Wall clock time and date at job start Tue Mar 31 2020 20:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51251 * 2 1 4 4 C 1.53279 * 109.51083 * 120.10171 * 2 1 3 5 5 N 1.47166 * 108.56843 * 172.95755 * 4 2 1 6 6 C 1.34779 * 121.07618 * 128.75101 * 5 4 2 7 7 O 1.21602 * 119.99963 * 352.97229 * 6 5 4 8 8 C 1.47441 * 119.99843 * 172.97274 * 6 5 4 9 9 C 1.37979 * 124.15418 * 172.48369 * 8 6 5 10 10 S 1.72108 * 104.03516 * 179.97438 * 9 8 6 11 11 N 1.56401 * 96.15224 * 0.02562 * 10 9 8 12 12 N 1.27421 * 109.87481 * 359.74380 * 11 10 9 13 13 C 1.47333 * 117.84634 * 308.77338 * 5 4 2 14 14 C 1.52368 * 108.39904 * 49.19084 * 13 5 4 15 15 C 1.54372 * 110.37926 * 73.37507 * 14 13 5 16 16 C 1.54457 * 102.87111 * 152.41176 * 15 14 13 17 17 N 1.47089 * 107.29655 * 338.50268 * 16 15 14 18 18 C 1.36930 * 125.62811 * 179.00263 * 17 16 15 19 19 H 1.08005 * 119.99986 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00461 * 0.02562 * 18 17 16 21 21 N 1.31628 * 119.99418 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00508 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46831 * 60.00030 * 22 20 18 24 24 H 1.48497 * 109.47041 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46759 * 300.00398 * 22 20 18 26 26 C 1.47568 * 108.74227 * 359.01553 * 17 16 15 27 27 O 1.41875 * 111.44646 * 309.90861 * 14 13 5 28 28 H 1.09000 * 109.46818 * 299.90386 * 1 2 3 29 29 H 1.09008 * 109.46806 * 59.89592 * 1 2 3 30 30 H 1.09001 * 109.47564 * 179.89722 * 1 2 3 31 31 H 1.09002 * 109.62303 * 53.23132 * 4 2 1 32 32 H 1.09006 * 109.77504 * 292.77325 * 4 2 1 33 33 H 1.08002 * 127.98434 * 359.97438 * 9 8 6 34 34 H 1.09000 * 109.67835 * 289.46317 * 13 5 4 35 35 H 1.09002 * 109.68017 * 168.91583 * 13 5 4 36 36 H 1.09006 * 110.73399 * 270.75323 * 15 14 13 37 37 H 1.08991 * 110.73749 * 34.06229 * 15 14 13 38 38 H 1.09008 * 109.87745 * 97.92409 * 16 15 14 39 39 H 1.08993 * 109.88048 * 218.92506 * 16 15 14 40 40 H 0.96996 * 119.99857 * 179.97438 * 21 20 18 41 41 H 1.09003 * 110.37788 * 264.48194 * 26 17 16 42 42 H 1.08997 * 110.37700 * 142.12886 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2499 5 7 3.5035 -0.8622 1.1462 6 6 4.3119 -0.4734 2.1521 7 8 3.8500 0.1156 3.1104 8 6 5.7564 -0.7623 2.0905 9 6 6.6823 -0.2786 2.9919 10 16 8.1790 -0.9254 2.4407 11 7 7.5873 -1.6958 1.2149 12 7 6.3257 -1.5242 1.1633 13 6 4.0543 -1.4382 -0.0929 14 6 3.4226 -0.7203 -1.2792 15 6 4.0035 0.7033 -1.4174 16 6 3.8589 0.9886 -2.9285 17 7 3.7533 -0.3102 -3.6107 18 6 3.5926 -0.4927 -4.9582 19 1 3.5249 -1.4915 -5.3636 20 6 3.5168 0.6059 -5.8033 21 7 3.5998 1.8231 -5.3093 22 14 3.2968 0.3570 -7.6415 23 1 2.0310 -0.3775 -7.8936 24 1 3.2448 1.6783 -8.3172 25 1 4.4391 -0.4277 -8.1749 26 6 3.8489 -1.3842 -2.6031 27 8 2.0090 -0.6770 -1.1666 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5155 -0.8891 30 1 -0.3634 -1.0276 -0.0018 31 1 1.5849 -1.7121 1.3135 32 1 1.7908 -0.1472 2.1398 33 1 6.5081 0.3587 3.8463 34 1 3.8190 -2.5015 -0.1396 35 1 5.1353 -1.2997 -0.1132 36 1 3.4216 1.4159 -0.8328 37 1 5.0517 0.7230 -1.1195 38 1 2.9594 1.5769 -3.1102 39 1 4.7341 1.5290 -3.2890 40 1 3.5472 2.5908 -5.8998 41 1 4.8739 -1.7482 -2.5323 42 1 3.1716 -2.2007 -2.8534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071196707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:08 Heat of formation + Delta-G solvation = 52.150015 kcal Electronic energy + Delta-G solvation = -28457.372369 eV Core-core repulsion = 24567.362416 eV Total energy + Delta-G solvation = -3890.009953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54461 -40.19088 -38.71192 -36.23884 -34.81500 -33.08001 -32.37233 -31.31676 -29.28823 -28.45088 -27.94953 -26.47815 -25.63034 -23.84293 -23.12576 -21.68790 -20.81190 -20.15139 -19.25976 -18.73305 -17.02417 -16.98658 -16.57260 -16.26584 -15.89834 -15.75062 -15.12317 -14.68440 -14.61479 -14.12322 -14.04324 -13.54481 -13.39026 -13.23672 -12.79820 -12.48062 -12.38432 -12.19579 -11.99580 -11.94223 -11.76977 -11.55375 -10.98486 -10.89494 -10.82036 -10.65073 -10.39441 -10.35476 -10.27054 -10.21353 -10.08532 -10.03372 -9.80116 -9.61200 -9.50007 -8.53298 -8.40365 -6.77189 -5.64712 -2.97571 -0.22820 0.62391 1.16795 1.24316 2.70761 2.89756 3.45512 3.49200 3.50601 3.51978 3.93609 4.32826 4.44699 4.54475 4.76929 4.93594 5.04742 5.09936 5.15533 5.28506 5.47036 5.52252 5.57036 5.65579 5.69668 5.82459 5.86681 6.01707 6.06896 6.16068 6.22473 6.35741 6.47434 6.51429 6.59724 6.69665 7.08562 7.25488 7.59563 7.66423 7.72973 7.83189 7.88022 8.30795 9.27631 9.87745 10.53632 11.47307 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003878 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.137050 B = 7217.973378 C = 8740.169235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.084 3.916 5 N -0.589 5.589 6 C 0.606 3.394 7 O -0.533 6.533 8 C -0.018 4.018 9 C -0.238 4.238 10 S 0.463 5.537 11 N -0.287 5.287 12 N -0.204 5.204 13 C 0.073 3.927 14 C 0.093 3.907 15 C -0.166 4.166 16 C 0.187 3.813 17 N -0.599 5.599 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.154 3.846 27 O -0.344 6.344 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.208 0.792 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.251 0.749 41 H 0.039 0.961 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -4.530 20.176 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.039 4.039 5 N -0.320 5.320 6 C 0.389 3.611 7 O -0.409 6.409 8 C -0.165 4.165 9 C -0.396 4.396 10 S 0.600 5.400 11 N -0.267 5.267 12 N -0.074 5.074 13 C -0.050 4.050 14 C 0.052 3.948 15 C -0.205 4.205 16 C 0.062 3.938 17 N -0.325 5.325 18 C -0.352 4.352 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.027 3.973 27 O -0.263 6.263 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.225 0.775 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.875 -5.079 19.393 20.890 hybrid contribution -1.285 0.737 -0.230 1.499 sum 4.590 -4.342 19.162 20.177 Atomic orbital electron populations 1.21678 0.92319 1.02987 1.02769 1.22447 0.95450 0.96087 0.84914 0.91643 1.22499 0.78614 1.02270 1.00471 1.48003 1.06907 1.60582 1.16532 1.16675 0.82624 0.79003 0.82795 1.90807 1.74910 1.41633 1.33578 1.22658 0.98115 1.01184 0.94523 1.28868 0.97916 1.06592 1.06177 1.81527 1.12754 1.30090 1.15675 1.78745 1.06798 1.22453 1.18697 1.71635 1.00640 1.14826 1.20347 1.23096 1.02285 0.97901 0.81737 1.22426 0.81115 0.96242 0.95059 1.23365 0.99484 0.96048 1.01598 1.21075 1.00769 0.87892 0.84035 1.44399 1.85892 1.00015 1.02181 1.19012 1.42678 0.92890 0.80607 0.90405 1.24780 1.02325 0.95257 0.98094 1.69960 1.56982 0.96900 1.33320 0.86189 0.77993 0.76559 0.84960 1.21191 1.21693 1.21209 1.21331 0.97605 0.92543 0.85849 1.87920 1.20095 1.76535 1.41732 0.91217 0.91015 0.91741 0.90281 0.88205 0.77469 0.90439 0.84982 0.91963 0.92257 0.93498 0.94025 0.93825 0.94389 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.57 37.16 0.36 -1.36 16 2 C 0.07 1.04 3.19 -26.59 -0.08 0.96 16 3 H 0.07 1.05 6.22 -51.93 -0.32 0.73 16 4 C 0.08 1.11 5.92 -3.53 -0.02 1.09 16 5 N -0.59 -8.58 2.95 -173.95 -0.51 -9.09 16 6 C 0.61 8.78 7.68 -12.51 -0.10 8.68 16 7 O -0.53 -8.45 16.29 5.28 0.09 -8.36 16 8 C -0.02 -0.23 6.61 -83.78 -0.55 -0.78 16 9 C -0.24 -2.13 11.22 30.64 0.34 -1.78 16 10 S 0.46 3.44 23.38 -107.50 -2.51 0.92 16 11 N -0.29 -3.42 12.49 60.35 0.75 -2.66 16 12 N -0.20 -2.74 8.00 32.73 0.26 -2.47 16 13 C 0.07 1.14 4.79 -3.91 -0.02 1.12 16 14 C 0.09 1.73 0.84 -89.64 -0.08 1.65 16 15 C -0.17 -3.32 5.87 -25.25 -0.15 -3.47 16 16 C 0.19 4.72 5.38 -2.96 -0.02 4.71 16 17 N -0.60 -15.73 3.40 -170.32 -0.58 -16.31 16 18 C -0.22 -6.37 10.28 -15.06 -0.15 -6.52 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -27.70 10.31 55.49 0.57 -27.13 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 C 0.15 3.29 6.42 -2.88 -0.02 3.27 16 27 O -0.34 -6.48 9.93 -35.22 -0.35 -6.83 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.25 7.06 -51.93 -0.37 0.89 16 33 H 0.21 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.13 2.09 4.17 -64.41 -0.27 1.82 16 36 H 0.06 1.19 6.07 -51.93 -0.32 0.87 16 37 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 38 H 0.05 1.32 7.39 -51.92 -0.38 0.94 16 39 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.78 7.99 -51.93 -0.42 0.37 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -34.10 348.17 -8.01 -42.11 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.37 Total: -0.14 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.58 Total: 7.22 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.50 Total: -57.66 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.26 Total: -15.19 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.51 Total: 0.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.10 -8.01 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071196707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.261 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds