Wall clock time and date at job start Tue Mar 31 2020 20:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.52999 * 109.46933 * 119.99441 * 2 1 3 5 5 C 1.53000 * 109.46931 * 184.99857 * 4 2 1 6 6 N 1.46507 * 109.47182 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99949 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99797 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99654 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.46806 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00107 * 180.02562 * 10 9 7 12 12 H 1.08007 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00172 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00143 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47316 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47214 * 120.00247 * 15 13 11 18 18 H 1.48502 * 109.46945 * 240.00025 * 15 13 11 19 19 N 1.46496 * 109.46840 * 239.99470 * 2 1 3 20 20 C 1.34773 * 120.00030 * 85.00366 * 19 2 1 21 21 O 1.21558 * 119.99847 * 359.97438 * 20 19 2 22 22 C 1.47835 * 120.00282 * 179.97438 * 20 19 2 23 23 C 1.39948 * 120.93699 * 359.94958 * 22 20 19 24 24 N 1.32144 * 118.92292 * 180.02562 * 23 22 20 25 25 C 1.31874 * 120.96683 * 0.02562 * 24 23 22 26 26 N 1.31870 * 122.09686 * 0.02562 * 25 24 23 27 27 C 1.32145 * 120.96699 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47192 * 300.00253 * 1 2 3 30 30 H 1.08996 * 109.47409 * 60.00173 * 1 2 3 31 31 H 1.09002 * 109.47720 * 304.99969 * 4 2 1 32 32 H 1.09000 * 109.47216 * 65.00347 * 4 2 1 33 33 H 1.08997 * 109.47053 * 300.00075 * 5 4 2 34 34 H 1.09004 * 109.47218 * 60.00328 * 5 4 2 35 35 H 0.97001 * 119.99324 * 359.97438 * 6 5 4 36 36 H 1.08997 * 109.47078 * 300.00398 * 9 7 6 37 37 H 1.09000 * 109.46524 * 60.00362 * 9 7 6 38 38 H 0.97000 * 120.00098 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00179 * 264.99824 * 19 2 1 40 40 H 1.07995 * 120.53671 * 0.05244 * 23 22 20 41 41 H 1.07999 * 118.95094 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.53751 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0533 -1.3042 2.5097 7 6 5.3741 -1.3396 2.7753 8 8 6.1583 -0.7991 2.0245 9 6 5.8764 -2.0500 4.0059 10 16 7.6801 -1.9211 4.0828 11 6 7.9873 -2.8112 5.5721 12 1 7.1636 -3.2353 6.1273 13 6 9.2877 -2.9682 6.0311 14 7 10.2915 -2.4519 5.3541 15 14 9.6133 -3.9125 7.6097 16 1 8.3259 -4.3889 8.1761 17 1 10.4867 -5.0776 7.3184 18 1 10.2863 -3.0220 8.5892 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0185 -2.3571 21 8 1.8576 1.1609 -2.4118 22 6 2.6403 -0.7153 -3.5640 23 6 2.9802 -2.0723 -3.5229 24 7 3.4174 -2.6552 -4.6252 25 6 3.5354 -1.9775 -5.7503 26 7 3.2275 -0.6979 -5.8331 27 6 2.7826 -0.0361 -4.7794 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2616 2.1371 32 1 1.7517 -1.7714 1.2057 33 1 3.9994 -1.0728 0.4261 34 1 3.8532 0.4371 1.3573 35 1 3.4258 -1.7356 3.1107 36 1 5.4415 -1.5907 4.8935 37 1 5.5883 -3.1003 3.9620 38 1 11.2003 -2.5619 5.6748 39 1 2.2490 -1.6318 -1.1525 40 1 2.8862 -2.6339 -2.6053 41 1 3.8965 -2.4864 -6.6318 42 1 2.5320 1.0117 -4.8551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:42 Heat of formation + Delta-G solvation = -31.975518 kcal Electronic energy + Delta-G solvation = -25210.045149 eV Core-core repulsion = 21316.387240 eV Total energy + Delta-G solvation = -3893.657910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70778 -40.06893 -39.18873 -36.99623 -34.70159 -34.26729 -33.21626 -32.45569 -31.54309 -30.11646 -28.21009 -25.90795 -25.51855 -25.08283 -23.62178 -22.00959 -21.19394 -20.39529 -18.67848 -18.20971 -17.91724 -17.63237 -16.67231 -16.27420 -16.10045 -15.72325 -15.43041 -15.03160 -14.82969 -14.74658 -14.22476 -14.19732 -14.09749 -14.00054 -13.81033 -13.28296 -13.01105 -12.62987 -12.47363 -12.24679 -12.16397 -11.75567 -11.62895 -11.44589 -11.37206 -11.09197 -11.04735 -10.78031 -10.42551 -10.29365 -9.84691 -9.83667 -9.66040 -9.44839 -9.10637 -8.96738 -8.26296 -6.53201 -6.24330 -3.95182 -0.11288 0.48460 2.34013 2.51092 2.97029 3.04152 3.19601 3.25781 3.28954 3.30043 3.48899 3.60767 3.63362 3.87086 4.10651 4.17658 4.28810 4.38109 4.46572 4.62180 4.77111 4.95962 4.98231 5.10993 5.13717 5.15425 5.21006 5.25673 5.48426 5.57345 5.62766 5.70319 5.75122 5.84028 5.84837 5.97412 6.09369 6.28664 6.52269 6.88822 7.43787 7.57125 7.62185 7.62849 8.32718 8.55191 9.21108 10.83155 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.001967 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.780369 B =14233.327739 C =15479.597445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.097 0.903 4 C -0.141 4.141 5 C 0.120 3.880 6 N -0.741 5.741 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.718 5.718 20 C 0.573 3.427 21 O -0.526 6.526 22 C -0.244 4.244 23 C 0.186 3.814 24 N -0.520 5.520 25 C 0.316 3.684 26 N -0.522 5.522 27 C 0.210 3.790 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.400 0.600 40 H 0.171 0.829 41 H 0.204 0.796 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.167 0.837 -15.845 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.115 0.885 4 C -0.179 4.179 5 C -0.004 4.004 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.371 5.371 20 C 0.358 3.642 21 O -0.403 6.403 22 C -0.252 4.252 23 C 0.019 3.981 24 N -0.233 5.233 25 C 0.030 3.970 26 N -0.235 5.235 27 C 0.043 3.957 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.236 0.764 40 H 0.188 0.812 41 H 0.220 0.780 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.523 2.155 -17.974 28.123 hybrid contribution -1.111 -1.574 2.962 3.533 sum -22.633 0.581 -15.012 27.166 Atomic orbital electron populations 1.22172 0.94454 1.02434 1.03053 1.20971 0.94347 0.97878 0.82630 0.88473 1.22147 0.95522 1.02021 0.98193 1.21262 0.92519 0.98135 0.88512 1.45998 1.07857 1.58645 1.27060 1.20338 0.81457 0.79713 0.86824 1.90715 1.54960 1.44247 1.49088 1.23528 1.06915 1.02529 0.97424 1.85429 0.92133 1.72671 1.33239 1.22900 0.95491 1.40041 1.09902 0.90863 1.25003 0.95062 0.95661 0.97925 1.70024 0.99375 1.42575 1.38269 0.86109 0.78404 0.79270 0.81658 1.19619 1.20555 1.20551 1.46002 1.67321 1.14134 1.09621 1.17739 0.77555 0.86359 0.82533 1.90817 1.49708 1.15044 1.84711 1.21810 1.08445 0.97279 0.97620 1.23490 0.86955 0.90607 0.97072 1.68501 1.14742 1.40104 0.99951 1.25348 0.88848 0.87175 0.95628 1.68606 1.12988 1.10255 1.31627 1.23552 0.85612 1.00671 0.85854 0.92233 0.91113 0.91798 0.89102 0.90390 0.91765 0.91435 0.76800 0.89201 0.89221 0.92206 0.76444 0.81190 0.77996 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.48 37.16 0.35 -0.51 16 2 C 0.15 0.91 2.57 -67.93 -0.17 0.74 16 3 H 0.10 0.79 7.58 -51.93 -0.39 0.40 16 4 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 5 C 0.12 1.18 5.56 -4.04 -0.02 1.16 16 6 N -0.74 -8.71 5.56 -60.29 -0.33 -9.05 16 7 C 0.53 9.46 7.85 -10.98 -0.09 9.37 16 8 O -0.52 -11.50 15.86 5.56 0.09 -11.41 16 9 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 15 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.72 -4.48 4.49 -54.75 -0.25 -4.73 16 20 C 0.57 4.97 7.75 -12.34 -0.10 4.88 16 21 O -0.53 -6.23 16.11 5.31 0.09 -6.14 16 22 C -0.24 -1.92 5.91 -104.69 -0.62 -2.54 16 23 C 0.19 1.30 10.81 -16.78 -0.18 1.12 16 24 N -0.52 -4.29 10.42 -14.25 -0.15 -4.44 16 25 C 0.32 2.36 12.27 -92.02 -1.13 1.23 16 26 N -0.52 -4.51 10.42 -14.24 -0.15 -4.65 16 27 C 0.21 1.75 10.88 -16.78 -0.18 1.57 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.39 8.47 -40.82 -0.35 3.04 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.40 1.62 6.74 -40.82 -0.28 1.34 16 40 H 0.17 0.67 6.54 -52.49 -0.34 0.33 16 41 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.18 1.32 7.74 -52.49 -0.41 0.91 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -38.12 380.76 -8.83 -46.95 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.52 Total: 0.17 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.85 Total: 0.54 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.14 Total: -48.15 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.12 -8.83 -46.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.975 kcal (2) G-P(sol) polarization free energy of solvation -38.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds