5 N -0.59 -8.98 2.94 -173.89 -0.51 -9.49 16 6 C 0.61 9.28 7.68 -12.51 -0.10 9.18 16 7 O -0.53 -8.81 16.29 5.27 0.09 -8.72 16 8 C -0.02 -0.25 6.62 -83.78 -0.55 -0.80 16 9 C -0.24 -2.35 11.22 30.64 0.34 -2.00 16 10 S 0.46 3.87 23.38 -107.50 -2.51 1.36 16 11 N -0.29 -3.68 12.49 60.35 0.75 -2.92 16 12 N -0.20 -2.93 7.99 32.74 0.26 -2.66 16 13 C 0.07 1.18 4.71 -3.85 -0.02 1.16 16 14 C 0.09 1.77 0.80 -89.73 -0.07 1.70 16 15 C -0.13 -2.55 6.22 -24.76 -0.15 -2.70 16 16 C 0.16 3.94 5.91 -2.31 -0.01 3.92 16 17 N -0.60 -15.89 3.40 -170.08 -0.58 -16.47 16 18 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 19 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.12 2.76 6.32 -3.32 -0.02 2.74 16 27 O -0.35 -6.50 9.90 -35.23 -0.35 -6.85 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.29 7.06 -51.93 -0.37 0.93 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.14 2.26 4.11 -67.45 -0.28 1.98 16 36 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 2.98 5.86 -51.93 -0.30 2.68 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.48 7.61 -51.93 -0.40 0.08 16 42 H 0.02 0.56 6.02 -51.93 -0.31 0.24 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -33.74 347.35 -7.99 -41.73 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.32 Total: 0.89 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.59 Total: 7.08 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.49 Total: -58.09 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.26 Total: -15.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.51 Total: 1.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.74 -7.99 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071196706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.082 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds