Wall clock time and date at job start Tue Mar 31 2020 20:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21281 * 120.00308 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47404 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00230 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99830 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99603 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47111 * 60.00451 * 14 12 10 16 16 H 1.48500 * 109.46923 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47312 * 300.00111 * 14 12 10 18 18 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 19 19 C 1.54371 * 107.28954 * 1.09430 * 18 5 4 20 20 H 1.09000 * 110.69938 * 263.79651 * 19 18 5 21 21 N 1.46495 * 110.75708 * 140.50781 * 19 18 5 22 22 C 1.34779 * 120.00164 * 91.48224 * 21 19 18 23 23 O 1.21569 * 120.00020 * 359.97438 * 22 21 19 24 24 C 1.47711 * 119.99619 * 180.02562 * 22 21 19 25 25 C 1.41505 * 126.51359 * 180.02562 * 24 22 21 26 26 C 1.35368 * 105.50131 * 179.97438 * 25 24 22 27 27 N 1.35032 * 107.22967 * 359.97438 * 26 25 24 28 28 H 0.97000 * 124.88503 * 179.97438 * 27 26 25 29 29 N 1.28476 * 110.22838 * 359.72802 * 27 26 25 30 30 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 33 33 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 34 34 H 1.09001 * 110.36876 * 36.13074 * 4 2 1 35 35 H 1.09005 * 109.47184 * 299.99337 * 8 6 5 36 36 H 1.08998 * 109.47917 * 59.99534 * 8 6 5 37 37 H 0.97000 * 119.99984 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.88343 * 120.47841 * 18 5 4 39 39 H 1.09000 * 109.88049 * 241.48392 * 18 5 4 40 40 H 0.96999 * 120.00014 * 271.47886 * 21 19 18 41 41 H 1.08005 * 127.24857 * 359.97438 * 25 24 22 42 42 H 1.08003 * 126.37892 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3018 -1.4965 2.7966 8 6 5.7718 -1.9919 1.0181 9 16 6.9293 -2.3452 2.3641 10 6 8.3491 -2.8136 1.4317 11 1 8.3099 -2.8152 0.3524 12 6 9.5182 -3.1794 2.0843 13 7 9.5661 -3.1770 3.3997 14 14 11.0236 -3.6754 1.0957 15 1 11.4375 -2.5464 0.2243 16 1 12.1330 -4.0177 2.0216 17 1 10.6974 -4.8555 0.2555 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8073 -1.2026 20 1 1.4468 -1.6625 -1.4217 21 7 2.2286 0.0507 -2.3815 22 6 2.2004 -0.4899 -3.6158 23 8 2.0571 -1.6895 -3.7509 24 6 2.3446 0.3752 -4.8044 25 6 2.3347 -0.0428 -6.1562 26 6 2.4968 1.0863 -6.8852 27 7 2.5963 2.1136 -6.0146 28 1 2.7192 3.0428 -6.2646 29 7 2.4998 1.6841 -4.8076 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5030 -0.8962 33 1 2.1560 -0.1714 2.0837 34 1 1.4509 -1.6689 1.4041 35 1 5.6303 -2.8891 0.4154 36 1 6.1741 -1.1943 0.3935 37 1 10.3833 -3.4323 3.8557 38 1 4.2426 -0.6000 -1.0599 39 1 3.6678 -2.2891 -1.0394 40 1 2.3432 1.0078 -2.2738 41 1 2.2216 -1.0505 -6.5281 42 1 2.5387 1.1528 -7.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:59 Heat of formation + Delta-G solvation = 7.993962 kcal Electronic energy + Delta-G solvation = -26028.143008 eV Core-core repulsion = 22136.218306 eV Total energy + Delta-G solvation = -3891.924703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.05304 -40.42061 -39.16852 -37.44758 -34.36552 -32.89021 -32.39649 -32.23994 -31.16528 -29.42735 -28.78699 -26.13685 -25.38509 -24.79159 -22.71294 -22.05694 -21.01002 -20.21136 -19.33277 -18.99721 -17.70081 -17.38452 -16.94260 -16.43626 -16.12014 -15.50916 -15.20109 -14.77428 -14.70800 -14.52514 -14.11862 -14.03700 -13.77570 -13.67418 -13.62041 -13.25565 -12.90157 -12.64538 -12.41541 -12.23048 -11.82216 -11.62459 -11.46336 -11.40644 -11.02369 -11.00958 -10.95089 -10.73612 -10.45272 -9.90939 -9.79542 -9.65477 -9.53864 -9.27133 -9.02696 -8.49318 -8.20757 -6.46892 -6.18280 -3.88814 1.16412 1.71215 2.35785 2.71757 3.02050 3.08642 3.09888 3.26373 3.29072 3.32281 3.65698 3.99942 4.11092 4.23862 4.35722 4.41120 4.60489 4.76778 4.93769 5.05473 5.11795 5.13519 5.16716 5.19947 5.32292 5.43222 5.51502 5.57943 5.62163 5.69788 5.75407 5.80870 5.90474 5.91198 5.98459 6.17721 6.19814 6.41149 6.47773 7.09658 7.41860 7.62633 7.66374 7.89092 8.38647 8.57160 9.26869 10.89138 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.002672 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.575626 B =10477.305032 C =12566.569702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.114 3.886 5 N -0.625 5.625 6 C 0.551 3.449 7 O -0.514 6.514 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.091 3.909 19 C 0.139 3.861 20 H 0.112 0.888 21 N -0.707 5.707 22 C 0.607 3.393 23 O -0.525 6.525 24 C -0.013 4.013 25 C -0.178 4.178 26 C -0.015 4.015 27 N -0.382 5.382 28 H 0.447 0.553 29 N -0.259 5.259 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.409 0.591 41 H 0.165 0.835 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 12.580 -20.885 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.110 0.890 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.388 6.388 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.034 4.034 19 C 0.033 3.967 20 H 0.130 0.870 21 N -0.359 5.359 22 C 0.391 3.609 23 O -0.399 6.399 24 C -0.175 4.175 25 C -0.206 4.206 26 C -0.159 4.159 27 N -0.096 5.096 28 H 0.292 0.708 29 N -0.096 5.096 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.245 0.755 41 H 0.182 0.818 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.026 12.586 -18.233 29.864 hybrid contribution 1.331 -0.048 -2.901 3.192 sum -18.695 12.537 -21.134 30.876 Atomic orbital electron populations 1.21701 0.93039 1.02698 1.02350 1.22671 0.96868 0.99799 0.93760 0.89049 1.22200 0.83462 0.98249 0.97068 1.48406 1.12259 1.69405 1.06212 1.20014 0.84003 0.76041 0.86015 1.90709 1.82318 1.51589 1.14223 1.23517 0.96234 1.03949 1.06090 1.85359 1.05002 1.87343 1.05655 1.22824 0.97991 1.52695 0.94786 0.90985 1.24984 0.98461 0.94956 0.95145 1.70009 1.28182 1.45087 1.07065 0.86225 0.80806 0.79060 0.79427 1.19967 1.20815 1.19894 1.22403 0.97639 1.02577 0.80780 1.22099 0.96124 0.94380 0.84051 0.87026 1.45746 1.73844 1.11624 1.04660 1.16894 0.76105 0.86418 0.81491 1.90834 1.49123 1.14009 1.85907 1.21943 1.10189 0.90130 0.95192 1.21854 1.07471 1.00195 0.91057 1.22993 1.07308 0.87528 0.98067 1.43372 1.52297 1.10924 1.03012 0.70825 1.73523 1.18577 1.12930 1.04555 0.91758 0.91927 0.92066 0.89843 0.91120 0.89207 0.89364 0.92149 0.90901 0.90416 0.75522 0.81783 0.79647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.29 37.16 0.35 -0.60 16 2 C -0.11 -0.94 3.27 -88.48 -0.29 -1.23 16 3 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 4 C 0.11 1.34 6.38 -2.53 -0.02 1.32 16 5 N -0.62 -9.40 3.33 -170.50 -0.57 -9.96 16 6 C 0.55 11.03 7.87 -10.99 -0.09 10.94 16 7 O -0.51 -12.17 16.12 5.56 0.09 -12.09 16 8 C -0.15 -3.17 5.35 36.00 0.19 -2.98 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 13 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 14 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.09 1.14 6.24 -3.04 -0.02 1.12 16 19 C 0.14 1.37 2.79 -66.07 -0.18 1.18 16 20 H 0.11 1.17 7.45 -51.93 -0.39 0.79 16 21 N -0.71 -6.51 5.10 -52.99 -0.27 -6.78 16 22 C 0.61 6.83 7.82 -12.39 -0.10 6.73 16 23 O -0.53 -7.52 16.57 5.31 0.09 -7.44 16 24 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 25 C -0.18 -1.41 10.81 -39.36 -0.43 -1.83 16 26 C -0.01 -0.07 12.02 -17.17 -0.21 -0.28 16 27 N -0.38 -1.85 6.83 30.47 0.21 -1.64 16 28 H 0.45 0.49 8.96 -190.44 -1.71 -1.22 16 29 N -0.26 -2.10 11.92 33.42 0.40 -1.71 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 36 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 37 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.41 3.13 8.29 -40.82 -0.34 2.79 16 41 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.19 0.14 8.06 -52.48 -0.42 -0.29 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -38.62 376.35 -9.09 -47.70 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.02 Total: -1.22 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.18 Total: 0.41 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.50 Total: -45.93 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.18 Total: -19.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.62 -9.09 -47.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.698 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds