Wall clock time and date at job start Tue Mar 31 2020 20:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51571 * 2 1 4 4 C 1.53276 * 109.51278 * 239.89712 * 2 1 3 5 5 N 1.47157 * 108.55928 * 187.19378 * 4 2 1 6 6 C 1.34774 * 121.06371 * 231.12728 * 5 4 2 7 7 O 1.21604 * 120.00000 * 357.14842 * 6 5 4 8 8 C 1.47453 * 120.00429 * 177.14646 * 6 5 4 9 9 C 1.37980 * 124.16160 * 187.10543 * 8 6 5 10 10 S 1.72090 * 104.03553 * 179.97438 * 9 8 6 11 11 N 1.56405 * 96.15762 * 359.97438 * 10 9 8 12 12 N 1.27424 * 109.87245 * 359.75020 * 11 10 9 13 13 C 1.47312 * 117.87939 * 51.10087 * 5 4 2 14 14 C 1.52516 * 108.39277 * 310.62392 * 13 5 4 15 15 C 1.54520 * 110.04727 * 287.93118 * 14 13 5 16 16 C 1.55019 * 101.52263 * 206.90858 * 15 14 13 17 17 N 1.47491 * 104.90090 * 36.37726 * 16 15 14 18 18 C 1.36932 * 125.66406 * 155.99873 * 17 16 15 19 19 H 1.08001 * 120.00077 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99962 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00454 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47190 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47119 * 120.00328 * 22 20 18 25 25 H 1.48498 * 109.47596 * 240.00253 * 22 20 18 26 26 C 1.47192 * 108.67201 * 335.97797 * 17 16 15 27 27 O 1.42071 * 111.11224 * 50.43701 * 14 13 5 28 28 H 1.09002 * 109.47047 * 180.10143 * 1 2 3 29 29 H 1.08995 * 109.46969 * 60.10122 * 1 2 3 30 30 H 1.09001 * 109.46950 * 300.09656 * 1 2 3 31 31 H 1.08999 * 109.62574 * 306.91344 * 4 2 1 32 32 H 1.08997 * 109.62274 * 67.47407 * 4 2 1 33 33 H 1.08003 * 127.97788 * 359.95179 * 9 8 6 34 34 H 1.09006 * 109.67516 * 70.34610 * 13 5 4 35 35 H 1.08991 * 109.68333 * 190.89664 * 13 5 4 36 36 H 1.08996 * 111.01326 * 324.97207 * 15 14 13 37 37 H 1.09003 * 111.01329 * 88.85020 * 15 14 13 38 38 H 1.08999 * 110.35583 * 155.23239 * 16 15 14 39 39 H 1.09001 * 110.35800 * 277.52550 * 16 15 14 40 40 H 0.96999 * 120.00736 * 179.97438 * 21 20 18 41 41 H 1.08994 * 109.90686 * 242.14341 * 26 17 16 42 42 H 1.08992 * 109.90638 * 120.87412 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5030 -0.8653 -1.1442 6 6 4.3133 -0.4795 -2.1497 7 8 3.8375 -0.0547 -3.1851 8 6 5.7766 -0.5725 -1.9945 9 6 6.6856 -0.0746 -2.9053 10 16 8.2166 -0.4595 -2.2201 11 7 7.6557 -1.1618 -0.9401 12 7 6.3818 -1.1402 -0.9572 13 6 4.0517 -1.4407 0.0959 14 6 3.4235 -0.7161 1.2817 15 6 3.9928 0.7164 1.3893 16 6 3.8341 0.9997 2.9051 17 7 4.1110 -0.2909 3.5631 18 6 4.5412 -0.4534 4.8529 19 1 4.7165 -1.4452 5.2429 20 6 4.7522 0.6567 5.6592 21 7 4.5382 1.8654 5.1842 22 14 5.3399 0.4351 7.4184 23 1 5.5048 -1.0123 7.7067 24 1 6.6422 1.1263 7.5960 25 1 4.3405 1.0152 8.3511 26 6 3.8474 -1.3754 2.6034 27 8 2.0080 -0.6774 1.1663 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3633 0.5122 -0.8909 30 1 -0.3633 0.5153 0.8891 31 1 1.5830 -1.7111 -1.3149 32 1 1.7935 -0.1431 -2.1377 33 1 6.4830 0.4380 -3.8341 34 1 3.8114 -2.5028 0.1454 35 1 5.1333 -1.3073 0.1152 36 1 5.0417 0.7433 1.0942 37 1 3.4037 1.4166 0.7970 38 1 4.5541 1.7518 3.2276 39 1 2.8181 1.3272 3.1253 40 1 4.6852 2.6411 5.7477 41 1 3.0447 -2.0125 2.9745 42 1 4.7519 -1.9641 2.4511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071196708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:10 Heat of formation + Delta-G solvation = 55.744118 kcal Electronic energy + Delta-G solvation = -28553.462836 eV Core-core repulsion = 24663.608735 eV Total energy + Delta-G solvation = -3889.854101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54191 -40.17252 -38.70856 -36.23914 -34.81757 -33.11390 -32.33919 -31.32857 -29.24403 -28.44274 -27.96118 -26.47074 -25.64164 -23.84650 -23.11177 -21.72561 -20.78761 -20.07277 -19.22807 -18.78879 -17.03158 -17.00652 -16.49895 -16.27944 -15.89939 -15.76895 -15.09565 -14.71596 -14.69799 -14.20762 -14.00154 -13.48771 -13.33508 -13.20634 -12.81338 -12.47922 -12.35311 -12.26838 -12.17724 -11.82307 -11.65080 -11.50444 -11.02421 -10.91916 -10.85504 -10.67525 -10.41757 -10.33255 -10.26838 -10.19476 -10.03422 -9.96543 -9.65128 -9.56524 -9.48271 -8.61396 -8.38998 -6.78977 -5.60835 -3.01997 -0.18353 0.66636 1.20052 1.27740 2.72384 2.93783 3.43041 3.48290 3.51024 3.52993 3.91605 4.35944 4.46310 4.52567 4.75562 4.94874 5.06300 5.10743 5.13690 5.29753 5.45850 5.52657 5.54512 5.61913 5.69123 5.81667 5.90580 6.01919 6.07317 6.20767 6.25828 6.42555 6.53428 6.54526 6.65722 6.74404 7.10170 7.30446 7.57668 7.65223 7.71186 7.85434 7.88868 8.38576 9.25901 9.86462 10.51755 11.43517 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.004430 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.357360 B = 6319.446374 C = 8313.150854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.587 5.587 6 C 0.605 3.395 7 O -0.534 6.534 8 C -0.017 4.017 9 C -0.241 4.241 10 S 0.468 5.532 11 N -0.283 5.283 12 N -0.204 5.204 13 C 0.053 3.947 14 C 0.098 3.902 15 C -0.165 4.165 16 C 0.161 3.839 17 N -0.601 5.601 18 C -0.217 4.217 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.154 3.846 27 O -0.354 6.354 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.208 0.792 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.014 0.986 40 H 0.250 0.750 41 H 0.036 0.964 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -3.810 -19.515 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.039 4.039 5 N -0.318 5.318 6 C 0.389 3.611 7 O -0.411 6.411 8 C -0.163 4.163 9 C -0.398 4.398 10 S 0.604 5.396 11 N -0.263 5.263 12 N -0.073 5.073 13 C -0.070 4.070 14 C 0.057 3.943 15 C -0.204 4.204 16 C 0.036 3.964 17 N -0.327 5.327 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.028 3.972 27 O -0.273 6.273 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.225 0.775 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.394 -4.181 -18.628 19.390 hybrid contribution -1.075 0.425 0.074 1.159 sum 2.318 -3.756 -18.554 19.072 Atomic orbital electron populations 1.21686 0.92332 1.03008 1.02749 1.22457 0.95377 0.96125 0.84946 0.91553 1.22480 0.78849 1.02255 1.00268 1.48007 1.06804 1.60258 1.16732 1.16691 0.82817 0.78112 0.83506 1.90804 1.75102 1.47572 1.27643 1.22670 0.97834 1.03508 0.92320 1.28844 0.98053 1.06028 1.06834 1.81517 1.11293 1.37362 1.09432 1.78765 1.07173 1.20833 1.19548 1.71363 0.99502 1.16615 1.19865 1.23588 1.04361 0.97424 0.81675 1.22277 0.80591 0.96539 0.94884 1.23490 0.99738 0.95193 1.01962 1.21868 0.99916 0.90089 0.84491 1.44494 1.78248 1.00382 1.09574 1.19129 1.36262 0.93119 0.86034 0.90288 1.24771 1.02155 0.95230 0.98593 1.69814 1.55518 0.97014 1.34890 0.85992 0.77942 0.77289 0.84260 1.20480 1.21830 1.21817 1.21052 0.97387 0.91998 0.86767 1.87908 1.20688 1.76635 1.42047 0.91715 0.91153 0.91106 0.90308 0.88249 0.77475 0.90795 0.82936 0.91825 0.92254 0.87750 0.96760 0.93873 0.94574 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 37.16 0.36 -1.27 16 2 C 0.07 1.01 3.17 -26.59 -0.08 0.93 16 3 H 0.07 1.03 6.13 -51.93 -0.32 0.71 16 4 C 0.08 1.11 5.90 -3.54 -0.02 1.09 16 5 N -0.59 -8.71 2.91 -173.89 -0.51 -9.22 16 6 C 0.61 8.95 7.70 -12.51 -0.10 8.86 16 7 O -0.53 -8.54 16.29 5.27 0.09 -8.45 16 8 C -0.02 -0.22 6.70 -83.78 -0.56 -0.78 16 9 C -0.24 -2.25 11.22 30.64 0.34 -1.90 16 10 S 0.47 3.77 23.38 -107.50 -2.51 1.25 16 11 N -0.28 -3.64 12.49 60.35 0.75 -2.89 16 12 N -0.20 -2.91 7.81 32.74 0.26 -2.65 16 13 C 0.05 0.85 4.95 -3.85 -0.02 0.83 16 14 C 0.10 1.84 0.83 -89.73 -0.07 1.77 16 15 C -0.17 -3.36 5.91 -24.87 -0.15 -3.51 16 16 C 0.16 4.09 5.88 -2.43 -0.01 4.08 16 17 N -0.60 -15.87 3.40 -170.23 -0.58 -16.45 16 18 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -27.43 10.09 55.49 0.56 -26.87 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.15 3.38 6.61 -3.32 -0.02 3.36 16 27 O -0.35 -6.52 9.87 -35.23 -0.35 -6.87 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.24 7.09 -51.93 -0.37 0.88 16 33 H 0.21 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.15 2.54 3.59 -127.08 -0.46 2.08 16 36 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 37 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 38 H 0.10 2.95 5.89 -51.93 -0.31 2.65 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 42 H 0.04 0.87 7.79 -51.93 -0.40 0.47 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -33.82 346.78 -8.18 -42.00 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.50 Total: 0.86 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.59 Total: 6.67 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.48 Total: -58.08 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.26 Total: -15.32 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.51 Total: 1.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.82 -8.18 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071196708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.740 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds