Wall clock time and date at job start Tue Mar 31 2020 20:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47290 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00315 * 2 1 3 5 5 C 1.52999 * 109.47389 * 184.99607 * 4 2 1 6 6 N 1.46500 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.34775 * 120.00240 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00013 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00103 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.46918 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99795 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31637 * 119.99997 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00403 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46545 * 90.00335 * 15 13 11 17 17 H 1.48501 * 109.47082 * 210.00226 * 15 13 11 18 18 H 1.48500 * 109.46827 * 330.00602 * 15 13 11 19 19 N 1.46502 * 109.47015 * 240.00450 * 2 1 3 20 20 C 1.34777 * 120.00193 * 84.99884 * 19 2 1 21 21 O 1.21514 * 120.00098 * 0.02562 * 20 19 2 22 22 C 1.48147 * 120.00044 * 179.97438 * 20 19 2 23 23 C 1.39726 * 120.18437 * 180.27246 * 22 20 19 24 24 C 1.38818 * 117.90031 * 180.24288 * 23 22 20 25 25 C 1.38574 * 118.06807 * 359.51365 * 24 23 22 26 26 N 1.32168 * 120.06967 * 0.23591 * 25 24 23 27 27 N 1.28357 * 122.29777 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.47371 * 299.99581 * 1 2 3 29 29 H 1.08994 * 109.47463 * 59.99445 * 1 2 3 30 30 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47549 * 304.99800 * 4 2 1 32 32 H 1.09005 * 109.47327 * 65.00262 * 4 2 1 33 33 H 1.09004 * 109.47455 * 300.00601 * 5 4 2 34 34 H 1.09010 * 109.46800 * 60.00164 * 5 4 2 35 35 H 0.97001 * 119.99686 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.46968 * 300.00194 * 9 7 6 37 37 H 1.08998 * 109.46634 * 59.99881 * 9 7 6 38 38 H 0.96996 * 119.99977 * 179.97438 * 14 13 11 39 39 H 0.97007 * 119.99824 * 264.99808 * 19 2 1 40 40 H 1.08001 * 121.04433 * 0.02562 * 23 22 20 41 41 H 1.08002 * 120.96828 * 179.79660 * 24 23 22 42 42 H 1.08003 * 119.96768 * 180.24983 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 7 4.0532 -1.3036 2.5100 7 6 5.3740 -1.3389 2.7757 8 8 6.1583 -0.7989 2.0245 9 6 5.8764 -2.0493 4.0061 10 16 7.6802 -1.9215 4.0823 11 6 7.9873 -2.8115 5.5717 12 1 7.1637 -3.2343 6.1277 13 6 9.2877 -2.9684 6.0308 14 7 9.5172 -3.6328 7.1437 15 14 10.7124 -2.2366 5.0694 16 1 10.9744 -0.8553 5.5475 17 1 11.9255 -3.0689 5.2717 18 1 10.3697 -2.2037 3.6248 19 7 2.0182 -0.6905 -1.1962 20 6 2.1469 -0.0181 -2.3572 21 8 1.8584 1.1610 -2.4116 22 6 2.6413 -0.7163 -3.5667 23 6 2.7816 -0.0216 -4.7709 24 6 3.2438 -0.7235 -5.8757 25 6 3.5474 -2.0660 -5.7150 26 7 3.3900 -2.6441 -4.5370 27 7 2.9584 -2.0045 -3.5113 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1370 32 1 1.7517 -1.7716 1.2055 33 1 3.9994 -1.0728 0.4258 34 1 3.8532 0.4369 1.3573 35 1 3.4258 -1.7351 3.1110 36 1 5.4413 -1.5901 4.8938 37 1 5.5884 -3.0996 3.9622 38 1 10.4260 -3.7428 7.4644 39 1 2.2490 -1.6318 -1.1527 40 1 2.5347 1.0275 -4.8406 41 1 3.3677 -0.2363 -6.8316 42 1 3.9132 -2.6404 -6.5533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:22 Heat of formation + Delta-G solvation = -22.517467 kcal Electronic energy + Delta-G solvation = -25250.314546 eV Core-core repulsion = 21357.066768 eV Total energy + Delta-G solvation = -3893.247778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67451 -40.04820 -39.22999 -36.99772 -34.60564 -33.74668 -33.42554 -32.42939 -31.70571 -30.16920 -28.23580 -26.09215 -25.60802 -25.11233 -23.64567 -22.11705 -21.12589 -20.41705 -18.91660 -17.92310 -17.78065 -17.19964 -16.70688 -16.33565 -16.13192 -15.86315 -15.45229 -15.22058 -14.95904 -14.75642 -14.39857 -14.14929 -13.85530 -13.82290 -13.72701 -13.35626 -12.95911 -12.78823 -12.45876 -12.28119 -12.07179 -11.73705 -11.62913 -11.33954 -11.25076 -10.99891 -10.87369 -10.63140 -10.59709 -10.55619 -10.33313 -9.85098 -9.61355 -9.48680 -9.01565 -8.95893 -8.48937 -6.90803 -6.28088 -3.99723 -0.08722 0.19616 2.17968 2.49797 2.76762 2.98708 3.14575 3.29753 3.34514 3.35439 3.51776 3.64683 3.86235 4.02909 4.13128 4.33973 4.36019 4.40020 4.45576 4.54630 4.68102 4.76230 5.01851 5.03277 5.10977 5.11734 5.25184 5.27870 5.30659 5.34833 5.49527 5.53060 5.67077 5.77874 5.78859 5.85937 6.02015 6.03246 6.50992 6.97379 7.60393 7.62328 7.95040 8.01383 8.42433 8.49841 9.18181 10.81099 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002105 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.264526 B =13295.412236 C =14670.362741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.097 0.903 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.737 5.737 7 C 0.530 3.470 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.703 5.703 20 C 0.580 3.420 21 O -0.526 6.526 22 C 0.023 3.977 23 C -0.065 4.065 24 C -0.121 4.121 25 C 0.057 3.943 26 N -0.238 5.238 27 N -0.209 5.209 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.456 5.890 -24.162 32.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.179 4.179 5 C -0.005 4.005 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.355 5.355 20 C 0.362 3.638 21 O -0.401 6.401 22 C -0.124 4.124 23 C -0.095 4.095 24 C -0.150 4.150 25 C -0.106 4.106 26 N -0.081 5.081 27 N -0.056 5.056 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.110 6.216 -24.368 32.200 hybrid contribution -0.411 0.146 0.053 0.439 sum -20.521 6.361 -24.315 32.447 Atomic orbital electron populations 1.22172 0.94372 1.02580 1.02989 1.21009 0.94461 0.97796 0.82791 0.88542 1.22139 0.95429 1.02241 0.98058 1.21285 0.92691 0.97996 0.88489 1.45938 1.07731 1.58487 1.27052 1.20294 0.81644 0.79755 0.86763 1.90708 1.54998 1.44500 1.49131 1.23276 1.03012 1.03286 0.97869 1.84810 0.98172 1.73820 1.34835 1.22315 0.97286 1.39491 1.07743 0.89370 1.24718 0.98309 0.93905 0.94417 1.69940 1.21702 1.39500 1.20562 0.86733 0.82150 0.79872 0.83090 1.19222 1.19942 1.15921 1.45984 1.65558 1.14954 1.08959 1.17536 0.77879 0.85942 0.82404 1.90814 1.50110 1.14725 1.84494 1.22847 1.00291 0.93509 0.95728 1.22466 0.93049 1.02601 0.91355 1.22501 0.96737 0.95268 1.00503 1.24583 0.94275 0.93927 0.97776 1.73183 1.08506 1.29771 0.96625 1.73229 1.04898 1.05761 1.21729 0.91045 0.91865 0.92086 0.89068 0.90185 0.91492 0.91480 0.76636 0.88488 0.88426 0.91951 0.75008 0.81903 0.82273 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.48 37.15 0.35 -0.64 16 2 C 0.14 1.05 2.57 -67.93 -0.17 0.87 16 3 H 0.10 0.84 7.58 -51.93 -0.39 0.45 16 4 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C 0.12 1.27 5.56 -4.04 -0.02 1.25 16 6 N -0.74 -9.01 5.56 -60.29 -0.33 -9.34 16 7 C 0.53 9.43 7.85 -10.99 -0.09 9.34 16 8 O -0.52 -11.42 15.86 5.55 0.09 -11.33 16 9 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 10 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 11 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 12 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 15 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 19 N -0.70 -5.88 4.52 -54.66 -0.25 -6.13 16 20 C 0.58 5.86 7.78 -12.19 -0.09 5.76 16 21 O -0.53 -6.43 16.06 5.35 0.09 -6.34 16 22 C 0.02 0.21 6.83 -82.83 -0.57 -0.36 16 23 C -0.07 -0.45 9.73 -38.81 -0.38 -0.82 16 24 C -0.12 -0.55 10.20 -39.24 -0.40 -0.95 16 25 C 0.06 0.33 11.31 -17.28 -0.20 0.13 16 26 N -0.24 -2.31 11.51 30.58 0.35 -1.95 16 27 N -0.21 -2.16 10.75 33.32 0.36 -1.80 16 28 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 36 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 37 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.41 3.21 7.96 -40.82 -0.32 2.89 16 40 H 0.16 0.90 7.72 -52.49 -0.41 0.50 16 41 H 0.16 0.13 8.06 -52.49 -0.42 -0.29 16 42 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -38.06 380.41 -6.83 -44.90 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.68 Total: 1.23 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.26 Total: -0.68 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.90 Total: -45.12 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.06 -6.83 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.381 kcal (2) G-P(sol) polarization free energy of solvation -38.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds