Wall clock time and date at job start Tue Mar 31 2020 20:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21523 * 120.00157 * 359.97438 * 7 6 5 9 9 C 1.48149 * 120.00102 * 179.97438 * 7 6 5 10 10 C 1.39438 * 120.10020 * 180.02562 * 9 7 6 11 11 N 1.32079 * 119.87499 * 180.02562 * 10 9 7 12 12 C 1.32135 * 120.07110 * 359.97438 * 11 10 9 13 13 C 1.38726 * 120.19582 * 0.02562 * 12 11 10 14 14 N 1.31801 * 120.12561 * 359.72259 * 13 12 11 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08003 * 120.06101 * 359.97006 * 10 9 7 37 37 H 1.08001 * 119.90132 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.93796 * 179.97438 * 13 12 11 39 39 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 41 41 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 42 42 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1599 -0.7988 2.0228 9 6 5.8678 -2.0379 3.9852 10 6 7.2338 -2.0753 4.2624 11 7 7.6692 -2.6996 5.3418 12 6 6.8121 -3.2870 6.1580 13 6 5.4524 -3.2516 5.8851 14 7 5.0090 -2.6266 4.8127 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 3.2408 -2.3839 -9.0587 26 1 4.3279 -0.4955 -10.1223 27 1 5.5153 -1.7977 -8.4560 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 7.9346 -1.5956 3.5951 37 1 7.1711 -3.7963 7.0401 38 1 4.7555 -3.7335 6.5548 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075459271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:41 Heat of formation + Delta-G solvation = -31.570299 kcal Electronic energy + Delta-G solvation = -25083.681515 eV Core-core repulsion = 21190.041177 eV Total energy + Delta-G solvation = -3893.640338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79278 -39.85032 -39.31393 -36.68569 -35.20483 -34.54688 -32.40983 -32.38487 -31.76041 -29.47943 -28.46558 -26.11181 -25.46068 -25.14539 -23.60563 -21.65551 -21.21486 -20.33564 -18.72851 -18.15919 -17.80304 -17.34730 -16.62699 -16.33158 -16.06872 -15.76639 -15.60166 -15.09853 -14.89499 -14.78136 -14.42485 -14.22610 -13.77155 -13.60579 -13.42637 -13.22359 -12.91239 -12.63629 -12.33655 -12.15351 -11.94985 -11.94152 -11.77867 -11.56902 -11.11996 -11.02201 -11.01678 -10.77570 -10.73722 -10.08394 -9.80335 -9.74219 -9.47098 -9.37371 -9.04259 -8.91323 -8.21707 -6.47380 -6.19265 -3.89659 -0.20435 0.41222 2.24825 2.53368 3.04467 3.10982 3.21160 3.25398 3.29230 3.32836 3.35527 3.59160 3.72414 3.81573 4.20697 4.22819 4.42444 4.51887 4.55768 4.69092 4.72514 4.91395 5.15703 5.16538 5.21276 5.30169 5.32626 5.53895 5.59790 5.62776 5.67299 5.71340 5.91191 5.97451 6.00309 6.15681 6.17674 6.45768 6.65414 6.91114 7.12645 7.61493 7.69471 7.71350 8.37275 8.62792 9.25908 10.88079 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.001965 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.335710 B =14243.540086 C =15704.583820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.114 3.886 6 N -0.708 5.708 7 C 0.572 3.428 8 O -0.519 6.519 9 C 0.030 3.970 10 C 0.111 3.889 11 N -0.439 5.439 12 C 0.073 3.927 13 C 0.050 3.950 14 N -0.414 5.414 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -11.097 31.174 33.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.009 4.009 6 N -0.360 5.360 7 C 0.355 3.645 8 O -0.394 6.394 9 C -0.111 4.111 10 C -0.048 4.048 11 N -0.153 5.153 12 C -0.088 4.088 13 C -0.113 4.113 14 N -0.132 5.132 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.202 0.798 37 H 0.194 0.806 38 H 0.196 0.804 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.215 -8.523 30.330 31.506 hybrid contribution 0.499 -2.897 -0.355 2.961 sum 0.714 -11.420 29.975 32.085 Atomic orbital electron populations 1.22171 0.94963 1.02124 1.02855 1.20776 0.94210 0.97747 0.83147 0.88991 1.22112 0.94267 1.02247 0.98946 1.21542 0.93946 0.98180 0.87220 1.45828 1.07073 1.55985 1.27113 1.17635 0.83000 0.80077 0.83832 1.90878 1.55463 1.45016 1.48025 1.22225 0.92697 0.99627 0.96577 1.23922 0.94369 0.92909 0.93597 1.68668 1.38050 1.05854 1.02715 1.24170 0.91277 0.94756 0.98637 1.23875 0.95982 0.96682 0.94752 1.68325 1.38090 1.04313 1.02444 1.46135 1.69530 1.13884 1.09567 1.20296 0.76732 0.87207 0.83742 1.90700 1.48273 1.15702 1.84340 1.23542 1.03643 1.04880 0.98457 1.85378 1.86027 1.12896 0.98970 1.22829 1.50913 0.98136 0.96543 0.91005 1.24989 0.95118 0.95540 0.97934 1.70009 1.45452 1.13185 1.21645 0.86227 0.79339 0.80002 0.79953 1.19973 1.20819 1.19931 0.91404 0.92519 0.91854 0.89599 0.90486 0.90423 0.90593 0.75438 0.79817 0.80555 0.80413 0.76919 0.89223 0.89289 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.15 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.11 1.03 5.56 -4.04 -0.02 1.00 16 6 N -0.71 -5.86 5.55 -61.14 -0.34 -6.20 16 7 C 0.57 6.02 7.81 -12.19 -0.10 5.93 16 8 O -0.52 -7.30 16.35 5.35 0.09 -7.21 16 9 C 0.03 0.26 6.75 -82.84 -0.56 -0.30 16 10 C 0.11 0.95 10.77 -17.00 -0.18 0.76 16 11 N -0.44 -3.40 10.49 -12.71 -0.13 -3.54 16 12 C 0.07 0.33 11.23 -17.24 -0.19 0.14 16 13 C 0.05 0.21 11.22 -17.38 -0.20 0.02 16 14 N -0.41 -2.90 9.71 -9.62 -0.09 -2.99 16 15 N -0.74 -9.18 4.53 -53.80 -0.24 -9.42 16 16 C 0.53 9.72 7.81 -10.98 -0.09 9.64 16 17 O -0.52 -11.48 15.52 5.55 0.09 -11.39 16 18 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.82 7.75 -51.93 -0.40 0.42 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 2.54 7.82 -40.82 -0.32 2.22 16 36 H 0.18 1.48 7.65 -52.48 -0.40 1.08 16 37 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 38 H 0.18 0.10 8.06 -52.49 -0.42 -0.32 16 39 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -37.95 382.83 -7.88 -45.83 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.64 Total: 1.77 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.87 Total: 0.24 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.08 Total: -47.79 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.17 Total: -18.60 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.95 -7.88 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075459271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.259 kcal (2) G-P(sol) polarization free energy of solvation -37.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds