Wall clock time and date at job start Tue Mar 31 2020 20:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46745 * 2 1 4 4 C 1.53006 * 109.46865 * 119.99202 * 2 1 3 5 5 C 1.52999 * 109.46712 * 185.00254 * 4 2 1 6 6 N 1.46508 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99696 * 180.02562 * 6 5 4 8 8 O 1.21546 * 120.00555 * 0.02562 * 7 6 5 9 9 C 1.47835 * 119.99419 * 179.97438 * 7 6 5 10 10 C 1.39949 * 120.94416 * 359.72020 * 9 7 6 11 11 N 1.32139 * 118.92885 * 180.24821 * 10 9 7 12 12 C 1.31871 * 120.96799 * 0.04394 * 11 10 9 13 13 N 1.31876 * 122.09342 * 359.95993 * 12 11 10 14 14 C 1.32143 * 120.96719 * 0.02562 * 13 12 11 15 15 N 1.46491 * 109.47307 * 239.99833 * 2 1 3 16 16 C 1.34772 * 120.00361 * 85.00057 * 15 2 1 17 17 O 1.21283 * 119.99775 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00402 * 179.97438 * 16 15 2 19 19 S 1.80996 * 109.47360 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99972 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00079 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99604 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00145 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99415 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47142 * 90.00227 * 24 22 20 26 26 H 1.48506 * 109.46769 * 209.99659 * 24 22 20 27 27 H 1.48494 * 109.47099 * 329.99915 * 24 22 20 28 28 H 1.08997 * 109.46878 * 60.00512 * 1 2 3 29 29 H 1.09002 * 109.46745 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47367 * 300.00149 * 1 2 3 31 31 H 1.09002 * 109.46477 * 65.00760 * 4 2 1 32 32 H 1.08993 * 109.47252 * 305.00728 * 4 2 1 33 33 H 1.08994 * 109.47385 * 60.00690 * 5 4 2 34 34 H 1.09001 * 109.47495 * 299.99955 * 5 4 2 35 35 H 0.97003 * 119.99596 * 359.97438 * 6 5 4 36 36 H 1.08005 * 120.53497 * 0.25379 * 10 9 7 37 37 H 1.07998 * 118.95568 * 179.97438 * 12 11 10 38 38 H 1.08003 * 120.54242 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00008 * 264.99547 * 15 2 1 40 40 H 1.09000 * 109.47006 * 300.00197 * 18 16 15 41 41 H 1.09004 * 109.46907 * 59.99949 * 18 16 15 42 42 H 0.97011 * 119.99591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3138 6 7 4.0532 -1.3041 2.5099 7 6 5.3740 -1.3394 2.7755 8 8 6.1600 -0.7976 2.0231 9 6 5.8667 -2.0362 3.9826 10 6 4.9788 -2.6606 4.8659 11 7 5.4621 -3.2677 5.9354 12 6 6.7586 -3.2895 6.1755 13 7 7.6301 -2.7140 5.3701 14 6 7.2340 -2.0848 4.2777 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0184 -2.3570 17 8 1.8583 1.1583 -2.4117 18 6 2.6501 -0.7286 -3.5873 19 16 2.7102 0.4341 -4.9731 20 6 3.3150 -0.6309 -6.2400 21 1 3.5250 -1.6671 -6.0198 22 6 3.5214 -0.1379 -7.5210 23 7 3.2659 1.1251 -7.7893 24 14 4.1619 -1.2671 -8.8643 25 1 3.0169 -1.9049 -9.5624 26 1 4.9571 -0.4766 -9.8379 27 1 5.0206 -2.3173 -8.2603 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -1.7714 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4371 1.3575 34 1 3.9995 -1.0727 0.4262 35 1 3.4258 -1.7355 3.1109 36 1 3.9156 -2.6466 4.6764 37 1 7.1183 -3.7947 7.0596 38 1 7.9536 -1.6156 3.6231 39 1 2.2492 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5510 -3.8324 42 1 3.4099 1.4695 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076240931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:45 Heat of formation + Delta-G solvation = -31.280745 kcal Electronic energy + Delta-G solvation = -25087.715706 eV Core-core repulsion = 21194.087924 eV Total energy + Delta-G solvation = -3893.627782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77290 -39.94299 -39.37108 -36.75099 -35.04148 -34.30556 -33.01293 -32.42571 -31.79173 -29.49313 -28.50033 -25.96972 -25.48046 -25.18879 -23.62559 -21.77509 -21.21526 -20.37857 -18.76078 -18.26918 -17.89920 -17.71769 -16.67124 -16.34603 -16.04720 -15.79567 -15.20829 -15.08026 -14.80177 -14.77146 -14.33269 -14.27679 -14.16544 -13.82358 -13.64735 -13.26343 -12.96026 -12.66293 -12.25282 -12.19901 -11.98300 -11.88815 -11.62291 -11.54466 -11.15539 -11.06114 -11.01849 -10.75735 -10.45356 -10.37643 -9.94597 -9.81338 -9.59882 -9.41024 -9.07016 -8.95745 -8.23633 -6.49564 -6.21367 -3.91796 -0.19531 0.38347 2.30976 2.48529 3.01359 3.07376 3.20710 3.22663 3.28089 3.32176 3.37712 3.52207 3.69083 3.78284 4.03536 4.20762 4.25004 4.35898 4.58644 4.64242 4.67208 5.06500 5.12507 5.13802 5.14527 5.24774 5.27429 5.47832 5.54749 5.61190 5.61331 5.65838 5.86089 5.88268 5.95251 6.12066 6.14374 6.18848 6.61036 6.86368 7.33905 7.59898 7.61279 7.66684 8.35538 8.59111 9.24074 10.86019 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.001956 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.571502 B =14313.638353 C =15760.312078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.116 3.884 6 N -0.723 5.723 7 C 0.566 3.434 8 O -0.519 6.519 9 C -0.241 4.241 10 C 0.183 3.817 11 N -0.522 5.522 12 C 0.315 3.685 13 N -0.520 5.520 14 C 0.210 3.790 15 N -0.737 5.737 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.171 0.829 37 H 0.203 0.797 38 H 0.184 0.816 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 -9.993 29.330 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.007 4.007 6 N -0.375 5.375 7 C 0.350 3.650 8 O -0.395 6.395 9 C -0.249 4.249 10 C 0.016 3.984 11 N -0.235 5.235 12 C 0.028 3.972 13 N -0.233 5.233 14 C 0.043 3.957 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.188 0.812 37 H 0.220 0.780 38 H 0.201 0.799 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.009 -7.933 29.368 30.420 hybrid contribution 0.164 -2.404 -1.205 2.694 sum 0.173 -10.336 28.163 30.000 Atomic orbital electron populations 1.22174 0.94937 1.02133 1.02895 1.20769 0.94227 0.97762 0.83133 0.88986 1.22124 0.94266 1.02231 0.99045 1.21518 0.93853 0.98212 0.87108 1.45882 1.06929 1.57174 1.27558 1.17766 0.82643 0.80074 0.84488 1.90870 1.55157 1.44865 1.48646 1.21844 0.97536 1.05864 0.99618 1.23467 1.00457 0.87167 0.87358 1.68485 1.16899 1.18484 1.19678 1.25338 0.84660 0.90356 0.96840 1.68619 1.39784 1.10095 1.04824 1.23608 0.93301 0.87755 0.90999 1.46132 1.69568 1.13868 1.09584 1.20301 0.76707 0.87214 0.83750 1.90703 1.48162 1.15741 1.84359 1.23540 1.03672 1.04874 0.98431 1.85388 1.86227 1.12954 0.98745 1.22866 1.50967 0.98164 0.96381 0.90947 1.24991 0.95104 0.95533 0.97966 1.70018 1.45577 1.13188 1.21473 0.86171 0.78825 0.79972 0.80550 1.20291 1.20741 1.19698 0.91381 0.92513 0.91845 0.90487 0.89603 0.90565 0.90388 0.76666 0.81179 0.78017 0.79931 0.76926 0.89230 0.89279 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.13 16 2 C 0.15 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 5 C 0.12 0.89 5.56 -4.04 -0.02 0.87 16 6 N -0.72 -4.36 5.51 -61.25 -0.34 -4.70 16 7 C 0.57 4.99 7.79 -12.34 -0.10 4.90 16 8 O -0.52 -6.86 16.44 5.33 0.09 -6.77 16 9 C -0.24 -1.70 5.91 -104.69 -0.62 -2.32 16 10 C 0.18 0.97 10.81 -16.78 -0.18 0.79 16 11 N -0.52 -3.40 10.42 -14.24 -0.15 -3.54 16 12 C 0.31 1.92 12.27 -92.02 -1.13 0.79 16 13 N -0.52 -4.03 10.42 -14.24 -0.15 -4.18 16 14 C 0.21 1.63 10.88 -16.78 -0.18 1.45 16 15 N -0.74 -8.70 4.53 -53.81 -0.24 -8.95 16 16 C 0.53 9.47 7.81 -10.99 -0.09 9.39 16 17 O -0.52 -11.25 15.53 5.55 0.09 -11.17 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 35 H 0.40 1.02 6.61 -40.82 -0.27 0.75 16 36 H 0.17 0.29 6.54 -52.48 -0.34 -0.06 16 37 H 0.20 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.18 1.32 7.74 -52.48 -0.41 0.92 16 39 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -38.38 380.76 -8.83 -47.21 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.52 Total: -0.06 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.85 Total: -0.75 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.14 Total: -46.83 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.38 -8.83 -47.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076240931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.933 kcal (2) G-P(sol) polarization free energy of solvation -38.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds