Wall clock time and date at job start Tue Mar 31 2020 20:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21281 * 120.00308 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47404 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00230 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99830 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99603 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47111 * 60.00451 * 14 12 10 16 16 H 1.48500 * 109.46923 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47312 * 300.00111 * 14 12 10 18 18 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 19 19 C 1.54371 * 107.28954 * 1.09430 * 18 5 4 20 20 H 1.09000 * 110.69938 * 263.79651 * 19 18 5 21 21 N 1.46495 * 110.75708 * 140.50781 * 19 18 5 22 22 C 1.34779 * 120.00164 * 91.48224 * 21 19 18 23 23 O 1.21569 * 120.00020 * 359.97438 * 22 21 19 24 24 C 1.47711 * 119.99619 * 180.02562 * 22 21 19 25 25 C 1.41505 * 126.51359 * 180.02562 * 24 22 21 26 26 C 1.35368 * 105.50131 * 179.97438 * 25 24 22 27 27 N 1.35032 * 107.22967 * 359.97438 * 26 25 24 28 28 H 0.97000 * 124.88503 * 179.97438 * 27 26 25 29 29 N 1.28476 * 110.22838 * 359.72802 * 27 26 25 30 30 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 33 33 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 34 34 H 1.09001 * 110.36876 * 36.13074 * 4 2 1 35 35 H 1.09005 * 109.47184 * 299.99337 * 8 6 5 36 36 H 1.08998 * 109.47917 * 59.99534 * 8 6 5 37 37 H 0.97000 * 119.99984 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.88343 * 120.47841 * 18 5 4 39 39 H 1.09000 * 109.88049 * 241.48392 * 18 5 4 40 40 H 0.96999 * 120.00014 * 271.47886 * 21 19 18 41 41 H 1.08005 * 127.24857 * 359.97438 * 25 24 22 42 42 H 1.08003 * 126.37892 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3018 -1.4965 2.7966 8 6 5.7718 -1.9919 1.0181 9 16 6.9293 -2.3452 2.3641 10 6 8.3491 -2.8136 1.4317 11 1 8.3099 -2.8152 0.3524 12 6 9.5182 -3.1794 2.0843 13 7 9.5661 -3.1770 3.3997 14 14 11.0236 -3.6754 1.0957 15 1 11.4375 -2.5464 0.2243 16 1 12.1330 -4.0177 2.0216 17 1 10.6974 -4.8555 0.2555 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8073 -1.2026 20 1 1.4468 -1.6625 -1.4217 21 7 2.2286 0.0507 -2.3815 22 6 2.2004 -0.4899 -3.6158 23 8 2.0571 -1.6895 -3.7509 24 6 2.3446 0.3752 -4.8044 25 6 2.3347 -0.0428 -6.1562 26 6 2.4968 1.0863 -6.8852 27 7 2.5963 2.1136 -6.0146 28 1 2.7192 3.0428 -6.2646 29 7 2.4998 1.6841 -4.8076 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5030 -0.8962 33 1 2.1560 -0.1714 2.0837 34 1 1.4509 -1.6689 1.4041 35 1 5.6303 -2.8891 0.4154 36 1 6.1741 -1.1943 0.3935 37 1 10.3833 -3.4323 3.8557 38 1 4.2426 -0.6000 -1.0599 39 1 3.6678 -2.2891 -1.0394 40 1 2.3432 1.0078 -2.2738 41 1 2.2216 -1.0505 -6.5281 42 1 2.5387 1.1528 -7.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071655639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:58 Heat of formation + Delta-G solvation = -21.558487 kcal Electronic energy + Delta-G solvation = -26029.424499 eV Core-core repulsion = 22136.218306 eV Total energy + Delta-G solvation = -3893.206193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55870 -41.48849 -40.32739 -38.68946 -35.39587 -34.61090 -33.86668 -32.81254 -31.67238 -30.97865 -29.75612 -27.77840 -26.96675 -25.63905 -23.58024 -22.57604 -21.85549 -21.03884 -20.72087 -19.62228 -19.44784 -18.24627 -18.07372 -17.67490 -16.90892 -16.80212 -16.68257 -16.61718 -15.90846 -15.50002 -15.44266 -14.87135 -14.76966 -14.59185 -14.53090 -14.36892 -14.06949 -13.94618 -13.59203 -13.40007 -13.18950 -13.06904 -12.88696 -12.66228 -12.41708 -12.19936 -12.00394 -11.78636 -11.73548 -11.34664 -11.15197 -11.07451 -10.51863 -10.33843 -10.19967 -10.13062 -9.79109 -8.70951 -8.36692 -6.15904 0.49912 1.19203 1.24520 1.41096 1.42508 1.48575 1.52693 1.76974 2.04826 2.25055 2.31042 2.32326 2.97059 3.12316 3.31630 3.42679 3.45571 3.77565 3.83951 4.02333 4.07837 4.17662 4.21998 4.26015 4.38449 4.44420 4.58946 4.67411 4.70403 4.78967 4.81032 4.84457 4.97542 5.10284 5.19950 5.31624 5.36648 5.38804 5.42262 6.14323 6.17197 6.25606 6.40072 6.87488 7.02803 7.04054 7.10223 8.72459 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.002672 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.575626 B =10477.305032 C =12566.569702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.104 0.896 4 C 0.106 3.894 5 N -0.614 5.614 6 C 0.550 3.450 7 O -0.560 6.560 8 C -0.123 4.123 9 S -0.143 6.143 10 C -0.550 4.550 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.263 1.263 18 C 0.086 3.914 19 C 0.148 3.852 20 H 0.108 0.892 21 N -0.694 5.694 22 C 0.605 3.395 23 O -0.565 6.565 24 C -0.043 4.043 25 C -0.210 4.210 26 C 0.013 3.987 27 N -0.366 5.366 28 H 0.464 0.536 29 N -0.270 5.270 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.161 0.839 42 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 14.124 -24.110 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.123 0.877 4 C -0.017 4.017 5 N -0.349 5.349 6 C 0.338 3.662 7 O -0.438 6.438 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.697 4.697 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.188 1.188 18 C -0.039 4.039 19 C 0.042 3.958 20 H 0.126 0.874 21 N -0.346 5.346 22 C 0.391 3.609 23 O -0.441 6.441 24 C -0.202 4.202 25 C -0.238 4.238 26 C -0.132 4.132 27 N -0.083 5.083 28 H 0.313 0.687 29 N -0.109 5.109 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.256 0.744 41 H 0.179 0.821 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.619 14.193 -21.493 32.993 hybrid contribution 1.386 -0.441 -2.017 2.487 sum -19.233 13.752 -23.510 33.343 Atomic orbital electron populations 1.21692 0.91108 1.03132 1.03405 1.22607 0.98173 0.99479 0.90941 0.87736 1.22501 0.81698 0.99047 0.98413 1.48281 1.12308 1.67217 1.07056 1.19676 0.84476 0.76337 0.85716 1.90688 1.83087 1.54006 1.15988 1.23322 0.95656 1.04955 1.03483 1.85488 1.07647 1.87873 1.10571 1.23147 0.98403 1.53060 0.95121 0.90218 1.26131 1.02057 0.94481 0.96325 1.70169 1.29321 1.45983 1.09127 0.85000 0.76032 0.79141 0.77802 1.18625 1.20064 1.18751 1.22597 0.99680 1.02567 0.79014 1.21953 0.94298 0.94793 0.84725 0.87361 1.45625 1.73093 1.11930 1.03948 1.17193 0.75259 0.86169 0.82317 1.90804 1.51100 1.15683 1.86530 1.21829 1.12411 0.90782 0.95225 1.22072 1.09373 1.01418 0.90941 1.23557 1.04025 0.86000 0.99621 1.43517 1.50495 1.12051 1.02243 0.68702 1.73450 1.19059 1.12150 1.06193 0.90616 0.91888 0.91058 0.90475 0.90248 0.88088 0.87881 0.91857 0.90542 0.91052 0.74384 0.82125 0.75317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.29 71.98 0.67 -0.82 16 2 C -0.09 -1.39 3.27 -9.40 -0.03 -1.42 16 3 H 0.10 1.36 8.01 -2.39 -0.02 1.34 16 4 C 0.11 2.39 6.38 86.85 0.55 2.95 16 5 N -0.61 -18.24 3.33 -811.73 -2.70 -20.94 16 6 C 0.55 22.40 7.87 87.66 0.69 23.09 16 7 O -0.56 -27.39 16.12 -3.03 -0.05 -27.44 16 8 C -0.12 -5.37 5.35 71.23 0.38 -4.99 16 9 S -0.14 -8.27 20.57 -56.49 -1.16 -9.43 16 10 C -0.55 -32.49 9.50 67.95 0.65 -31.85 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 12 C 0.02 0.88 5.49 84.86 0.47 1.34 16 13 N -0.91 -56.86 13.22 21.65 0.29 -56.57 16 14 Si 1.00 44.61 29.55 68.60 2.03 46.64 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 18 C 0.09 2.08 6.24 86.75 0.54 2.62 16 19 C 0.15 2.74 2.79 46.20 0.13 2.87 16 20 H 0.11 2.18 7.45 -2.39 -0.02 2.16 16 21 N -0.69 -11.95 5.10 -439.83 -2.24 -14.20 16 22 C 0.60 13.38 7.82 86.75 0.68 14.05 16 23 O -0.56 -16.38 16.57 -3.93 -0.07 -16.45 16 24 C -0.04 -0.80 7.13 42.46 0.30 -0.49 16 25 C -0.21 -3.06 10.81 22.41 0.24 -2.81 16 26 C 0.01 0.08 12.02 83.54 1.00 1.08 16 27 N -0.37 -2.46 6.83 -57.51 -0.39 -2.85 16 28 H 0.46 -0.58 8.96 -219.99 -1.97 -2.55 16 29 N -0.27 -3.87 11.92 -48.18 -0.57 -4.45 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 1.90 8.04 -2.39 -0.02 1.88 16 34 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16 35 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 36 H 0.10 4.15 8.14 -2.40 -0.02 4.13 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 38 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.42 5.67 8.29 -92.71 -0.77 4.90 16 41 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.23 -0.77 8.06 -2.91 -0.02 -0.80 16 Total: -1.00 -87.56 376.35 -0.27 -87.83 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -1.67 Total: 12.24 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.27 Total: 5.63 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -5.62 Total: -99.01 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.11 Total: -43.89 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -87.56 -0.27 -87.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.274 kcal (2) G-P(sol) polarization free energy of solvation -87.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds