Wall clock time and date at job start Tue Mar 31 2020 20:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.78337 * 2 1 4 4 C 1.54430 * 110.76140 * 123.27576 * 2 1 3 5 5 N 1.47015 * 107.28068 * 140.54432 * 4 2 1 6 6 C 1.34779 * 125.64768 * 181.02377 * 5 4 2 7 7 O 1.21601 * 120.00204 * 0.02562 * 6 5 4 8 8 C 1.47417 * 120.00025 * 180.02562 * 6 5 4 9 9 N 1.31611 * 125.86241 * 0.02772 * 8 6 5 10 10 C 1.33099 * 109.09783 * 179.97438 * 9 8 6 11 11 C 1.35574 * 108.34722 * 359.97438 * 10 9 8 12 12 N 1.35397 * 107.15748 * 359.77442 * 11 10 9 13 13 H 0.97000 * 126.44026 * 180.24392 * 12 11 10 14 14 C 1.47422 * 108.70504 * 1.05829 * 5 4 2 15 15 C 1.54909 * 104.83176 * 335.87169 * 14 5 4 16 16 H 1.09005 * 110.99906 * 155.12136 * 15 14 5 17 17 N 1.46499 * 111.00483 * 278.93444 * 15 14 5 18 18 C 1.34778 * 120.00278 * 270.41483 * 17 15 14 19 19 O 1.21278 * 119.99748 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00209 * 180.02562 * 18 17 15 21 21 S 1.80999 * 109.47181 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99825 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00405 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99855 * 179.72221 * 22 21 20 25 25 N 1.31630 * 119.99849 * 180.27695 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 0.28024 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99557 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00077 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99899 * 26 24 22 30 30 H 1.09002 * 109.47110 * 183.23873 * 1 2 3 31 31 H 1.09002 * 109.47232 * 303.23606 * 1 2 3 32 32 H 1.09003 * 109.47489 * 63.23704 * 1 2 3 33 33 H 1.08995 * 109.87804 * 21.11901 * 4 2 1 34 34 H 1.09003 * 109.87399 * 259.96048 * 4 2 1 35 35 H 1.08001 * 125.83222 * 179.97438 * 10 9 8 36 36 H 1.07999 * 126.41879 * 180.02562 * 11 10 9 37 37 H 1.09006 * 110.36721 * 217.03663 * 14 5 4 38 38 H 1.08998 * 110.36916 * 94.71600 * 14 5 4 39 39 H 0.97000 * 119.99972 * 90.41838 * 17 15 14 40 40 H 1.08999 * 109.47278 * 59.99800 * 20 18 17 41 41 H 1.09002 * 109.46837 * 300.00183 * 20 18 17 42 42 H 0.97005 * 119.99878 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0774 -0.7923 1.2073 5 7 3.2457 -1.5514 0.7380 6 6 3.9941 -2.3844 1.4879 7 8 3.7209 -2.5584 2.6600 8 6 5.1438 -3.0848 0.8872 9 7 5.5418 -2.9820 -0.3630 10 6 6.6092 -3.7559 -0.5452 11 6 6.8973 -4.3690 0.6292 12 7 5.9833 -3.9473 1.5346 13 1 5.9325 -4.2097 2.4671 14 6 3.4636 -1.2497 -0.6885 15 6 2.0789 -0.7954 -1.2138 16 1 2.1844 -0.1519 -2.0873 17 7 1.2271 -1.9488 -1.5145 18 6 1.2505 -2.5017 -2.7434 19 8 1.9770 -2.0447 -3.6002 20 6 0.3738 -3.6877 -3.0529 21 16 0.6307 -4.1959 -4.7710 22 6 -0.4830 -5.5586 -4.8567 23 1 -1.0637 -5.8369 -3.9897 24 6 -0.6187 -6.2705 -6.0405 25 7 -1.4548 -7.2851 -6.1061 26 14 0.3851 -5.7889 -7.5404 27 1 1.6725 -6.5291 -7.5330 28 1 -0.3726 -6.1259 -8.7722 29 1 0.6536 -4.3287 -7.5083 30 1 -0.3633 -1.0260 0.0581 31 1 -0.3634 0.5633 0.8596 32 1 -0.3634 0.4628 -0.9176 33 1 1.3147 -1.4772 1.5777 34 1 2.3758 -0.1037 1.9978 35 1 7.1532 -3.8752 -1.4706 36 1 7.7069 -5.0607 0.8096 37 1 3.7961 -2.1423 -1.2185 38 1 4.1933 -0.4477 -0.7995 39 1 0.6462 -2.3145 -0.8291 40 1 -0.6713 -3.4151 -2.9066 41 1 0.6305 -4.5125 -2.3881 42 1 -1.5494 -7.7829 -6.9334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072025713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:10 Heat of formation + Delta-G solvation = -0.448427 kcal Electronic energy + Delta-G solvation = -26836.870558 eV Core-core repulsion = 22944.579765 eV Total energy + Delta-G solvation = -3892.290792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50038 -40.55394 -39.08963 -37.68988 -34.26055 -33.07019 -32.52006 -32.42064 -30.16249 -30.08733 -28.20414 -26.93266 -25.59989 -24.09276 -22.56350 -21.78112 -21.05688 -20.28169 -20.15443 -18.30687 -17.92642 -16.96209 -16.87268 -16.30179 -16.09937 -15.44535 -15.23216 -14.99855 -14.91315 -14.35898 -14.27249 -14.03526 -13.88999 -13.73046 -13.44519 -13.19692 -12.95392 -12.79445 -12.75105 -12.39367 -12.08059 -11.62874 -11.33644 -11.25072 -11.08729 -10.99742 -10.61931 -10.56678 -10.55783 -10.33766 -9.84608 -9.53019 -9.22056 -8.99637 -8.95315 -8.70480 -8.48406 -6.89733 -6.27730 -3.99102 1.06813 2.16255 2.33837 2.76516 2.96749 3.08854 3.14772 3.30384 3.34984 3.51547 3.66115 3.84841 4.14690 4.32232 4.34403 4.51361 4.61212 4.74863 4.88623 4.95651 5.07342 5.09389 5.11468 5.23291 5.25733 5.35809 5.44248 5.50725 5.59472 5.65402 5.73977 5.79036 5.83871 5.93888 6.02383 6.04971 6.35859 6.55821 6.80143 7.06676 7.43639 7.59666 7.80498 7.95304 8.42954 8.49543 9.18520 10.81582 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.003233 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.501126 B = 8659.338642 C =10147.109393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.622 3.378 7 O -0.547 6.547 8 C 0.143 3.857 9 N -0.433 5.433 10 C -0.025 4.025 11 C -0.022 4.022 12 N -0.526 5.526 13 H 0.429 0.571 14 C 0.086 3.914 15 C 0.136 3.864 16 H 0.114 0.886 17 N -0.725 5.725 18 C 0.534 3.466 19 O -0.515 6.515 20 C -0.124 4.124 21 S -0.138 6.138 22 C -0.522 4.522 23 H 0.087 0.913 24 C 0.096 3.904 25 N -0.881 5.881 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.671 13.152 17.773 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.011 4.011 5 N -0.324 5.324 6 C 0.408 3.592 7 O -0.425 6.425 8 C -0.117 4.117 9 N -0.155 5.155 10 C -0.178 4.178 11 C -0.162 4.162 12 N -0.128 5.128 13 H 0.268 0.732 14 C -0.037 4.037 15 C 0.029 3.971 16 H 0.132 0.868 17 N -0.379 5.379 18 C 0.320 3.680 19 O -0.389 6.389 20 C -0.275 4.275 21 S 0.088 5.912 22 C -0.670 4.670 23 H 0.105 0.895 24 C -0.113 4.113 25 N -0.518 5.518 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.198 0.802 36 H 0.205 0.795 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.266 14.154 16.311 25.345 hybrid contribution -0.296 -1.598 1.630 2.302 sum 12.970 12.556 17.941 25.451 Atomic orbital electron populations 1.21716 0.92891 1.02530 1.02791 1.22599 0.97339 0.99722 0.93320 0.88071 1.22156 0.87328 0.94689 0.96920 1.47976 1.29179 1.42930 1.12317 1.16006 0.80256 0.78445 0.84476 1.90838 1.71083 1.65050 1.15509 1.22470 0.98587 1.01057 0.89600 1.70351 1.11562 1.20560 1.13069 1.22628 0.97290 0.99113 0.98770 1.23030 0.97736 1.04798 0.90586 1.42916 1.22665 1.33844 1.13373 0.73168 1.23195 0.96932 1.03997 0.79586 1.22076 0.89196 0.87907 0.97880 0.86803 1.45912 1.45308 1.33054 1.13655 1.20254 0.82500 0.83880 0.81352 1.90704 1.40045 1.62022 1.46105 1.23275 1.01961 0.98021 1.04251 1.84765 1.58631 1.40677 1.07150 1.22332 1.27026 1.15093 1.02499 0.89459 1.24711 0.94501 0.93744 0.98318 1.69943 1.35048 1.18915 1.27875 0.86736 0.80692 0.82103 0.82329 1.19210 1.19974 1.15851 0.92138 0.91916 0.91306 0.90730 0.90749 0.80219 0.79535 0.86758 0.90102 0.76607 0.88512 0.88700 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.72 37.15 0.32 -0.60 16 2 C -0.11 -0.79 3.42 -88.73 -0.30 -1.10 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.11 0.96 6.46 -3.01 -0.02 0.94 16 5 N -0.59 -6.58 3.33 -171.73 -0.57 -7.15 16 6 C 0.62 8.04 7.85 -12.52 -0.10 7.94 16 7 O -0.55 -8.03 17.42 5.28 0.09 -7.93 16 8 C 0.14 1.75 7.80 -154.52 -1.21 0.55 16 9 N -0.43 -5.53 8.28 -11.25 -0.09 -5.62 16 10 C -0.03 -0.25 11.85 -17.95 -0.21 -0.47 16 11 C -0.02 -0.17 12.00 -16.93 -0.20 -0.37 16 12 N -0.53 -4.78 6.14 -10.78 -0.07 -4.84 16 13 H 0.43 2.93 8.96 -40.82 -0.37 2.56 16 14 C 0.09 0.97 5.82 -2.53 -0.01 0.96 16 15 C 0.14 1.41 3.12 -65.78 -0.21 1.20 16 16 H 0.11 1.27 7.64 -51.93 -0.40 0.87 16 17 N -0.72 -8.87 4.62 -51.73 -0.24 -9.11 16 18 C 0.53 9.15 7.85 -10.99 -0.09 9.07 16 19 O -0.51 -10.60 15.55 5.56 0.09 -10.52 16 20 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 21 S -0.14 -3.49 18.54 -107.50 -1.99 -5.49 16 22 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 23 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 24 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 25 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 26 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.23 -5.93 6.73 56.52 0.38 -5.55 16 30 H 0.06 0.41 6.42 -51.93 -0.33 0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.11 1.63 6.17 -51.93 -0.32 1.31 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 4.14 7.03 -40.82 -0.29 3.85 16 40 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -36.98 366.57 -8.28 -45.26 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.49 Total: 4.81 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.59 Total: 3.90 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.19 Total: -52.60 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.98 -8.28 -45.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072025713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.813 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds