Wall clock time and date at job start Tue Mar 31 2020 20:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.51767 * 2 1 4 4 C 1.53276 * 109.51612 * 239.89383 * 2 1 3 5 5 N 1.47170 * 108.56685 * 187.06365 * 4 2 1 6 6 C 1.34770 * 121.08459 * 231.26409 * 5 4 2 7 7 O 1.21605 * 119.99858 * 357.12975 * 6 5 4 8 8 C 1.47447 * 120.00224 * 177.12482 * 6 5 4 9 9 C 1.37983 * 124.15721 * 187.09694 * 8 6 5 10 10 S 1.72099 * 104.03433 * 180.02562 * 9 8 6 11 11 N 1.56398 * 96.15423 * 0.02562 * 10 9 8 12 12 N 1.27417 * 109.87976 * 359.72705 * 11 10 9 13 13 C 1.47335 * 117.83711 * 51.24712 * 5 4 2 14 14 C 1.52368 * 108.41401 * 310.82483 * 13 5 4 15 15 C 1.54353 * 110.41420 * 173.58366 * 14 13 5 16 16 C 1.54471 * 102.95212 * 152.17260 * 15 14 13 17 17 N 1.47083 * 107.29242 * 338.86776 * 16 15 14 18 18 C 1.36940 * 125.62869 * 178.89013 * 17 16 15 19 19 H 1.08008 * 119.99768 * 179.69535 * 18 17 16 20 20 C 1.38808 * 120.00093 * 359.68801 * 18 17 16 21 21 N 1.31615 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47363 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47101 * 300.00173 * 22 20 18 25 25 H 1.48505 * 109.47127 * 59.99802 * 22 20 18 26 26 C 1.47565 * 108.73840 * 358.61803 * 17 16 15 27 27 O 1.41887 * 111.45573 * 50.04284 * 14 13 5 28 28 H 1.08994 * 109.47317 * 180.10070 * 1 2 3 29 29 H 1.08996 * 109.47392 * 300.10648 * 1 2 3 30 30 H 1.09004 * 109.46766 * 60.10393 * 1 2 3 31 31 H 1.09002 * 109.61942 * 67.34701 * 4 2 1 32 32 H 1.08999 * 109.62372 * 306.79230 * 4 2 1 33 33 H 1.08000 * 127.98217 * 0.04160 * 9 8 6 34 34 H 1.08991 * 109.67668 * 191.09150 * 13 5 4 35 35 H 1.09001 * 109.67735 * 70.55263 * 13 5 4 36 36 H 1.08998 * 110.73734 * 270.72359 * 15 14 13 37 37 H 1.08997 * 110.73195 * 33.85391 * 15 14 13 38 38 H 1.09004 * 109.99484 * 219.38056 * 16 15 14 39 39 H 1.09001 * 109.77382 * 98.22892 * 16 15 14 40 40 H 0.96996 * 120.00523 * 180.02562 * 21 20 18 41 41 H 1.09003 * 110.37318 * 142.38465 * 26 17 16 42 42 H 1.08996 * 110.37989 * 264.62409 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2498 5 7 3.5035 -0.8626 -1.1457 6 6 4.3125 -0.4738 -2.1511 7 8 3.8353 -0.0486 -3.1856 8 6 5.7761 -0.5639 -1.9966 9 6 6.6835 -0.0630 -2.9073 10 16 8.2157 -0.4467 -2.2240 11 7 7.6569 -1.1533 -0.9455 12 7 6.3830 -1.1337 -0.9615 13 6 4.0536 -1.4393 0.0935 14 6 3.4216 -0.7222 1.2800 15 6 3.8431 -1.3960 2.6032 16 6 3.7705 -0.2362 3.6208 17 7 3.8525 1.0194 2.8593 18 6 3.8014 2.2801 3.3917 19 1 3.8755 3.1425 2.7456 20 6 3.6544 2.4496 4.7615 21 7 3.5646 1.3987 5.5488 22 14 3.5840 4.1693 5.4876 23 1 3.4240 4.0783 6.9611 24 1 4.8413 4.8928 5.1694 25 1 2.4303 4.9040 4.9093 26 6 4.0056 0.6964 1.4276 27 8 2.0079 -0.6776 1.1665 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3634 0.5155 0.8890 30 1 -0.3633 0.5122 -0.8910 31 1 1.7915 -0.1443 -2.1378 32 1 1.5847 -1.7120 -1.3136 33 1 6.4794 0.4514 -3.8347 34 1 5.1345 -1.3009 0.1144 35 1 3.8183 -2.5026 0.1395 36 1 3.1469 -2.1911 2.8702 37 1 4.8596 -1.7828 2.5325 38 1 4.6044 -0.3009 4.3198 39 1 2.8258 -0.2798 4.1629 40 1 3.4615 1.5172 6.5060 41 1 3.4440 1.4034 0.8169 42 1 5.0587 0.7063 1.1467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071196709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:12 Heat of formation + Delta-G solvation = 54.214434 kcal Electronic energy + Delta-G solvation = -28665.142937 eV Core-core repulsion = 24775.222504 eV Total energy + Delta-G solvation = -3889.920433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53231 -40.12926 -38.67708 -36.19276 -34.77381 -33.12600 -32.34768 -31.28695 -29.35627 -28.28263 -27.87116 -26.44661 -25.71254 -23.83229 -23.12974 -21.64426 -20.80074 -20.08586 -19.22443 -18.72251 -17.03750 -16.86672 -16.48837 -16.27532 -15.96253 -15.71847 -15.05604 -14.72642 -14.61978 -14.07284 -13.92138 -13.60091 -13.42225 -13.35257 -12.74483 -12.41767 -12.34814 -12.15764 -11.99530 -11.86002 -11.68001 -11.48480 -11.00464 -10.83687 -10.81822 -10.63948 -10.37193 -10.32860 -10.23171 -10.16930 -10.11915 -10.05652 -9.64460 -9.57357 -9.50471 -8.53919 -8.35956 -6.76518 -5.65854 -2.98630 -0.18740 0.66128 1.20260 1.26786 2.74442 2.95988 3.42861 3.46859 3.48334 3.53135 3.98573 4.37189 4.46950 4.52485 4.80995 4.96500 5.09781 5.14645 5.20025 5.33681 5.52343 5.54668 5.58976 5.70599 5.75230 5.77006 5.91040 6.09525 6.14154 6.25219 6.29683 6.42769 6.48047 6.52670 6.62640 6.68400 7.11970 7.30562 7.58519 7.69435 7.78240 7.87607 7.89114 8.31224 9.26970 9.86806 10.53439 11.45811 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004375 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.217895 B = 6397.872487 C = 7724.451284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.068 0.932 4 C 0.084 3.916 5 N -0.588 5.588 6 C 0.605 3.395 7 O -0.534 6.534 8 C -0.015 4.015 9 C -0.239 4.239 10 S 0.468 5.532 11 N -0.287 5.287 12 N -0.205 5.205 13 C 0.053 3.947 14 C 0.094 3.906 15 C -0.129 4.129 16 C 0.183 3.817 17 N -0.597 5.597 18 C -0.227 4.227 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.122 3.878 27 O -0.348 6.348 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.209 0.791 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.037 0.963 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -7.058 -18.144 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.038 4.038 5 N -0.319 5.319 6 C 0.388 3.612 7 O -0.410 6.410 8 C -0.162 4.162 9 C -0.396 4.396 10 S 0.604 5.396 11 N -0.266 5.266 12 N -0.074 5.074 13 C -0.071 4.071 14 C 0.052 3.948 15 C -0.167 4.167 16 C 0.059 3.941 17 N -0.323 5.323 18 C -0.355 4.355 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.004 4.004 27 O -0.267 6.267 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.868 -7.435 -17.219 19.652 hybrid contribution -1.293 1.433 -0.374 1.966 sum 4.575 -6.002 -17.593 19.143 Atomic orbital electron populations 1.21669 0.92361 1.02810 1.02831 1.22438 0.95389 0.96238 0.84655 0.91444 1.22505 0.78705 1.02203 1.00431 1.48031 1.06887 1.60191 1.16787 1.16691 0.82803 0.78159 0.83536 1.90806 1.75006 1.47505 1.27711 1.22669 0.97859 1.03371 0.92287 1.28849 0.98008 1.05939 1.06832 1.81498 1.11262 1.37304 1.09525 1.78723 1.07235 1.20991 1.19702 1.71347 0.99437 1.16743 1.19919 1.23552 1.04283 0.97441 0.81775 1.22314 0.81205 0.96814 0.94429 1.22830 1.00253 0.99901 0.93762 1.21158 1.01175 0.81275 0.90541 1.44389 1.85973 1.02508 0.99464 1.18956 1.43306 0.82524 0.90759 0.90861 1.24760 1.02203 0.97285 0.95975 1.69945 1.56310 1.27029 1.03463 0.86227 0.77816 0.83731 0.78129 1.21537 1.21289 1.21239 1.21892 0.96687 0.93193 0.88677 1.87841 1.20191 1.76509 1.42146 0.91858 0.90992 0.91231 0.88257 0.90356 0.77448 0.83127 0.90750 0.90907 0.90750 0.93859 0.93151 0.93728 0.94512 0.96265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.57 37.16 0.36 -1.42 16 2 C 0.07 1.12 3.20 -26.59 -0.08 1.04 16 3 H 0.07 1.19 6.26 -51.93 -0.32 0.87 16 4 C 0.08 1.16 5.90 -3.53 -0.02 1.14 16 5 N -0.59 -8.89 2.96 -173.95 -0.51 -9.41 16 6 C 0.60 9.11 7.70 -12.51 -0.10 9.01 16 7 O -0.53 -8.72 16.29 5.27 0.09 -8.63 16 8 C -0.02 -0.20 6.70 -83.78 -0.56 -0.76 16 9 C -0.24 -2.25 11.22 30.64 0.34 -1.91 16 10 S 0.47 3.70 23.38 -107.50 -2.51 1.18 16 11 N -0.29 -3.56 12.49 60.35 0.75 -2.80 16 12 N -0.20 -2.86 7.82 32.74 0.26 -2.60 16 13 C 0.05 0.84 5.07 -3.91 -0.02 0.82 16 14 C 0.09 1.77 0.83 -89.65 -0.07 1.69 16 15 C -0.13 -2.52 6.12 -25.25 -0.15 -2.67 16 16 C 0.18 4.61 5.39 -2.95 -0.02 4.59 16 17 N -0.60 -15.83 3.40 -170.31 -0.58 -16.41 16 18 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 19 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 21 N -0.92 -27.52 10.31 55.49 0.57 -26.95 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.12 2.70 6.18 -2.88 -0.02 2.68 16 27 O -0.35 -6.63 9.92 -35.22 -0.35 -6.98 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.31 7.09 -51.93 -0.37 0.94 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.15 2.43 3.57 -125.77 -0.45 1.98 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.32 7.99 -51.93 -0.42 0.90 16 38 H 0.04 1.18 7.52 -51.93 -0.39 0.79 16 39 H 0.05 1.41 7.37 -51.93 -0.38 1.03 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.83 6.09 -51.93 -0.32 0.51 16 42 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -34.31 347.83 -8.23 -42.53 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.56 Total: 0.03 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.60 Total: 7.25 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.49 Total: -58.17 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.26 Total: -15.61 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.51 Total: 1.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.31 -8.23 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071196709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.747 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds