Wall clock time and date at job start Tue Mar 31 2020 20:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.78199 * 2 1 4 4 C 1.54332 * 110.85182 * 236.92719 * 2 1 3 5 5 N 1.47023 * 107.26961 * 219.67381 * 4 2 1 6 6 C 1.34773 * 125.65071 * 178.85296 * 5 4 2 7 7 O 1.21613 * 119.99881 * 359.71426 * 6 5 4 8 8 C 1.47404 * 120.00190 * 179.44233 * 6 5 4 9 9 N 1.31610 * 125.86340 * 0.29115 * 8 6 5 10 10 C 1.33105 * 109.09729 * 180.02562 * 9 8 6 11 11 C 1.35565 * 108.34713 * 0.02562 * 10 9 8 12 12 N 1.35403 * 107.15768 * 359.73358 * 11 10 9 13 13 H 0.96999 * 126.43290 * 180.28088 * 12 11 10 14 14 C 1.47429 * 108.70139 * 358.58464 * 5 4 2 15 15 C 1.54909 * 104.83064 * 24.35611 * 14 5 4 16 16 H 1.08997 * 111.00457 * 204.87678 * 15 14 5 17 17 N 1.46503 * 111.00340 * 81.06317 * 15 14 5 18 18 C 1.34777 * 120.00030 * 86.45341 * 17 15 14 19 19 O 1.21280 * 119.99826 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00403 * 179.97438 * 18 17 15 21 21 S 1.80997 * 109.47143 * 179.97438 * 20 18 17 22 22 C 1.76200 * 99.99650 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00573 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00180 * 179.97438 * 22 21 20 25 25 N 1.31634 * 119.99397 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00257 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47286 * 90.00192 * 26 24 22 28 28 H 1.48499 * 109.47158 * 210.00383 * 26 24 22 29 29 H 1.48505 * 109.47230 * 330.00301 * 26 24 22 30 30 H 1.08998 * 109.46827 * 296.76037 * 1 2 3 31 31 H 1.08998 * 109.46950 * 56.76064 * 1 2 3 32 32 H 1.08999 * 109.46800 * 176.76499 * 1 2 3 33 33 H 1.08999 * 109.99014 * 100.19873 * 4 2 1 34 34 H 1.08998 * 109.78107 * 339.03141 * 4 2 1 35 35 H 1.08003 * 125.82300 * 180.02562 * 10 9 8 36 36 H 1.07996 * 126.41695 * 179.97438 * 11 10 9 37 37 H 1.08998 * 110.36548 * 143.19539 * 14 5 4 38 38 H 1.08999 * 110.36380 * 265.52047 * 14 5 4 39 39 H 0.97003 * 120.00108 * 266.45004 * 17 15 14 40 40 H 1.09000 * 109.47014 * 300.00507 * 20 18 17 41 41 H 1.09000 * 109.46286 * 59.99921 * 20 18 17 42 42 H 0.97003 * 119.99741 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0794 -0.7870 -1.2086 5 7 3.2446 -1.5508 -0.7389 6 6 3.9924 -2.3836 -1.4896 7 8 3.7186 -2.5569 -2.6618 8 6 5.1457 -3.0799 -0.8915 9 7 5.5443 -2.9781 0.3587 10 6 6.6155 -3.7474 0.5383 11 6 6.9055 -4.3565 -0.6376 12 7 5.9821 -3.9455 -1.5387 13 1 5.9261 -4.2136 -2.4692 14 6 3.4633 -1.2498 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 2.1850 -0.1523 2.0875 17 7 1.2272 -1.9488 1.5145 18 6 1.2971 -2.5414 2.7230 19 8 2.0657 -2.1202 3.5613 20 6 0.4205 -3.7275 3.0326 21 16 0.7456 -4.2937 4.7206 22 6 -0.3797 -5.6465 4.8115 23 1 -1.0003 -5.8908 3.9620 24 6 -0.4681 -6.3989 5.9746 25 7 0.2886 -6.1014 7.0099 26 14 -1.6616 -7.8325 6.0713 27 1 -0.9835 -9.0727 5.6159 28 1 -2.1169 -8.0038 7.4743 29 1 -2.8333 -7.5607 5.2003 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 2.3815 -0.0970 -1.9964 34 1 1.3156 -1.4688 -1.5828 35 1 7.1606 -3.8661 1.4631 36 1 7.7181 -5.0439 -0.8203 37 1 3.7961 -2.1426 1.2170 38 1 4.1932 -0.4478 0.7984 39 1 0.6127 -2.2859 0.8439 40 1 -0.6266 -3.4390 2.9409 41 1 0.6382 -4.5329 2.3312 42 1 0.2272 -6.6274 7.8226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072025714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:13 Heat of formation + Delta-G solvation = -0.347559 kcal Electronic energy + Delta-G solvation = -26810.950531 eV Core-core repulsion = 22918.664112 eV Total energy + Delta-G solvation = -3892.286418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44981 -40.49134 -38.99617 -37.60746 -34.19682 -33.00306 -32.46031 -32.40301 -30.10773 -29.98128 -28.09487 -26.89819 -25.46541 -24.04336 -22.50722 -21.72858 -20.96294 -20.21184 -20.08366 -18.25022 -17.88175 -16.91338 -16.81185 -16.22531 -16.03961 -15.38120 -15.16751 -14.85293 -14.78827 -14.30259 -14.21890 -13.99953 -13.94967 -13.69645 -13.31153 -13.11624 -12.95052 -12.70880 -12.53935 -12.34771 -11.94953 -11.55896 -11.27635 -11.05378 -11.04203 -11.00325 -10.74362 -10.56094 -10.50858 -10.27438 -9.79733 -9.39808 -9.14438 -9.04967 -8.88968 -8.64426 -8.21321 -6.47286 -6.20174 -3.90067 1.11429 2.21033 2.38843 3.03069 3.10533 3.13676 3.20095 3.23263 3.28829 3.32968 3.72295 3.90002 4.19326 4.22151 4.36956 4.55387 4.65603 4.93751 5.00894 5.07421 5.14565 5.15043 5.19337 5.27476 5.39221 5.44695 5.53602 5.63455 5.64849 5.69656 5.80847 5.89626 5.91565 5.98058 6.10657 6.16562 6.41839 6.65741 6.84928 7.11596 7.48861 7.61139 7.70847 7.85340 8.36766 8.63308 9.25295 10.87222 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.003116 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.586277 B = 8984.773300 C =10415.690588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.622 3.378 7 O -0.549 6.549 8 C 0.143 3.857 9 N -0.431 5.431 10 C -0.024 4.024 11 C -0.023 4.023 12 N -0.526 5.526 13 H 0.429 0.571 14 C 0.086 3.914 15 C 0.137 3.863 16 H 0.112 0.888 17 N -0.727 5.727 18 C 0.535 3.465 19 O -0.512 6.512 20 C -0.154 4.154 21 S -0.057 6.057 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.181 0.819 36 H 0.187 0.813 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 10.301 -19.344 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.010 4.010 5 N -0.323 5.323 6 C 0.408 3.592 7 O -0.427 6.427 8 C -0.118 4.118 9 N -0.154 5.154 10 C -0.177 4.177 11 C -0.162 4.162 12 N -0.129 5.129 13 H 0.268 0.732 14 C -0.037 4.037 15 C 0.030 3.970 16 H 0.130 0.870 17 N -0.382 5.382 18 C 0.321 3.679 19 O -0.386 6.386 20 C -0.304 4.304 21 S 0.170 5.830 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.198 0.802 36 H 0.204 0.796 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.338 11.345 -17.822 23.099 hybrid contribution -1.369 -2.383 -2.230 3.539 sum 7.969 8.962 -20.052 23.365 Atomic orbital electron populations 1.21716 0.92960 1.02459 1.02783 1.22572 0.97274 0.99765 0.93372 0.88115 1.22130 0.87424 0.94610 0.96877 1.47982 1.29290 1.42736 1.12328 1.16007 0.80249 0.78462 0.84456 1.90835 1.71202 1.65100 1.15519 1.22467 0.98652 1.00985 0.89654 1.70366 1.11495 1.20551 1.12990 1.22640 0.97095 0.99272 0.98696 1.23024 0.97485 1.05000 0.90715 1.42912 1.22464 1.33866 1.13609 0.73220 1.23202 0.96975 1.04066 0.79476 1.22053 0.89261 0.87956 0.97689 0.86979 1.45975 1.43401 1.32843 1.15999 1.20281 0.82956 0.83701 0.80962 1.90709 1.37947 1.63539 1.46390 1.23529 1.01525 0.97858 1.07509 1.85374 1.54555 1.37963 1.05104 1.22879 1.26000 1.16802 1.02752 0.91010 1.24977 0.96202 0.97643 0.94682 1.70020 1.37711 1.39057 1.03485 0.86186 0.80461 0.81405 0.77558 1.20306 1.20742 1.19712 0.91276 0.91941 0.92180 0.90779 0.90811 0.80180 0.79554 0.86671 0.90142 0.76763 0.89296 0.89459 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.72 37.16 0.32 -0.64 16 2 C -0.11 -0.84 3.41 -88.78 -0.30 -1.14 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 1.01 6.47 -3.06 -0.02 0.99 16 5 N -0.59 -6.90 3.33 -171.79 -0.57 -7.48 16 6 C 0.62 8.35 7.84 -12.53 -0.10 8.25 16 7 O -0.55 -8.26 17.42 5.27 0.09 -8.17 16 8 C 0.14 1.82 7.80 -154.53 -1.21 0.62 16 9 N -0.43 -5.80 8.28 -11.26 -0.09 -5.89 16 10 C -0.02 -0.26 11.85 -17.95 -0.21 -0.47 16 11 C -0.02 -0.19 12.00 -16.93 -0.20 -0.39 16 12 N -0.53 -5.02 6.14 -10.78 -0.07 -5.08 16 13 H 0.43 3.09 8.96 -40.82 -0.37 2.72 16 14 C 0.09 1.03 5.82 -2.53 -0.01 1.02 16 15 C 0.14 1.51 3.07 -65.78 -0.20 1.31 16 16 H 0.11 1.32 7.73 -51.93 -0.40 0.92 16 17 N -0.73 -9.44 4.69 -51.73 -0.24 -9.68 16 18 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 19 O -0.51 -11.19 15.61 5.56 0.09 -11.11 16 20 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 22 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 25 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 26 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 35 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 1.75 6.18 -51.93 -0.32 1.43 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 4.36 6.89 -40.82 -0.28 4.08 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -37.31 369.23 -8.79 -46.09 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.45 Total: 5.16 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.60 Total: 3.30 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.24 Total: -53.54 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.31 -8.79 -46.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072025714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.744 kcal (2) G-P(sol) polarization free energy of solvation -37.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds