Wall clock time and date at job start Tue Mar 31 2020 20:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.52999 * 109.46933 * 119.99441 * 2 1 3 5 5 C 1.53000 * 109.46931 * 184.99857 * 4 2 1 6 6 N 1.46507 * 109.47182 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99949 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99797 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99654 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.46806 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00107 * 180.02562 * 10 9 7 12 12 H 1.08007 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00172 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00143 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47316 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47214 * 120.00247 * 15 13 11 18 18 H 1.48502 * 109.46945 * 240.00025 * 15 13 11 19 19 N 1.46496 * 109.46840 * 239.99470 * 2 1 3 20 20 C 1.34773 * 120.00030 * 85.00366 * 19 2 1 21 21 O 1.21558 * 119.99847 * 359.97438 * 20 19 2 22 22 C 1.47835 * 120.00282 * 179.97438 * 20 19 2 23 23 C 1.39948 * 120.93699 * 359.94958 * 22 20 19 24 24 N 1.32144 * 118.92292 * 180.02562 * 23 22 20 25 25 C 1.31874 * 120.96683 * 0.02562 * 24 23 22 26 26 N 1.31870 * 122.09686 * 0.02562 * 25 24 23 27 27 C 1.32145 * 120.96699 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47192 * 300.00253 * 1 2 3 30 30 H 1.08996 * 109.47409 * 60.00173 * 1 2 3 31 31 H 1.09002 * 109.47720 * 304.99969 * 4 2 1 32 32 H 1.09000 * 109.47216 * 65.00347 * 4 2 1 33 33 H 1.08997 * 109.47053 * 300.00075 * 5 4 2 34 34 H 1.09004 * 109.47218 * 60.00328 * 5 4 2 35 35 H 0.97001 * 119.99324 * 359.97438 * 6 5 4 36 36 H 1.08997 * 109.47078 * 300.00398 * 9 7 6 37 37 H 1.09000 * 109.46524 * 60.00362 * 9 7 6 38 38 H 0.97000 * 120.00098 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00179 * 264.99824 * 19 2 1 40 40 H 1.07995 * 120.53671 * 0.05244 * 23 22 20 41 41 H 1.07999 * 118.95094 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.53751 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0533 -1.3042 2.5097 7 6 5.3741 -1.3396 2.7753 8 8 6.1583 -0.7991 2.0245 9 6 5.8764 -2.0500 4.0059 10 16 7.6801 -1.9211 4.0828 11 6 7.9873 -2.8112 5.5721 12 1 7.1636 -3.2353 6.1273 13 6 9.2877 -2.9682 6.0311 14 7 10.2915 -2.4519 5.3541 15 14 9.6133 -3.9125 7.6097 16 1 8.3259 -4.3889 8.1761 17 1 10.4867 -5.0776 7.3184 18 1 10.2863 -3.0220 8.5892 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0185 -2.3571 21 8 1.8576 1.1609 -2.4118 22 6 2.6403 -0.7153 -3.5640 23 6 2.9802 -2.0723 -3.5229 24 7 3.4174 -2.6552 -4.6252 25 6 3.5354 -1.9775 -5.7503 26 7 3.2275 -0.6979 -5.8331 27 6 2.7826 -0.0361 -4.7794 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2616 2.1371 32 1 1.7517 -1.7714 1.2057 33 1 3.9994 -1.0728 0.4261 34 1 3.8532 0.4371 1.3573 35 1 3.4258 -1.7356 3.1107 36 1 5.4415 -1.5907 4.8935 37 1 5.5883 -3.1003 3.9620 38 1 11.2003 -2.5619 5.6748 39 1 2.2490 -1.6318 -1.1525 40 1 2.8862 -2.6339 -2.6053 41 1 3.8965 -2.4864 -6.6318 42 1 2.5320 1.0117 -4.8551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:41 Heat of formation + Delta-G solvation = -60.848635 kcal Electronic energy + Delta-G solvation = -25211.297181 eV Core-core repulsion = 21316.387240 eV Total energy + Delta-G solvation = -3894.909942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30587 -40.81859 -40.42551 -37.74454 -35.68063 -34.94574 -34.58138 -33.88101 -32.31998 -31.19321 -29.19525 -27.65034 -26.49877 -25.67091 -24.39275 -22.64047 -21.92253 -21.57156 -19.85732 -19.25679 -18.78020 -18.29990 -17.70122 -17.34439 -17.16451 -16.87660 -16.61512 -16.40575 -15.85630 -15.66980 -15.41602 -15.07076 -14.82337 -14.74349 -14.64476 -14.46313 -14.37568 -13.61105 -13.54414 -13.15454 -12.99262 -12.91560 -12.81293 -12.62980 -12.41991 -12.38382 -12.06060 -11.91969 -11.69763 -11.15736 -11.12894 -10.96256 -10.91558 -10.45105 -10.26251 -10.24438 -10.07632 -8.66510 -8.34526 -6.12506 -0.70403 -0.11185 1.28147 1.41927 1.48429 1.58974 1.62699 1.68678 1.94361 2.25990 2.30526 2.69061 2.99324 2.99919 3.05642 3.30394 3.32787 3.55400 3.70905 3.79054 3.86602 4.05450 4.09936 4.28288 4.32681 4.44862 4.47971 4.53279 4.57932 4.63883 4.81318 4.90867 5.02779 5.13759 5.15281 5.34198 5.42597 5.43434 5.45540 5.70421 6.20459 6.34051 6.54071 6.85566 7.02288 7.07091 7.27750 8.74908 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.001967 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.780369 B =14233.327739 C =15479.597445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.074 0.926 4 C -0.123 4.123 5 C 0.117 3.883 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.570 6.570 9 C -0.129 4.129 10 S -0.158 6.158 11 C -0.543 4.543 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.706 5.706 20 C 0.573 3.427 21 O -0.565 6.565 22 C -0.251 4.251 23 C 0.191 3.809 24 N -0.536 5.536 25 C 0.313 3.687 26 N -0.539 5.539 27 C 0.200 3.800 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.201 0.799 41 H 0.231 0.769 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.554 -1.267 -14.281 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.092 0.908 4 C -0.161 4.161 5 C -0.006 4.006 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.069 5.931 11 C -0.691 4.691 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.201 1.201 19 N -0.359 5.359 20 C 0.359 3.641 21 O -0.445 6.445 22 C -0.258 4.258 23 C 0.023 3.977 24 N -0.249 5.249 25 C 0.028 3.972 26 N -0.252 5.252 27 C 0.033 3.967 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.251 0.749 40 H 0.217 0.783 41 H 0.247 0.753 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.985 0.012 -16.388 29.049 hybrid contribution -0.480 -0.893 2.402 2.607 sum -24.465 -0.882 -13.987 28.194 Atomic orbital electron populations 1.22105 0.93163 1.03426 1.02707 1.20980 0.95217 0.96891 0.82782 0.90823 1.22068 0.91708 1.03958 0.98363 1.21411 0.95577 0.96516 0.87144 1.45686 1.05918 1.57199 1.27595 1.20104 0.83074 0.79278 0.85870 1.90706 1.56818 1.46693 1.50590 1.23371 1.00738 1.04536 0.99341 1.85641 1.00066 1.73340 1.34072 1.23235 0.96178 1.39812 1.09847 0.89733 1.26150 0.94759 0.96603 1.01849 1.70193 0.99937 1.44288 1.40486 0.84895 0.78836 0.77564 0.76582 1.17825 1.20011 1.20090 1.45951 1.66295 1.14678 1.08962 1.17866 0.77107 0.85925 0.83243 1.90797 1.51642 1.16700 1.85346 1.21759 1.09150 0.97784 0.97148 1.23953 0.85600 0.90274 0.97835 1.68589 1.15457 1.40410 1.00475 1.25943 0.87944 0.86909 0.96446 1.68649 1.13771 1.10946 1.31837 1.23684 0.85651 1.01014 0.86317 0.90495 0.89871 0.93801 0.87192 0.87443 0.92424 0.93542 0.74265 0.87134 0.86896 0.92051 0.74904 0.78283 0.75298 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 71.98 0.68 -0.59 16 2 C 0.15 1.54 2.57 44.99 0.12 1.65 16 3 H 0.07 1.18 7.58 -2.39 -0.02 1.16 16 4 C -0.12 -0.90 4.87 30.59 0.15 -0.75 16 5 C 0.12 2.07 5.56 86.38 0.48 2.55 16 6 N -0.71 -14.69 5.56 -463.04 -2.57 -17.26 16 7 C 0.53 18.29 7.85 87.66 0.69 18.98 16 8 O -0.57 -25.77 15.86 -3.03 -0.05 -25.81 16 9 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16 10 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 11 C -0.54 -30.46 9.50 67.95 0.65 -29.81 16 12 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.62 5.49 84.86 0.47 1.08 16 14 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 15 Si 1.00 43.00 29.55 68.60 2.03 45.02 16 16 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 19 N -0.71 -7.72 4.49 -445.42 -2.00 -9.72 16 20 C 0.57 9.86 7.75 86.78 0.67 10.53 16 21 O -0.57 -13.89 16.11 -3.90 -0.06 -13.95 16 22 C -0.25 -3.90 5.91 -19.91 -0.12 -4.02 16 23 C 0.19 2.41 10.81 85.06 0.92 3.33 16 24 N -0.54 -8.23 10.42 -198.98 -2.07 -10.30 16 25 C 0.31 4.45 12.27 180.84 2.22 6.67 16 26 N -0.54 -9.31 10.42 -198.98 -2.07 -11.39 16 27 C 0.20 3.44 10.88 85.06 0.93 4.36 16 28 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 1.13 7.75 -2.39 -0.02 1.12 16 34 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.42 5.27 8.47 -92.71 -0.79 4.48 16 36 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.41 2.23 6.74 -92.71 -0.62 1.61 16 40 H 0.20 1.07 6.54 -2.91 -0.02 1.05 16 41 H 0.23 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.18 2.91 7.74 -2.91 -0.02 2.88 16 Total: -1.00 -87.18 380.76 0.27 -86.91 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -0.34 Total: 12.23 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 8.29 Total: 9.62 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -8.43 Total: -104.20 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.11 Total: -39.77 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -87.18 0.27 -86.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.066 kcal (2) G-P(sol) polarization free energy of solvation -87.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds