Wall clock time and date at job start Tue Mar 31 2020 20:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99877 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00034 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99746 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99887 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00182 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99844 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00159 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00131 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47054 * 90.00214 * 15 13 11 17 17 H 1.48497 * 109.47486 * 210.00276 * 15 13 11 18 18 H 1.48506 * 109.47001 * 330.00718 * 15 13 11 19 19 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 20 20 C 1.34779 * 119.99965 * 85.00573 * 19 2 1 21 21 O 1.21469 * 120.00017 * 359.97438 * 20 19 2 22 22 C 1.48535 * 119.99764 * 179.97438 * 20 19 2 23 23 N 1.32464 * 119.19080 * 359.72392 * 22 20 19 24 24 C 1.32110 * 120.77216 * 179.76045 * 23 22 20 25 25 C 1.38807 * 119.15902 * 0.50652 * 24 23 22 26 26 C 1.38793 * 118.50747 * 359.75018 * 25 24 23 27 27 N 1.32110 * 119.16709 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 32 32 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 33 33 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 34 34 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 35 35 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.47074 * 299.99803 * 9 7 6 37 37 H 1.09000 * 109.47343 * 59.99937 * 9 7 6 38 38 H 0.97000 * 120.00053 * 179.97438 * 14 13 11 39 39 H 0.97003 * 119.99991 * 264.99646 * 19 2 1 40 40 H 1.07998 * 120.41807 * 180.25865 * 24 23 22 41 41 H 1.08003 * 120.74233 * 179.77215 * 25 24 23 42 42 H 1.08000 * 120.41542 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3399 2.7753 8 8 6.1583 -0.7993 2.0246 9 6 5.8763 -2.0503 4.0058 10 16 7.6802 -1.9228 4.0820 11 6 7.9870 -2.8115 5.5722 12 1 7.1633 -3.2335 6.1286 13 6 9.2874 -2.9681 6.0316 14 7 9.5167 -3.6324 7.1446 15 14 10.7123 -2.2375 5.0695 16 1 10.9746 -0.8558 5.5462 17 1 11.9252 -3.0698 5.2726 18 1 10.3696 -2.2060 3.6249 19 7 2.0184 -0.6906 -1.1961 20 6 2.1472 -0.0183 -2.3571 21 8 1.8579 1.1602 -2.4118 22 6 2.6428 -0.7184 -3.5697 23 7 2.9587 -2.0024 -3.4906 24 6 3.3981 -2.6569 -4.5507 25 6 3.5367 -1.9795 -5.7543 26 6 3.2012 -0.6335 -5.7993 27 7 2.7627 -0.0422 -4.7024 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3574 35 1 3.4259 -1.7365 3.1103 36 1 5.4414 -1.5910 4.8935 37 1 5.5882 -3.1006 3.9620 38 1 10.4255 -3.7422 7.4654 39 1 2.2491 -1.6318 -1.1525 40 1 3.6501 -3.7047 -4.4807 41 1 3.8970 -2.4886 -6.6360 42 1 3.2967 -0.0767 -6.7198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:46 Heat of formation + Delta-G solvation = -26.135014 kcal Electronic energy + Delta-G solvation = -25270.252674 eV Core-core repulsion = 21376.848028 eV Total energy + Delta-G solvation = -3893.404646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69840 -39.92412 -39.20774 -36.90416 -34.69584 -34.23713 -33.00096 -32.44261 -31.65546 -30.16680 -28.22836 -26.06916 -25.61938 -25.06666 -23.61002 -22.07971 -21.07129 -20.41558 -18.92038 -18.08769 -17.84608 -16.69318 -16.61378 -16.29473 -16.11530 -15.86372 -15.54733 -15.37454 -14.96776 -14.57930 -14.33003 -14.16312 -14.07448 -13.84092 -13.77520 -13.34699 -12.90461 -12.79923 -12.42637 -12.28213 -11.81684 -11.71068 -11.61489 -11.46071 -11.31484 -11.26032 -11.00994 -10.60643 -10.43877 -10.29660 -9.86461 -9.86168 -9.57785 -9.45962 -9.02432 -8.96482 -8.50137 -6.92153 -6.29325 -4.00993 -0.06099 0.51129 2.24298 2.35380 2.75779 2.97842 3.29076 3.33865 3.37740 3.40470 3.50506 3.63815 3.79220 3.99552 4.32808 4.34418 4.41358 4.46318 4.48176 4.67791 4.70454 4.75955 5.04816 5.05861 5.09764 5.14764 5.26338 5.33668 5.34939 5.54584 5.66422 5.69356 5.77794 5.81350 5.87615 6.00701 6.08190 6.33007 6.50584 6.96545 7.40776 7.59864 7.77282 7.93763 8.41171 8.49141 9.16938 10.79847 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.002106 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.413724 B =13290.688761 C =14650.818742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.097 0.903 4 C -0.139 4.139 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.703 5.703 20 C 0.587 3.413 21 O -0.502 6.502 22 C 0.283 3.717 23 N -0.494 5.494 24 C 0.148 3.852 25 C -0.208 4.208 26 C 0.146 3.854 27 N -0.469 5.469 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 1.336 -23.549 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.005 4.005 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.357 5.357 20 C 0.368 3.632 21 O -0.374 6.374 22 C 0.013 3.987 23 N -0.211 5.211 24 C -0.018 4.018 25 C -0.230 4.230 26 C -0.020 4.020 27 N -0.184 5.184 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.249 0.751 40 H 0.195 0.805 41 H 0.174 0.826 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.567 3.552 -23.859 31.060 hybrid contribution 0.052 -1.708 0.120 1.713 sum -19.515 1.844 -23.739 30.786 Atomic orbital electron populations 1.22177 0.94401 1.02518 1.03042 1.20999 0.94440 0.97826 0.82629 0.88539 1.22130 0.95388 1.02173 0.98069 1.21289 0.92725 0.98043 0.88413 1.45944 1.07712 1.58422 1.27130 1.20293 0.81661 0.79780 0.86754 1.90709 1.55007 1.44459 1.49148 1.23277 1.03012 1.03256 0.97898 1.84812 0.98169 1.73927 1.34730 1.22315 0.97280 1.39538 1.07731 0.89374 1.24717 0.98313 0.93900 0.94416 1.69937 1.21715 1.39484 1.20554 0.86733 0.82140 0.79896 0.83072 1.19203 1.19949 1.15937 1.45895 1.66268 1.14896 1.08683 1.17223 0.78456 0.85824 0.81713 1.90821 1.48106 1.14524 1.83904 1.22883 0.95111 0.87316 0.93438 1.68301 1.11100 1.08998 1.32671 1.23356 0.90275 1.00799 0.87414 1.23238 1.01407 0.97191 1.01132 1.23428 0.89857 0.92192 0.96568 1.68249 1.11757 1.39379 0.98972 0.91807 0.92139 0.91047 0.89059 0.90247 0.91518 0.91427 0.76652 0.88479 0.88459 0.91944 0.75116 0.80474 0.82632 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.12 2.57 -67.93 -0.17 0.95 16 3 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 4 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C 0.12 1.27 5.56 -4.04 -0.02 1.25 16 6 N -0.74 -8.88 5.56 -60.29 -0.33 -9.22 16 7 C 0.53 9.33 7.85 -10.98 -0.09 9.24 16 8 O -0.52 -11.35 15.86 5.56 0.09 -11.26 16 9 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 10 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 11 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 15 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 19 N -0.70 -6.22 4.52 -54.53 -0.25 -6.46 16 20 C 0.59 6.92 7.82 -12.01 -0.09 6.83 16 21 O -0.50 -7.46 16.53 5.39 0.09 -7.37 16 22 C 0.28 3.11 7.60 -157.07 -1.19 1.91 16 23 N -0.49 -4.39 9.58 -11.12 -0.11 -4.49 16 24 C 0.15 0.85 11.30 -17.22 -0.19 0.66 16 25 C -0.21 -0.91 10.18 -39.17 -0.40 -1.31 16 26 C 0.15 0.94 11.30 -17.23 -0.19 0.75 16 27 N -0.47 -5.09 10.13 -11.12 -0.11 -5.20 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 36 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 37 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.41 3.15 7.91 -40.82 -0.32 2.82 16 40 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.16 0.13 8.06 -52.48 -0.42 -0.29 16 42 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -39.01 380.97 -8.21 -47.22 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.69 Total: 0.89 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.70 Total: 4.39 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.03 Total: -51.13 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.01 -8.21 -47.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.087 kcal (2) G-P(sol) polarization free energy of solvation -39.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds