Wall clock time and date at job start Tue Mar 31 2020 20:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.91930 * 2 1 4 4 C 1.55122 * 111.16509 * 236.07565 * 2 1 3 5 5 N 1.47431 * 104.94565 * 205.13495 * 4 2 1 6 6 C 1.34774 * 125.64735 * 204.04149 * 5 4 2 7 7 O 1.21602 * 120.00345 * 359.97239 * 6 5 4 8 8 C 1.47410 * 119.99694 * 179.97438 * 6 5 4 9 9 N 1.31621 * 125.86398 * 359.68118 * 8 6 5 10 10 C 1.33100 * 109.09285 * 179.89593 * 9 8 6 11 11 C 1.35565 * 108.34875 * 0.37436 * 10 9 8 12 12 N 1.35399 * 107.16379 * 359.77969 * 11 10 9 13 13 H 0.96999 * 126.44202 * 180.02562 * 12 11 10 14 14 C 1.47022 * 108.70259 * 23.99987 * 5 4 2 15 15 C 1.54331 * 107.26969 * 358.94339 * 14 5 4 16 16 H 1.09000 * 110.72145 * 96.35237 * 15 14 5 17 17 N 1.46504 * 110.71829 * 219.44578 * 15 14 5 18 18 C 1.34775 * 119.99561 * 271.15516 * 17 15 14 19 19 O 1.21282 * 120.00577 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99768 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00182 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31630 * 119.99849 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46755 * 90.00066 * 26 24 22 28 28 H 1.48495 * 109.46931 * 210.00080 * 26 24 22 29 29 H 1.48500 * 109.46738 * 330.00322 * 26 24 22 30 30 H 1.09000 * 109.47351 * 296.09713 * 1 2 3 31 31 H 1.08998 * 109.46819 * 56.09737 * 1 2 3 32 32 H 1.08998 * 109.47249 * 176.09078 * 1 2 3 33 33 H 1.08994 * 110.42363 * 86.20221 * 4 2 1 34 34 H 1.09007 * 110.29983 * 323.99992 * 4 2 1 35 35 H 1.08000 * 125.82510 * 180.12405 * 10 9 8 36 36 H 1.07998 * 126.41611 * 179.78985 * 11 10 9 37 37 H 1.09002 * 109.88474 * 239.53164 * 14 5 4 38 38 H 1.08994 * 109.88303 * 118.35839 * 14 5 4 39 39 H 0.96993 * 120.00065 * 91.15774 * 17 15 14 40 40 H 1.09005 * 109.46867 * 60.00428 * 20 18 17 41 41 H 1.09000 * 109.47235 * 300.00468 * 20 18 17 42 42 H 0.97005 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8073 -1.2003 5 7 3.4299 -1.2474 -0.7705 6 6 4.4516 -1.5676 -1.5891 7 8 4.3072 -1.5051 -2.7949 8 6 5.7441 -1.9936 -1.0226 9 7 6.0283 -2.0961 0.2584 10 6 7.2862 -2.5098 0.3936 11 6 7.8190 -2.6669 -0.8431 12 7 6.8550 -2.3439 -1.7374 13 1 6.9373 -2.3589 -2.7038 14 6 3.4672 -1.2782 0.6989 15 6 2.0861 -0.8080 1.2022 16 1 1.4450 -1.6615 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2497 -0.4970 3.6133 19 8 2.1512 -1.6985 3.7455 20 6 2.3969 0.3850 4.8264 21 16 2.3912 -0.6374 6.3200 22 6 2.5711 0.6135 7.5478 23 1 2.6457 1.6505 7.2553 24 6 2.6160 0.2663 8.8909 25 7 2.5246 -0.9976 9.2474 26 14 2.8075 1.5923 10.1926 27 1 1.4658 2.0676 10.6160 28 1 3.5279 1.0345 11.3652 29 1 3.5808 2.7289 9.6311 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0252 -0.0701 33 1 2.1643 -0.1732 -2.0837 34 1 1.4553 -1.6695 -1.4054 35 1 7.7966 -2.6861 1.3289 36 1 8.8239 -2.9894 -1.0720 37 1 4.2434 -0.6057 1.0642 38 1 3.6612 -2.2938 1.0436 39 1 2.3077 1.0104 2.2757 40 1 1.5669 1.0905 4.8655 41 1 3.3371 0.9331 4.7652 42 1 2.5563 -1.2403 10.1860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072025711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:05 Heat of formation + Delta-G solvation = -32.326034 kcal Electronic energy + Delta-G solvation = -26299.809173 eV Core-core repulsion = 22406.136064 eV Total energy + Delta-G solvation = -3893.673109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26356 -41.39651 -40.31535 -38.72109 -35.39970 -34.55158 -34.06082 -33.43029 -31.31382 -30.89347 -29.11096 -27.66254 -27.60513 -24.89517 -23.46258 -22.53245 -21.83009 -21.52201 -21.06856 -19.76177 -19.21477 -18.05439 -17.88992 -17.47591 -16.89841 -16.84505 -16.75010 -16.27963 -15.99562 -15.55798 -15.16172 -14.98462 -14.72508 -14.71880 -14.59993 -14.45119 -14.21616 -13.91936 -13.56602 -13.44813 -13.13180 -13.03162 -12.86993 -12.59810 -12.36573 -12.17909 -11.78396 -11.67789 -11.57426 -11.35877 -11.26663 -11.11297 -10.92440 -10.22799 -10.16285 -9.96885 -9.56600 -8.62040 -8.31569 -6.08680 0.23798 1.26142 1.35462 1.44464 1.50211 1.55528 1.60150 1.64100 2.15780 2.26777 2.30438 2.44535 3.02599 3.04294 3.33983 3.38388 3.49452 3.83944 3.93887 4.00710 4.14631 4.25522 4.32024 4.36062 4.44412 4.48649 4.56349 4.58479 4.77547 4.80551 4.84819 4.88232 5.00722 5.09685 5.15253 5.39163 5.45216 5.48811 5.58480 6.11993 6.14372 6.23033 6.51291 6.61574 6.92912 7.09979 7.26898 8.77516 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002590 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.914825 B =10808.371709 C =12382.056337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.111 0.889 4 C 0.110 3.890 5 N -0.593 5.593 6 C 0.618 3.382 7 O -0.569 6.569 8 C 0.105 3.895 9 N -0.461 5.461 10 C -0.060 4.060 11 C 0.014 3.986 12 N -0.517 5.517 13 H 0.440 0.560 14 C 0.113 3.887 15 C 0.138 3.862 16 H 0.091 0.909 17 N -0.700 5.700 18 C 0.539 3.461 19 O -0.559 6.559 20 C -0.129 4.129 21 S -0.150 6.150 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.268 1.268 28 H -0.279 1.279 29 H -0.258 1.258 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.192 0.808 36 H 0.236 0.764 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 3.590 -25.724 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.129 0.871 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.406 3.594 7 O -0.449 6.449 8 C -0.154 4.154 9 N -0.185 5.185 10 C -0.213 4.213 11 C -0.126 4.126 12 N -0.120 5.120 13 H 0.281 0.719 14 C -0.012 4.012 15 C 0.032 3.968 16 H 0.109 0.891 17 N -0.354 5.354 18 C 0.325 3.675 19 O -0.436 6.436 20 C -0.281 4.281 21 S 0.078 5.922 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.819 3.181 27 H -0.193 1.193 28 H -0.204 1.204 29 H -0.182 1.182 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.209 0.791 36 H 0.252 0.748 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.257 0.743 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.831 1.695 -25.446 25.956 hybrid contribution 1.055 1.687 -0.028 1.990 sum 5.886 3.381 -25.474 26.363 Atomic orbital electron populations 1.21705 0.91452 1.03040 1.03425 1.22671 0.97943 0.99751 0.90829 0.87130 1.22615 0.80825 0.99334 0.98335 1.47981 1.12380 1.64639 1.07465 1.16183 0.81346 0.77227 0.84628 1.90804 1.83295 1.56740 1.14065 1.22353 0.91690 1.13571 0.87800 1.70342 1.17374 1.15352 1.15397 1.23085 0.91233 1.07186 0.99753 1.23745 0.96845 1.03309 0.88708 1.42993 1.09716 1.47728 1.11584 0.71856 1.22382 0.98248 1.02279 0.78266 1.22038 0.94903 0.94772 0.85082 0.89074 1.45588 1.74934 1.11294 1.03591 1.20062 0.74814 0.88041 0.84595 1.90710 1.49553 1.16853 1.86503 1.23369 1.06759 1.02285 0.95645 1.85591 1.96091 1.13919 0.96640 1.23207 1.57935 0.94706 0.93421 0.89909 1.26111 0.93961 0.98633 1.00471 1.70186 1.48016 1.18448 1.18146 0.84970 0.78741 0.77658 0.76715 1.19333 1.20437 1.18200 0.91776 0.89874 0.92199 0.88656 0.89813 0.79053 0.74778 0.90504 0.92189 0.74348 0.86923 0.87317 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.32 71.98 0.67 -0.94 16 2 C -0.09 -1.29 3.27 -9.33 -0.03 -1.32 16 3 H 0.11 1.20 8.00 -2.39 -0.02 1.18 16 4 C 0.11 1.83 6.39 86.93 0.56 2.38 16 5 N -0.59 -13.52 3.33 -815.24 -2.71 -16.23 16 6 C 0.62 15.84 7.85 86.66 0.68 16.52 16 7 O -0.57 -16.09 17.35 -4.04 -0.07 -16.16 16 8 C 0.10 2.51 7.81 136.28 1.06 3.57 16 9 N -0.46 -12.03 8.67 -189.52 -1.64 -13.67 16 10 C -0.06 -1.15 11.85 83.88 0.99 -0.16 16 11 C 0.01 0.17 12.00 83.52 1.00 1.17 16 12 N -0.52 -8.17 6.14 -188.02 -1.16 -9.33 16 13 H 0.44 4.76 8.96 -92.71 -0.83 3.92 16 14 C 0.11 2.82 5.28 86.73 0.46 3.27 16 15 C 0.14 3.03 2.74 46.18 0.13 3.16 16 16 H 0.09 2.37 7.52 -2.39 -0.02 2.36 16 17 N -0.70 -16.47 5.12 -436.90 -2.24 -18.70 16 18 C 0.54 19.03 7.85 87.66 0.69 19.72 16 19 O -0.56 -25.16 15.55 -3.04 -0.05 -25.20 16 20 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 21 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 22 C -0.54 -30.81 9.50 67.96 0.65 -30.16 16 23 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 24 C 0.01 0.73 5.49 84.86 0.47 1.20 16 25 N -0.91 -55.84 13.22 21.65 0.29 -55.55 16 26 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.10 1.45 8.04 -2.39 -0.02 1.43 16 34 H 0.08 1.31 7.99 -2.38 -0.02 1.29 16 35 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.24 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.08 2.07 7.51 -2.39 -0.02 2.05 16 38 H 0.06 1.84 7.75 -2.39 -0.02 1.83 16 39 H 0.42 6.88 8.54 -92.71 -0.79 6.08 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 42 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -84.77 373.51 0.50 -84.28 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.55 Total: 20.67 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 7.76 Total: 13.90 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -7.46 Total: -113.48 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.12 Total: -41.36 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -84.77 0.50 -84.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072025711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.952 kcal (2) G-P(sol) polarization free energy of solvation -84.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds