Wall clock time and date at job start Tue Mar 31 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 N 1.46505 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.34782 * 119.99770 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00121 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99763 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.47088 * 179.97438 * 9 7 6 11 11 C 1.76204 * 100.00026 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00427 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00137 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46811 * 89.99752 * 15 13 11 17 17 H 1.48493 * 109.47226 * 210.00147 * 15 13 11 18 18 H 1.48499 * 109.47083 * 330.00404 * 15 13 11 19 19 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 20 20 C 1.34770 * 119.99955 * 84.99585 * 19 2 1 21 21 O 1.21473 * 120.00351 * 0.02562 * 20 19 2 22 22 C 1.48462 * 120.00102 * 179.97438 * 20 19 2 23 23 C 1.39534 * 120.55245 * 179.72161 * 22 20 19 24 24 C 1.38759 * 118.26440 * 179.80456 * 23 22 20 25 25 N 1.32204 * 119.14796 * 0.47277 * 24 23 22 26 26 C 1.31887 * 121.03301 * 359.75056 * 25 24 23 27 27 N 1.31580 * 121.92001 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 32 32 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 33 33 H 1.08998 * 109.47867 * 299.99927 * 5 4 2 34 34 H 1.08993 * 109.47122 * 60.00537 * 5 4 2 35 35 H 0.96994 * 120.00434 * 0.02562 * 6 5 4 36 36 H 1.08994 * 109.47513 * 300.00342 * 9 7 6 37 37 H 1.09001 * 109.47077 * 60.00195 * 9 7 6 38 38 H 0.96995 * 120.00622 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00110 * 265.00363 * 19 2 1 40 40 H 1.08009 * 120.86454 * 0.02562 * 23 22 20 41 41 H 1.08001 * 120.42327 * 180.24377 * 24 23 22 42 42 H 1.07999 * 119.03497 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5101 7 6 5.3741 -1.3387 2.7757 8 8 6.1583 -0.7988 2.0246 9 6 5.8763 -2.0481 4.0068 10 16 7.6802 -1.9206 4.0829 11 6 7.9872 -2.8092 5.5731 12 1 7.1635 -3.2320 6.1292 13 6 9.2876 -2.9659 6.0324 14 7 9.5170 -3.6302 7.1454 15 14 10.7124 -2.2352 5.0703 16 1 10.9746 -0.8534 5.5470 17 1 11.9253 -3.0675 5.2733 18 1 10.3697 -2.2037 3.6257 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8585 1.1604 -2.4116 22 6 2.6424 -0.7180 -3.5692 23 6 2.7745 -0.0345 -4.7785 24 6 3.2458 -0.7338 -5.8804 25 7 3.5424 -2.0157 -5.7509 26 6 3.4014 -2.6326 -4.5938 27 7 2.9623 -2.0088 -3.5217 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4369 1.3572 35 1 3.4259 -1.7349 3.1111 36 1 5.4415 -1.5881 4.8941 37 1 5.5882 -3.0984 3.9639 38 1 10.4258 -3.7400 7.4661 39 1 2.2490 -1.6317 -1.1527 40 1 2.5199 1.0124 -4.8540 41 1 3.3653 -0.2382 -6.8325 42 1 3.6537 -3.6804 -4.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075676977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:27 Heat of formation + Delta-G solvation = -31.046338 kcal Electronic energy + Delta-G solvation = -25248.990791 eV Core-core repulsion = 21355.373174 eV Total energy + Delta-G solvation = -3893.617617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69809 -40.06843 -39.26121 -37.02081 -34.71309 -34.35524 -32.63438 -32.44878 -31.89073 -30.21606 -28.26622 -26.21505 -25.62716 -24.90343 -23.65959 -22.11764 -21.14527 -20.45114 -18.98734 -18.13603 -17.86424 -16.74542 -16.43200 -16.16479 -15.99490 -15.89066 -15.81117 -15.45179 -14.97836 -14.77649 -14.45857 -14.27775 -14.07676 -13.87001 -13.85240 -13.38679 -12.99459 -12.80524 -12.49036 -12.31117 -11.77730 -11.66448 -11.52185 -11.41029 -11.33447 -11.26958 -11.01539 -10.85320 -10.61611 -10.30456 -9.87285 -9.86388 -9.64007 -9.51532 -9.04129 -8.98575 -8.51128 -6.93008 -6.29853 -4.01721 -0.03458 0.37823 2.27418 2.46030 2.74252 2.95538 3.27549 3.31512 3.33107 3.37935 3.50067 3.60457 3.62344 4.00714 4.29984 4.32335 4.36248 4.42624 4.48824 4.64525 4.73673 4.97128 4.99024 4.99977 5.07154 5.09200 5.21714 5.27880 5.31916 5.48895 5.63602 5.70576 5.75016 5.75931 5.82525 5.98729 5.99378 6.24661 6.47627 6.95754 7.40577 7.57071 7.63263 7.93180 8.40511 8.46661 9.16350 10.79313 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002101 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.086596 B =13321.713126 C =14703.375234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.701 5.701 20 C 0.573 3.427 21 O -0.523 6.523 22 C 0.131 3.869 23 C -0.170 4.170 24 C 0.151 3.849 25 N -0.506 5.506 26 C 0.297 3.703 27 N -0.496 5.496 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.178 0.822 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.706 4.687 -21.991 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.353 5.353 20 C 0.356 3.644 21 O -0.397 6.397 22 C -0.017 4.017 23 C -0.192 4.192 24 C -0.016 4.016 25 N -0.220 5.220 26 C 0.009 3.991 27 N -0.212 5.212 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -20.254 5.428 -23.019 31.138 hybrid contribution -0.530 -0.324 0.969 1.151 sum -20.784 5.104 -22.050 30.728 Atomic orbital electron populations 1.22171 0.94359 1.02548 1.03016 1.21018 0.94471 0.97815 0.82815 0.88555 1.22133 0.95429 1.02186 0.98078 1.21277 0.92675 0.98015 0.88452 1.45945 1.07736 1.58503 1.27056 1.20299 0.81637 0.79749 0.86772 1.90708 1.54998 1.44462 1.49143 1.23276 1.03051 1.03272 0.97857 1.84813 0.98122 1.73922 1.34763 1.22312 0.97289 1.39550 1.07730 0.89373 1.24716 0.98311 0.93894 0.94415 1.69934 1.21727 1.39460 1.20551 0.86733 0.82153 0.79891 0.83070 1.19207 1.19931 1.15936 1.45964 1.65482 1.14954 1.08919 1.17782 0.78042 0.85994 0.82585 1.90811 1.49751 1.14728 1.84436 1.21637 0.95086 0.90550 0.94472 1.23017 0.99219 1.03712 0.93300 1.23411 0.89642 0.89631 0.98936 1.68399 1.15248 1.10806 1.27538 1.25061 0.90494 1.00913 0.82639 1.68349 1.11184 1.08796 1.32905 0.91030 0.91859 0.92124 0.89068 0.90242 0.91539 0.91476 0.76639 0.88480 0.88444 0.91932 0.75024 0.82084 0.80499 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.48 37.16 0.35 -0.60 16 2 C 0.14 1.00 2.57 -67.93 -0.17 0.83 16 3 H 0.10 0.82 7.58 -51.93 -0.39 0.43 16 4 C -0.14 -0.86 4.87 -26.73 -0.13 -0.99 16 5 C 0.12 1.23 5.56 -4.04 -0.02 1.21 16 6 N -0.74 -8.73 5.56 -60.29 -0.33 -9.06 16 7 C 0.53 9.24 7.85 -10.98 -0.09 9.15 16 8 O -0.52 -11.24 15.86 5.56 0.09 -11.15 16 9 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 10 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 11 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 15 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 19 N -0.70 -5.53 4.52 -54.55 -0.25 -5.78 16 20 C 0.57 5.63 7.79 -12.05 -0.09 5.53 16 21 O -0.52 -6.36 16.09 5.39 0.09 -6.27 16 22 C 0.13 1.17 6.79 -82.63 -0.56 0.61 16 23 C -0.17 -1.22 9.72 -38.91 -0.38 -1.60 16 24 C 0.15 0.93 11.31 -17.20 -0.19 0.73 16 25 N -0.51 -3.96 10.42 -14.60 -0.15 -4.12 16 26 C 0.30 2.22 12.27 -92.26 -1.13 1.08 16 27 N -0.50 -4.25 9.70 -11.14 -0.11 -4.36 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 3.44 8.47 -40.82 -0.35 3.10 16 36 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 37 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.41 2.92 7.99 -40.82 -0.33 2.59 16 40 H 0.16 0.96 7.74 -52.48 -0.41 0.55 16 41 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -37.29 380.40 -8.53 -45.83 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.68 Total: 1.55 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.99 Total: 1.86 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.07 Total: -49.04 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.29 -8.53 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075676977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.780 kcal (2) G-P(sol) polarization free energy of solvation -37.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds